Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Reverse (-)

24633090 .. 24634341

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033227

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGATTGTTCAAAAGAAGAACGTTTTGACGAAAAGCCAACAGGAGGATTAATTATCAATGGCGCCTCACATTCCATTCGAGAAATTTATCCTAAGAGTCGGATCTTCCTCTGGAATCCAAGTACAAGAGACTCCAAGATATTGCCCCCATGTGAAGTAGTAGACAATGGTTGTTTTTCTTACTGCGGATTTGGTTATGACTACAATAGTGATGACTACAAGGTGCTAATAGTGGTTCCTCCAGAAGAATCTATTGATAATTACCAAGAGCACTTTAGTGATAAATCCATGATTTACACATTAAGAACAAATTCTTGGAGAAGGATTCAGGATTTCCCTCTTGATACTAGTTGTATGGTGGTTGATATGTCTGCAACTCTTGTAAATGGAGCTCTACATTGGATGGCGAGGCAAGGATCGAATAAGTCGTGGGTAATAATTTCTCTTGATTTAACTACTGAGAGATACGTGGATGTGCCGCAACCTGATTTTTATGGGACTCTTGTTGAGCATATTGGAATTGGGGCCTCAAGCACAGGGTGCTTGTGCTTGAATGTTTACAACGGTGCTGGTCGTCGAAGTTATGATTTTTGGGTGAAGAAGGAATATGGGGTGCGAGAGTCTTGGACTATATCGCTCAAAATCCTGTACATGGTTGACGATGAATGTGTCGATGGTCTAAGACCAGTGACATGGTTTTCTGAAAATGGGAAAATTTTGTTCAATAGAGATGGGAAACGGGCTACTTACAACACAAACAAAAATTCAGTTAGGTATCTGCGTCCAACAACTAGTACTTATTATTCATGTCCTCATGGTGATGTTTATGTTGAGAGCTTAGTTTCACCCAATGCTTACAGTAACCGTGAAGACAAAGAAATTAGCCGCCTCAATATCAATGTAGGAAGAACAAGAAGACGAGTGATGAATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

312

Amino Acids

35.73

Weight (kDa)

