Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Reverse (-)

24169872 .. 24171071

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30988

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGATTGTTCGAAACAAGCACGTTTTGATGAAAAGCCAACAGAAGGATTATCAATGGCGCCTCACATTCCATTCGAGGTAATCACTGAAATACTTGCAAAACTTCCTGTGAAATCCTTGTTGAAATTTCGAGTTGTGTGCAAGTCATGGTGCTCCTTAATCTCAACTAGTCAATTCGTCAAACAACATCTATCCAGCAATACTAGTACTCCCAAAAAAGTAATCCAGCTGAGTAGTGATGTCTTAACGTTTTACTCTCTACATGATTCCAAACTAGTCCAGGAAACCATCAAGTTCCGGATTGAATGGCATGCACTCAGTCCTTTCCGTATCATGGGTTATTGTAATGGTTTGGTATGCATAGAAGCTTGTCGTGAGAACCGGATCTTCCTCTGGAATCCAAGTACAAGAGACTCCAAAATATTACCATGTGGAGTAGTAGACAATAGTTATTTTTCTTGGTGCGGATTTGGTTATGACTACAATAGTGACGACTACAAGGTGCTAACAGTGGATCGTCTTAAAAAACCTATTGATAATTACCAAGACTCTAGTCGTAATTCTATGATGTACACATTAAGAACAAATTCTTGGAGAAGGATTCAGGATTTCCCTCTTGAAACTAGTTATATGATGGTTGATAGTTCTGCTACTCATGTCAATGGAGCTCTACATTGGATGGCGAGGAAAGGGTTGAATTCGTGGGTAATCATCTCTCTTGATTTAACTACTGAGACATACATGGAAGTGCCGCAACCTGATTTTTATGGGACTCCAGTTGAGGATATTGGAATTGGGGCCTCAAGCACAGGGTGCTTATGCTTAAATGTTCACAACGGTGCTGGTTCTCAAAGTTATGATTTTTGGGTGATGAAGGAATATGGGGTGCGAGAGTCTTGGACTATATCGTTCAAAATCCCATACGTGGTTGTCGGTATACACCCAAGACCGGTGGCATGGTTTTCAGAAAATGGGAAAATTTTGTTCAATAGAGATGGAAAACTGGCTACTTACAACGCAAAAAAAAATTCAGTTAGGTATCTGCATCAAACAACTTATTGCAATTCATGTCCTCATGGTGATGTTTATGTTGAGAGCTTAGTATCACCCAATGCTTATAGTAATCGTGAAGCCAAAGAAATTAGCCGTCTCAATAATATCAATGTAGAAAGAACGACAAGAGTAGTGATGAGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

399

Amino Acids

45.65

Weight (kDa)

