Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

1070692 .. 1071396

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02101.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAGATATGGATTTGGTTAAGGATTCAGGATTCTTGGAGAAGGATTCAGGATTCTCCTCTTGGTATCTTCTTTAATAATAAGCCTTCTACTTTTGCCAGTGGAGCTCTACATTGGACAGCTGCAAAAGAAGACTGGATTGGAGTAATTGTTTCGTTTGATTTAACAAGTGAGACATACAAGGAAGTGCCGCTACCACAGCCTGATATTGAGAGTCATGAACTACAACTGGGGGCTTCAAGAGGATGCTTATGCTTACTCACTGAAGTCGTCCATGGTGAAAGTCATGATATTTGGGTGATGATGGAGTATGGGGTGCCAGAGTCTTGGACCAAAACGGTCACAATTCCAAGGAGGGTGGGCACTTTCACAATTCCAAGGAGGTTGGACACTTTACGGTATACCAGGACCTTAAAACCGCTGACATGGTCTGTCGAAAATGGGGAGATTCTATTGTATGCAAATGGGAATCTGGTTTCCTACAATGCAAATAAGAATTCACTCGTGCATTTTGCAAGTGATGTAAAAATTCCCAATTACTCTCTTAGTAGTGTGGGATATGAAGAGAGCCTAGTCTCACCCAATGCTTACAGTAACCTTGGAGCAAACAAAATTTGTCCTCTCAATATCAGAATTGTACTGAGGAAACTTGTGAACTGTAGTGATAGATCCAGGAAGTTTGTCCAGATCAAGGGAGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

235

Amino Acids

26.61

Weight (kDa)