6.24

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	13 - 209	2.6e-18	F-box associated beta propeller domain
FBA_1	PF07734	32 - 282	5.8e-20	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	3 cut(s)	186, 479, 886
AclI	AACGTT	1 cut(s)	22
AclWI	GGATC	2 cut(s)	110, 424
AcsI	RAATTY	4 cut(s)	84, 310, 714, 763
AcyI	GRCGYC	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	540
AfaI	GTAC	3 cut(s)	124, 650, 796
AfiI	CCNNNNNNNGG	2 cut(s)	44, 652
AgsI	TTSAA	3 cut(s)	12, 553, 724
AhlI	ACTAGT	2 cut(s)	347, 791
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AleI	CACNNNNGTG	1 cut(s)	276
AluBI	AGCT	2 cut(s)	392, 837
AluI	AGCT	2 cut(s)	392, 837
Alw21I	GWGCWC	2 cut(s)	273, 394
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	2 cut(s)	110, 424
AoxI	GGCC	1 cut(s)	525
ApoI	RAATTY	4 cut(s)	84, 310, 714, 763
AseI	ATTAAT	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	525
AsuHPI	GGTGA	3 cut(s)	607, 830, 837
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	394
BbsI	GAAGAC	2 cut(s)	876, 922
Bbv12I	GWGCWC	2 cut(s)	273, 394
BccI	CCATC	3 cut(s)	397, 668, 725
BcoDI	GTCTC	1 cut(s)	123
BcuI	ACTAGT	2 cut(s)	347, 791
BfaI	CTAG	2 cut(s)	348, 792
BfoI	RGCGCY	1 cut(s)	66
BisI	GCNGC	2 cut(s)	479, 886
BlsI	GCNGC	2 cut(s)	480, 887
BmcAI	AGTACT	1 cut(s)	796
BmgT120I	GGNCC	1 cut(s)	525
BmiI	GGNNCC	3 cut(s)	64, 237, 526
BpiI	GAAGAC	2 cut(s)	876, 922
BpmI	CTGGAG	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	514
BsaAI	YACGTR	1 cut(s)	469
BsaHI	GRCGYC	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 652
Bse1I	ACTGG	1 cut(s)	686
BseGI	GGATG	2 cut(s)	408, 478
BseLI	CCNNNNNNNGG	2 cut(s)	44, 652
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	686
BshFI	GGCC	1 cut(s)	527
BshNI	GGYRCC	1 cut(s)	62
BsiHKAI	GWGCWC	2 cut(s)	273, 394
BslFI	GGGAC	1 cut(s)	511
BslI	CCNNNNNNNGG	2 cut(s)	44, 652
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	527
Bsp1286I	GDGCHC	2 cut(s)	273, 394
Bsp1407I	TGTACA	1 cut(s)	648
Bsp143I	GATC	2 cut(s)	102, 416
BspACI	CCGC	3 cut(s)	186, 479, 886
BspANI	GGCC	1 cut(s)	527
BspCNI	CTCAG	1 cut(s)	451
BspLI	GGNNCC	3 cut(s)	64, 237, 526
BspPI	GGATC	2 cut(s)	110, 424
BspT107I	GGYRCC	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	648
BsrI	ACTGG	1 cut(s)	686
BssMI	GATC	2 cut(s)	102, 416
BssNI	GRCGYC	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	566, 860, 866
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	540
BstAUI	TGTACA	1 cut(s)	648
BstBAI	YACGTR	1 cut(s)	469
BstDEI	CTNAG	4 cut(s)	93, 459, 680, 838
BstF5I	GGATG	2 cut(s)	408, 478
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	2 cut(s)	105, 419
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	2 cut(s)	102, 416
BstMWI	GCNNNNNNNGC	1 cut(s)	540
BstV2I	GAAGAC	2 cut(s)	876, 922
BstX2I	RGATCY	1 cut(s)	102
BstXI	CCANNNNNNTGG	1 cut(s)	693
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	527
BtsCI	GGATG	2 cut(s)	408, 478
BtsIMutI	CAGTG	1 cut(s)	693
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	525
CseI	GACGC	1 cut(s)	770
Csp6I	GTAC	3 cut(s)	123, 649, 795
CviAII	CATG	6 cut(s)	150, 289, 652, 693, 807, 815
CviJI	RGCY	6 cut(s)	37, 392, 527, 743, 837, 885
CviKI_1	RGCY	6 cut(s)	37, 392, 527, 743, 837, 885
CviQI	GTAC	3 cut(s)	123, 649, 795
DdeI	CTNAG	4 cut(s)	93, 459, 680, 838
DinI	GGCGCC	1 cut(s)	64
DpnI	GATC	2 cut(s)	104, 418
DpnII	GATC	2 cut(s)	102, 416
DraIII	CACNNNGTG	1 cut(s)	540
Ecl136II	GAGCTC	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	394
Eco53kI	GAGCTC	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	394
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
FaeI	CATG	6 cut(s)	153, 292, 655, 696, 810, 818
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	6 cut(s)	149, 288, 651, 692, 806, 814
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	479, 886
FokI	GGATG	2 cut(s)	415, 485
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	2 cut(s)	479, 886