8.49

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	22 - 59	4.1e-10	F-box domain
F-box-like	PF12937	22 - 58	6.9e-07	F-box-like
FBA_3	PF08268	82 - 308	1.7e-21	F-box associated beta propeller domain
FBA_1	PF07734	93 - 368	1.8e-23	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	58
AccI	GTMKAC	2 cut(s)	441, 937
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	2 cut(s)	465, 752
AclI	AACGTT	1 cut(s)	248
AclWI	GGATC	2 cut(s)	392, 522
AcsI	RAATTY	5 cut(s)	125, 586, 697, 978, 1027
AcyI	GRCGYC	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	813
AfaI	GTAC	3 cut(s)	208, 406, 572
AfiI	CCNNNNNNNGG	4 cut(s)	44, 334, 925, 949
AgeI	ACCGGT	1 cut(s)	949
AgsI	TTSAA	6 cut(s)	124, 305, 620, 697, 913, 988
AhlI	ACTAGT	4 cut(s)	167, 203, 274, 623
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	574, 606
AleI	CACNNNNGTG	1 cut(s)	837
AluBI	AGCT	4 cut(s)	229, 368, 668, 1098
AluI	AGCT	4 cut(s)	229, 368, 668, 1098
Alw21I	GWGCWC	2 cut(s)	155, 670
Alw26I	GTCTC	3 cut(s)	405, 728, 1154
AlwI	GGATC	2 cut(s)	392, 522
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	1 cut(s)	798
ApoI	RAATTY	5 cut(s)	125, 586, 697, 978, 1027
AsiGI	ACCGGT	1 cut(s)	949
Asp700I	GAANNNNTTC	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	798
AsuHPI	GGTGA	3 cut(s)	880, 1091, 1098
AsuII	TTCGAA	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	670
Bbv12I	GWGCWC	2 cut(s)	155, 670
BccI	CCATC	4 cut(s)	296, 628, 673, 989
BceAI	ACGGC	1 cut(s)	1131
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BciT130I	CCWGG	1 cut(s)	281
BcoDI	GTCTC	3 cut(s)	405, 728, 1154
BcuI	ACTAGT	4 cut(s)	167, 203, 274, 623
BfaI	CTAG	5 cut(s)	168, 204, 275, 552, 624
BfoI	RGCGCY	1 cut(s)	62
BisI	GCNGC	1 cut(s)	752
BlsI	GCNGC	1 cut(s)	753
BmcAI	AGTACT	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	798
BmiI	GGNNCC	2 cut(s)	60, 799
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	1054
BoxI	GACNNNNGTC	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	759
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	787
BsaAI	YACGTR	1 cut(s)	925
BsaHI	GRCGYC	1 cut(s)	59
BsaWI	WCCGGW	3 cut(s)	297, 381, 949
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 334, 925, 949
Bse118I	RCCGGY	1 cut(s)	949
Bse1I	ACTGG	2 cut(s)	776, 1008
BseAI	TCCGGA	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	281
BseGI	GGATG	1 cut(s)	684
BseLI	CCNNNNNNNGG	4 cut(s)	44, 334, 925, 949
BseMII	CTCAG	3 cut(s)	221, 331, 723
BseNI	ACTGG	2 cut(s)	776, 1008
BshFI	GGCC	1 cut(s)	800
BshNI	GGYRCC	1 cut(s)	58
BshTI	ACCGGT	1 cut(s)	949
BsiHKAI	GWGCWC	2 cut(s)	155, 670
BsiSI	CCGG	3 cut(s)	298, 382, 950
BslFI	GGGAC	1 cut(s)	784
BslI	CCNNNNNNNGG	4 cut(s)	44, 334, 925, 949
BsmAI	GTCTC	3 cut(s)	405, 728, 1154
BsmBI	CGTCTC	1 cut(s)	1154
BsmFI	GGGAC	1 cut(s)	784
BsnI	GGCC	1 cut(s)	800
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	155, 670
Bsp13I	TCCGGA	1 cut(s)	297
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	2 cut(s)	384, 514
BspACI	CCGC	2 cut(s)	465, 752
BspANI	GGCC	1 cut(s)	800
BspCNI	CTCAG	3 cut(s)	222, 330, 724
BspEI	TCCGGA	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	60, 799
BspPI	GGATC	2 cut(s)	392, 522
