Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

75024004 .. 75024393

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG524600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGATCTATTCGTTAAGAGAAAAATCTTGGAGAAGGATTCAGGACTATTTTGGTGCTAGATGGGATCATCATCCTACTGACAAGTGTGCAATTTTTGTAAATGGAGCTCTACCCTGGATTGCGTTCACTCGCGGTACTAAGGTTATTTTTTCTCTTGATTTAGCAAGTGAAACATATGTGGAAGTGCCCCATCCTGATTTTTGGACTAATAAGATATTTTATTCTCACTATCAAGTTGGGGCTTCGAGGGGATGTTTGTGCATATTGTCCATCACCGGTTCTTTTACTCGTGTGGGGTATCAGTATCATCTATGCATGGTTGATGAAGGAATAGGGAGTGCGAGAGTCCTGGACCAAGTCACACGTAATCAGAAGCAAGTTGTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

129

Amino Acids

14.88

Weight (kDa)

8.64

Isoelectric Point (pI)

25.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	136
AflIII	ACRYGT	1 cut(s)	362
AgeI	ACCGGT	1 cut(s)	275
AjnI	CCWGG	2 cut(s)	113, 348
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw21I	GWGCWC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	72
AsiGI	ACCGGT	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	352
BaeGI	GKGCMC	1 cut(s)	189
BaeI	ACNNNNGTAYC	2 cut(s)	126, 159
BanII	GRGCYC	1 cut(s)	109
BauI	CACGAG	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	109
BccI	CCATC	3 cut(s)	54, 198, 278
BciT130I	CCWGG	2 cut(s)	115, 350
BfaI	CTAG	1 cut(s)	57
Bme1390I	CCNGG	2 cut(s)	115, 350
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmrFI	CCNGG	2 cut(s)	115, 350
BsaAI	YACGTR	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	275
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	115, 350
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	3 cut(s)	70, 190, 257
BseJI	GATNNNNATC	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	276
Bsp1286I	GDGCHC	2 cut(s)	109, 189
Bsp143I	GATC	2 cut(s)	3, 64
BspACI	CCGC	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	132
BspPI	GGATC	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	2 cut(s)	3, 64
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	2 cut(s)	115, 350
BstBAI	YACGTR	1 cut(s)	365
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	3 cut(s)	70, 190, 257
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	2 cut(s)	6, 67
BstMBI	GATC	2 cut(s)	3, 64
BstNI	CCWGG	2 cut(s)	115, 350
BstSCI	CCNGG	2 cut(s)	113, 348
BstSLI	GKGCMC	1 cut(s)	189
BstUI	CGCG	1 cut(s)	132
BtsCI	GGATG	3 cut(s)	70, 190, 257
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	135
CspAI	ACCGGT	1 cut(s)	275
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	2 cut(s)	107, 242
CviKI_1	RGCY	2 cut(s)	107, 242
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	2 cut(s)	5, 66
DpnII	GATC	2 cut(s)	3, 64
Ecl136II	GAGCTC	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	352
Eco53kI	GAGCTC	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	107
EcoRII	CCWGG	2 cut(s)	113, 348
EcoT22I	ATGCAT	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	1 cut(s)	319
FaiI	YATR	5 cut(s)	175, 177, 263, 313, 317
FatI	CATG	1 cut(s)	315
FauNDI	CATATG	1 cut(s)	175
FokI	GGATG	3 cut(s)	57, 177, 264
FriOI	GRGCYC	1 cut(s)	109
FspBI	CTAG	1 cut(s)	57
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	1 cut(s)	319
HinfI	GANTC	2 cut(s)	37, 345
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	3 cut(s)	41, 155, 194
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	27, 320
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	3 cut(s)	89, 261, 315
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	1 cut(s)	364
Hsp92II	CATG	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	3, 64
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	7 cut(s)	26, 100, 127, 207, 289, 335, 362
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	2 cut(s)	5, 66
MboI	GATC	2 cut(s)	3, 64
MhlI	GDGCHC	2 cut(s)	109, 189
MluCI	AATT	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	354
MnlI	CCTC	1 cut(s)	240
Mph1103I	ATGCAT	1 cut(s)	317
MseI	TTAA	1 cut(s)	14
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	115, 350
MvaI	CCWGG	2 cut(s)	115, 350
MvnI	CGCG	1 cut(s)	132
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	2 cut(s)	3, 64
NlaIII	CATG	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	37
PflFI	GACNNNGTC	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	348
PinAI	ACCGGT	1 cut(s)	275
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Ppu21I	YACGTR	1 cut(s)	365
Psp124BI	GAGCTC	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	113, 348
PspGI	CCWGG	2 cut(s)	113, 348
PspPI	GGNCC	1 cut(s)	352
PsyI	GACNNNGTC	1 cut(s)	356
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	14
Sau3AI	GATC	2 cut(s)	3, 64
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	2 cut(s)	115, 350
SduI	GDGCHC	2 cut(s)	109, 189
SetI	ASST	3 cut(s)	109, 144, 367
SinI	GGWCC	1 cut(s)	352
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	132
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	109
StyD4I	CCNGG	2 cut(s)	113, 348
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	1 cut(s)	245
TasI	AATT	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	339
Tth111I	GACNNNGTC	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	352
XspI	CTAG	1 cut(s)	57
Zsp2I	ATGCAT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.