FspBI	CTAG	2 cut(s)	348, 792
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	2 cut(s)	479, 886
GsuI	CTGGAG	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	527
HgaI	GACGC	1 cut(s)	770
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	6 cut(s)	153, 292, 655, 696, 810, 818
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HinfI	GANTC	7 cut(s)	97, 115, 131, 248, 325, 499, 620
HphI	GGTGA	3 cut(s)	607, 830, 837
Hpy166II	GTNNAC	3 cut(s)	163, 559, 658
Hpy188I	TCNGA	2 cut(s)	102, 703
Hpy188III	TCNNGA	6 cut(s)	80, 112, 242, 329, 341, 446
Hpy8I	GTNNAC	3 cut(s)	163, 559, 658
Hpy99I	CGWCG	1 cut(s)	579
HpyAV	CCTTC	2 cut(s)	315, 595
HpyCH4III	ACNGT	3 cut(s)	566, 860, 866
HpyCH4IV	ACGT	2 cut(s)	22, 468
HpyCH4V	TGCA	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	540
HpyF3I	CTNAG	4 cut(s)	93, 459, 680, 838
HpySE526I	ACGT	2 cut(s)	22, 468
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	6 cut(s)	153, 292, 655, 696, 810, 818
HspAI	GCGC	1 cut(s)	63
KasI	GGCGCC	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	102, 416
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	9 cut(s)	27, 97, 255, 314, 498, 522, 555, 659, 699
MaeI	CTAG	2 cut(s)	348, 792
MaeII	ACGT	2 cut(s)	22, 468
MaeIII	GTNAC	2 cut(s)	688, 860
MalI	GATC	2 cut(s)	104, 418
MboI	GATC	2 cut(s)	102, 416
MboII	GAAGA	7 cut(s)	29, 97, 257, 610, 881, 918, 927
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	2 cut(s)	273, 394
MluCI	AATT	9 cut(s)	51, 84, 259, 310, 438, 519, 714, 763, 879
Mly113I	GGCGCC	1 cut(s)	63
MlyI	GAGTC	4 cut(s)	106, 125, 493, 629
MmeI	TCCRAC	2 cut(s)	80, 809
MnlI	CCTC	9 cut(s)	38, 76, 119, 249, 348, 402, 538, 822, 899
MroXI	GAANNNNTTC	1 cut(s)	310
MseI	TTAA	3 cut(s)	50, 302, 452
MslI	CAYNNNNRTG	2 cut(s)	276, 819
MwoI	GCNNNNNNNGC	1 cut(s)	540
NarI	GGCGCC	1 cut(s)	63
NdeII	GATC	2 cut(s)	102, 416
NlaIII	CATG	6 cut(s)	153, 292, 655, 696, 810, 818
NlaIV	GGNNCC	3 cut(s)	64, 237, 526
NmuCI	GTSAC	1 cut(s)	688
OliI	CACNNNNGTG	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	425
PdmI	GAANNNNTTC	1 cut(s)	310
PfeI	GAWTC	3 cut(s)	115, 248, 325
PkrI	GCNGC	2 cut(s)	480, 887
PleI	GAGTC	4 cut(s)	105, 125, 493, 628
PluTI	GGCGCC	1 cut(s)	66
PpsI	GAGTC	4 cut(s)	105, 125, 493, 628
Ppu21I	YACGTR	1 cut(s)	469
PshBI	ATTAAT	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	394
Psp1406I	AACGTT	1 cut(s)	22
PspN4I	GGNNCC	3 cut(s)	64, 237, 526
PspPI	GGNCC	1 cut(s)	525
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	3 cut(s)	124, 650, 796
RsaNI	GTAC	3 cut(s)	123, 649, 795
RseI	CAYNNNNRTG	2 cut(s)	276, 819
SacI	GAGCTC	1 cut(s)	394
SaqAI	TTAA	3 cut(s)	50, 302, 452
SatI	GCNGC	2 cut(s)	479, 886
Sau3AI	GATC	2 cut(s)	102, 416
Sau96I	GGNCC	1 cut(s)	525
ScaI	AGTACT	1 cut(s)	796
SchI	GAGTC	4 cut(s)	106, 125, 493, 629
SduI	GDGCHC	2 cut(s)	273, 394
SetI	ASST	7 cut(s)	25, 225, 394, 471, 487, 776, 839
SfoI	GGCGCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	2 cut(s)	276, 819
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
SpeI	ACTAGT	2 cut(s)	347, 791
Sse9I	AATT	9 cut(s)	51, 84, 259, 310, 438, 519, 714, 763, 879
SsiI	CCGC	3 cut(s)	186, 479, 886
SspDI	GGCGCC	1 cut(s)	62
SspMI	CTAG	2 cut(s)	348, 792
SstI	GAGCTC	1 cut(s)	394
TaaI	ACNGT	3 cut(s)	566, 860, 866
TaiI	ACGT	2 cut(s)	25, 471
TaqI	TCGA	4 cut(s)	79, 419, 577, 672
TasI	AATT	9 cut(s)	51, 84, 259, 310, 438, 519, 714, 763, 879
TatI	WGTACW	3 cut(s)	122, 648, 794
TauI	GCSGC	2 cut(s)	481, 888
TfiI	GAWTC	3 cut(s)	115, 248, 325
Tru1I	TTAA	3 cut(s)	50, 302, 452
Tru9I	TTAA	3 cut(s)	50, 302, 452
TscAI	CASTG	1 cut(s)	693
TseFI	GTSAC	1 cut(s)	688
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	2 cut(s)	678, 795
TspRI	CASTG	1 cut(s)	693
VspI	ATTAAT	1 cut(s)	50
XapI	RAATTY	4 cut(s)	84, 310, 714, 763
XmiI	GTMKAC	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	310
XspI	CTAG	2 cut(s)	348, 792
ZrmI	AGTACT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.