BspT104I	TTCGAA	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	58
BsrFI	RCCGGY	1 cut(s)	949
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	2 cut(s)	776, 1008
BssAI	RCCGGY	1 cut(s)	949
BssMI	GATC	2 cut(s)	384, 514
BssNAI	GTATAC	1 cut(s)	938
BssNI	GRCGYC	1 cut(s)	59
Bst1107I	GTATAC	1 cut(s)	938
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	511, 839
BstACI	GRCGYC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	813
BstAUI	TGTACA	1 cut(s)	570
BstBAI	YACGTR	1 cut(s)	925
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	4 cut(s)	230, 317, 732, 1099
BstF5I	GGATG	1 cut(s)	684
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	2 cut(s)	387, 517
BstMAI	GTCTC	3 cut(s)	405, 728, 1154
BstMBI	GATC	2 cut(s)	384, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	813
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	314
BstPAI	GACNNNNGTC	1 cut(s)	552
BstSCI	CCNGG	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BstZ17I	GTATAC	1 cut(s)	938
BsuRI	GGCC	1 cut(s)	800
BtsCI	GGATG	1 cut(s)	684
BtsIMutI	CAGTG	2 cut(s)	84, 516
Cac8I	GCNNGC	1 cut(s)	312
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	949
Cfr13I	GGNCC	1 cut(s)	798
Csp6I	GTAC	3 cut(s)	207, 405, 571
CspAI	ACCGGT	1 cut(s)	949
CspCI	CAANNNNNGTGG	2 cut(s)	933, 968
CviJI	RGCY	9 cut(s)	37, 229, 368, 668, 800, 1007, 1098, 1133, 1146
CviKI_1	RGCY	9 cut(s)	37, 229, 368, 668, 800, 1007, 1098, 1133, 1146
CviQI	GTAC	3 cut(s)	207, 405, 571
DdeI	CTNAG	4 cut(s)	230, 317, 732, 1099
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	2 cut(s)	386, 516
DpnII	GATC	2 cut(s)	384, 514
DraIII	CACNNNGTG	1 cut(s)	813
Ecl136II	GAGCTC	1 cut(s)	668
Eco24I	GRGCYC	1 cut(s)	670
Eco53kI	GAGCTC	1 cut(s)	668
EcoICRI	GAGCTC	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	798
EcoRI	GAATTC	1 cut(s)	697
EcoRII	CCWGG	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	362
EcoT38I	GRGCYC	1 cut(s)	670
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	1154
FaqI	GGGAC	1 cut(s)	784
FblI	GTMKAC	2 cut(s)	441, 937
Fnu4HI	GCNGC	1 cut(s)	752
FokI	GGATG	1 cut(s)	691
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	1 cut(s)	752
FspBI	CTAG	5 cut(s)	168, 204, 275, 552, 624
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	752
GsuI	CTGGAG	1 cut(s)	759
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	800
HapII	CCGG	3 cut(s)	298, 382, 950
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	7 cut(s)	266, 397, 413, 548, 601, 772, 893
HpaII	CCGG	3 cut(s)	298, 382, 950
HphI	GGTGA	3 cut(s)	880, 1091, 1098
Hpy166II	GTNNAC	4 cut(s)	442, 573, 832, 938
Hpy188I	TCNGA	1 cut(s)	967
Hpy188III	TCNNGA	7 cut(s)	298, 374, 394, 605, 617, 719, 1127
Hpy8I	GTNNAC	4 cut(s)	442, 573, 832, 938
HpyAV	CCTTC	3 cut(s)	38, 591, 868
HpyCH4III	ACNGT	2 cut(s)	511, 839
HpyCH4IV	ACGT	3 cut(s)	22, 248, 924
HpyCH4V	TGCA	6 cut(s)	98, 141, 314, 360, 1045, 1062
HpyF10VI	GCNNNNNNNGC	1 cut(s)	813
HpyF3I	CTNAG	4 cut(s)	230, 317, 732, 1099
HpySE526I	ACGT	3 cut(s)	22, 248, 924
Hsp92I	GRCGYC	1 cut(s)	59
HspAI	GCGC	1 cut(s)	59
KasI	GGCGCC	1 cut(s)	58
Kpn2I	TCCGGA	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	384, 514
LmnI	GCTCC	2 cut(s)	158, 665