8.63

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	10 - 119	3e-10	F-box associated beta propeller domain
FBA_3	PF08268	10 - 155	1.5e-08	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	401
AciI	CCGC	2 cut(s)	191, 419
AclWI	GGATC	1 cut(s)	663
AcsI	RAATTY	3 cut(s)	496, 528, 612
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	1 cut(s)	639
AfiI	CCNNNNNNNGG	1 cut(s)	691
AgsI	TTSAA	1 cut(s)	240
AjnI	CCWGG	2 cut(s)	404, 671
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	2 cut(s)	107, 122
AluI	AGCT	2 cut(s)	107, 122
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	2 cut(s)	167, 580
AlwI	GGATC	1 cut(s)	663
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	3 cut(s)	496, 528, 612
AspS9I	GGNCC	2 cut(s)	330, 408
AsuHPI	GGTGA	3 cut(s)	290, 310, 570
AvaII	GGWCC	2 cut(s)	330, 408
BaeGI	GKGCMC	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	109
BarI	GAAGNNNNNNTAC	2 cut(s)	177, 209
BauI	CACGAG	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	1 cut(s)	298
BciT130I	CCWGG	2 cut(s)	406, 673
BcoDI	GTCTC	2 cut(s)	167, 580
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	658
BisI	GCNGC	2 cut(s)	123, 191
BlsI	GCNGC	2 cut(s)	124, 192
Bme1390I	CCNGG	2 cut(s)	406, 673
Bme18I	GGWCC	2 cut(s)	330, 408
BmgT120I	GGNCC	2 cut(s)	330, 408
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	2 cut(s)	406, 673
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	138
BsaJI	CCNNGG	4 cut(s)	274, 350, 377, 598
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	691
Bse1I	ACTGG	3 cut(s)	99, 140, 234
BseBI	CCWGG	2 cut(s)	406, 673
BseDI	CCNNGG	4 cut(s)	274, 350, 377, 598
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	691
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	3 cut(s)	99, 140, 234
BseRI	GAGGAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	109
BshNI	GGYRCC	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	691
BsmAI	GTCTC	2 cut(s)	167, 580
Bsp1286I	GDGCHC	2 cut(s)	109, 365
Bsp143I	GATC	2 cut(s)	668, 687
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	2 cut(s)	191, 419
BspCNI	CTCAG	1 cut(s)	633
BspHI	TCATGA	2 cut(s)	217, 286
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	663
BspT107I	GGYRCC	1 cut(s)	316
BsrI	ACTGG	3 cut(s)	99, 140, 234
BssECI	CCNNGG	4 cut(s)	274, 350, 377, 598
BssMI	GATC	2 cut(s)	668, 687
BssNAI	GTATAC	1 cut(s)	402
BssSI	CACGAG	1 cut(s)	503
BssT1I	CCWWGG	4 cut(s)	274, 350, 377, 598
Bst1107I	GTATAC	1 cut(s)	402
Bst2BI	CACGAG	1 cut(s)	503
Bst2UI	CCWGG	2 cut(s)	406, 673
Bst4CI	ACNGT	4 cut(s)	340, 399, 593, 659
Bst6I	CTCTTC	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	545, 641
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	251
BstKTI	GATC	2 cut(s)	671, 690
BstMAI	GTCTC	2 cut(s)	167, 580
BstMBI	GATC	2 cut(s)	668, 687
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 199
BstNI	CCWGG	2 cut(s)	406, 673
BstSCI	CCNGG	2 cut(s)	404, 671
BstSFI	CTRYAG	1 cut(s)	658
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	668
BstXI	CCANNNNNNTGG	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	668
BstZ17I	GTATAC	1 cut(s)	402
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	251
BtsIMutI	CAGTG	2 cut(s)	106, 261
CciI	TCATGA	2 cut(s)	217, 286
Cfr13I	GGNCC	2 cut(s)	330, 408
Csp6I	GTAC	1 cut(s)	638
CspCI	CAANNNNNGTGG	2 cut(s)	339, 374
CviAII	CATG	4 cut(s)	218, 275, 287, 426
CviJI	RGCY	6 cut(s)	85, 107, 122, 202, 236, 570
CviKI_1	RGCY	6 cut(s)	85, 107, 122, 202, 236, 570
CviQI	GTAC	1 cut(s)	638
DdeI	CTNAG	2 cut(s)	545, 641
DpnI	GATC	2 cut(s)	670, 689
DpnII	GATC	2 cut(s)	668, 687
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	107
Eco130I	CCWWGG	4 cut(s)	274, 350, 377, 598