LweI	GCATC	1 cut(s)	1054
MaeI	CTAG	5 cut(s)	168, 204, 275, 552, 624
MaeII	ACGT	3 cut(s)	22, 248, 924
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	2 cut(s)	386, 516
MboI	GATC	2 cut(s)	384, 514
MboII	GAAGA	1 cut(s)	379
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	2 cut(s)	155, 670
Mly113I	GGCGCC	1 cut(s)	59
MlyI	GAGTC	4 cut(s)	407, 542, 766, 902
MnlI	CCTC	8 cut(s)	70, 72, 401, 624, 678, 775, 811, 1083
Mph1103I	ATGCAT	1 cut(s)	362
MroI	TCCGGA	1 cut(s)	297
MroXI	GAANNNNTTC	1 cut(s)	586
MseI	TTAA	6 cut(s)	158, 245, 522, 578, 725, 824
MslI	CAYNNNNRTG	4 cut(s)	660, 746, 837, 1080
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	3 cut(s)	298, 382, 950
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	813
NarI	GGCGCC	1 cut(s)	59
NdeII	GATC	2 cut(s)	384, 514
NlaIV	GGNNCC	2 cut(s)	60, 799
NmuCI	GTSAC	1 cut(s)	488
NsiI	ATGCAT	1 cut(s)	362
NspI	RCATGY	1 cut(s)	314
NspV	TTCGAA	1 cut(s)	11
OliI	CACNNNNGTG	1 cut(s)	837
PaeI	GCATGC	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	586
PfeI	GAWTC	3 cut(s)	266, 397, 601
PfoI	TCCNGGA	1 cut(s)	279
PinAI	ACCGGT	1 cut(s)	949
PkrI	GCNGC	1 cut(s)	753
PleI	GAGTC	4 cut(s)	407, 542, 766, 901
PluTI	GGCGCC	1 cut(s)	62
PpsI	GAGTC	4 cut(s)	407, 542, 766, 901
Ppu21I	YACGTR	1 cut(s)	925
PshAI	GACNNNNGTC	1 cut(s)	552
Psp124BI	GAGCTC	1 cut(s)	670
Psp1406I	AACGTT	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	60, 799
PspPI	GGNCC	1 cut(s)	798
PsuI	RGATCY	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	3 cut(s)	208, 406, 572
RsaNI	GTAC	3 cut(s)	207, 405, 571
RseI	CAYNNNNRTG	4 cut(s)	660, 746, 837, 1080
SacI	GAGCTC	1 cut(s)	670
SaqAI	TTAA	6 cut(s)	158, 245, 522, 578, 725, 824
SatI	GCNGC	1 cut(s)	752
Sau3AI	GATC	2 cut(s)	384, 514
Sau96I	GGNCC	1 cut(s)	798
ScaI	AGTACT	1 cut(s)	208
SchI	GAGTC	4 cut(s)	407, 542, 766, 902
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	2 cut(s)	155, 670
SfaNI	GCATC	1 cut(s)	1054
SfoI	GGCGCC	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	11
SmiMI	CAYNNNNRTG	4 cut(s)	660, 746, 837, 1080
SmlI	CTYRAG	1 cut(s)	802
SmoI	CTYRAG	1 cut(s)	802
SpeI	ACTAGT	4 cut(s)	167, 203, 274, 623
SphI	GCATGC	1 cut(s)	314
SsiI	CCGC	2 cut(s)	465, 752
SspDI	GGCGCC	1 cut(s)	58
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	5 cut(s)	168, 204, 275, 552, 624
SstI	GAGCTC	1 cut(s)	670
StyD4I	CCNGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	511, 839
TaiI	ACGT	3 cut(s)	25, 251, 927
TaqI	TCGA	3 cut(s)	11, 75, 130
TatI	WGTACW	3 cut(s)	206, 404, 570
TauI	GCSGC	1 cut(s)	754
TfiI	GAWTC	3 cut(s)	266, 397, 601
Tru1I	TTAA	6 cut(s)	158, 245, 522, 578, 725, 824
Tru9I	TTAA	6 cut(s)	158, 245, 522, 578, 725, 824
TscAI	CASTG	2 cut(s)	91, 516
TseFI	GTSAC	1 cut(s)	488
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	3 cut(s)	45, 887, 1056
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	2 cut(s)	91, 516
XapI	RAATTY	5 cut(s)	125, 586, 697, 978, 1027
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	2 cut(s)	441, 937
XmnI	GAANNNNTTC	1 cut(s)	586
XspI	CTAG	5 cut(s)	168, 204, 275, 552, 624
ZrmI	AGTACT	1 cut(s)	208
Zsp2I	ATGCAT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.