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	330, 408
Eco53kI	GAGCTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	404, 671
EcoT14I	CCWWGG	4 cut(s)	274, 350, 377, 598
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	4 cut(s)	274, 350, 377, 598
FaeI	CATG	4 cut(s)	221, 278, 290, 429
FatI	CATG	4 cut(s)	217, 274, 286, 425
FblI	GTMKAC	1 cut(s)	401
Fnu4HI	GCNGC	2 cut(s)	123, 191
FokI	GGATG	1 cut(s)	258
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	2 cut(s)	123, 191
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	2 cut(s)	123, 191
Hin1II	CATG	4 cut(s)	221, 278, 290, 429
HinfI	GANTC	8 cut(s)	25, 32, 46, 53, 214, 323, 448, 469
HphI	GGTGA	3 cut(s)	290, 310, 570
Hpy166II	GTNNAC	2 cut(s)	402, 655
Hpy188I	TCNGA	1 cut(s)	632
Hpy188III	TCNNGA	6 cut(s)	29, 50, 218, 240, 287, 685
Hpy8I	GTNNAC	2 cut(s)	402, 655
HpyAV	CCTTC	2 cut(s)	36, 96
HpyCH4III	ACNGT	4 cut(s)	340, 399, 593, 659
HpyCH4V	TGCA	5 cut(s)	125, 461, 488, 508, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 199
HpyF3I	CTNAG	2 cut(s)	545, 641
Hsp92II	CATG	4 cut(s)	221, 278, 290, 429
Kzo9I	GATC	2 cut(s)	668, 687
LmnI	GCTCC	2 cut(s)	104, 602
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	2 cut(s)	340, 593
MalI	GATC	2 cut(s)	670, 689
MboI	GATC	2 cut(s)	668, 687
MboII	GAAGA	3 cut(s)	61, 143, 575
MflI	RGATCY	1 cut(s)	668
MhlI	GDGCHC	2 cut(s)	109, 365
MluCI	AATT	8 cut(s)	147, 345, 372, 496, 528, 535, 612, 633
MlyI	GAGTC	2 cut(s)	223, 332
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	6 cut(s)	69, 236, 348, 375, 630, 636
MseI	TTAA	4 cut(s)	20, 75, 164, 413
MspA1I	CMGCKG	2 cut(s)	122, 421
MspR9I	CCNGG	2 cut(s)	406, 673
MvaI	CCWGG	2 cut(s)	406, 673
MwoI	GCNNNNNNNGC	2 cut(s)	104, 199
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	2 cut(s)	668, 687
NlaIII	CATG	4 cut(s)	221, 278, 290, 429
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	340
PagI	TCATGA	2 cut(s)	217, 286
PfeI	GAWTC	6 cut(s)	25, 32, 46, 53, 448, 469
PflFI	GACNNNGTC	1 cut(s)	427
PfoI	TCCNGGA	1 cut(s)	671
PkrI	GCNGC	2 cut(s)	124, 192
PleI	GAGTC	2 cut(s)	222, 331
PpsI	GAGTC	2 cut(s)	222, 331
PpuMI	RGGWCCY	1 cut(s)	408
Psp124BI	GAGCTC	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	408
Psp6I	CCWGG	2 cut(s)	404, 671
PspGI	CCWGG	2 cut(s)	404, 671
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	2 cut(s)	330, 408
PspPPI	RGGWCCY	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	668
PsyI	GACNNNGTC	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	639
RsaNI	GTAC	1 cut(s)	638
SacI	GAGCTC	1 cut(s)	109
SaqAI	TTAA	4 cut(s)	20, 75, 164, 413
SatI	GCNGC	2 cut(s)	123, 191
Sau3AI	GATC	2 cut(s)	668, 687
Sau96I	GGNCC	2 cut(s)	330, 408
SchI	GAGTC	2 cut(s)	223, 332
ScrFI	CCNGG	2 cut(s)	406, 673
SduI	GDGCHC	2 cut(s)	109, 365
SetI	ASST	5 cut(s)	109, 124, 386, 413, 600
SfaNI	GCATC	1 cut(s)	236
SfcI	CTRYAG	1 cut(s)	658
SinI	GGWCC	2 cut(s)	330, 408
Sse9I	AATT	8 cut(s)	147, 345, 372, 496, 528, 535, 612, 633
SsiI	CCGC	2 cut(s)	191, 419
SspMI	CTAG	1 cut(s)	572
SstI	GAGCTC	1 cut(s)	109
StyD4I	CCNGG	2 cut(s)	404, 671
StyI	CCWWGG	4 cut(s)	274, 350, 377, 598
TaaI	ACNGT	4 cut(s)	340, 399, 593, 659
TaqI	TCGA	1 cut(s)	435
TasI	AATT	8 cut(s)	147, 345, 372, 496, 528, 535, 612, 633
TatI	WGTACW	1 cut(s)	637
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	6 cut(s)	25, 32, 46, 53, 448, 469
Tru1I	TTAA	4 cut(s)	20, 75, 164, 413
Tru9I	TTAA	4 cut(s)	20, 75, 164, 413
TscAI	CASTG	2 cut(s)	106, 268
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	2 cut(s)	234, 576
TspRI	CASTG	2 cut(s)	106, 268
Tth111I	GACNNNGTC	1 cut(s)	427
VpaK11BI	GGWCC	2 cut(s)	330, 408
XapI	RAATTY	3 cut(s)	496, 528, 612
XmiI	GTMKAC	1 cut(s)	401
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.