AT3G26855

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004758
Physical Location & Seq
Reverse (-)
9898515 .. 9899456
942 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26855.1

Sequence Viewer

Length: 492 bp
ATGACGAACAACTGGATTGGAGATATTTGGTCCTTGAAAATCTCCCCAAAAATCAAACTCCTCATTTGGAAAGCGCTCAATAATGCTCTTCCTGTTGGGGCTCAACTGCTTTCCCGGAACATTTCTATAGAACCTTTCTGCACCCGATGCAGAGACTTTGAAACCATCACTCACATCTTATTCAACTGCCCTTTTGCTCAGAGAGAAGTTATTATGAAATCCATCATTGACGCAAAGGAATGGCAAACTGCCCAGCAGATGGGATCCATGCTTGGTTCTACTCCTTCCCTTTTCCCTCGGATTCATGATGAGAGGACTCCTTGCAACCCAATATGTTTATCCTGCAATCCGATGCTGCTTTCAACTTTCCCGAGCATCGTGCGAGCCTGGGATGGAAAATCTTCTCCCAAGCTTCGGGATCATACACCAAACACTCTTCTTCTTGCAATTATGTGTTATCTCCGCTATCTCAGCCTTACAACTGGGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

163

Amino Acids

18.48

Weight (kDa)

9.1

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 3 - 67 2.8e-16 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 259
AciI CCGC 1 cut(s) 463
AclWI GGATC 3 cut(s) 258, 271, 426
AfeI AGCGCT 1 cut(s) 75
AfiI CCNNNNNNNGG 2 cut(s) 259, 414
AgsI TTSAA 4 cut(s) 37, 161, 184, 363
AjnI CCWGG 1 cut(s) 386
AluBI AGCT 2 cut(s) 412, 489
AluI AGCT 2 cut(s) 412, 489
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 3 cut(s) 258, 271, 426
Ama87I CYCGRG 1 cut(s) 370
Aor51HI AGCGCT 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 355
Asp700I GAANNNNTTC 1 cut(s) 400
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 30
AsuC2I CCSGG 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 370
AvaII GGWCC 1 cut(s) 30
BamHI GGATCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 342
BccI CCATC 4 cut(s) 173, 230, 253, 386
BcgI CGANNNNNNTGC 2 cut(s) 361, 395
BciT130I CCWGG 1 cut(s) 388
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 77
BisI GCNGC 1 cut(s) 356
BlsI GCNGC 1 cut(s) 357
Bme1390I CCNGG 2 cut(s) 115, 388
Bme18I GGWCC 1 cut(s) 30
BmeT110I CYCGRG 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 2 cut(s) 115, 388
BmrI ACTGGG 1 cut(s) 492
BmsI GCATC 3 cut(s) 137, 342, 384
BmuI ACTGGG 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 296, 387
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 414
Bse1I ACTGG 2 cut(s) 17, 487
BseBI CCWGG 1 cut(s) 388
BseDI CCNNGG 2 cut(s) 296, 387
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 2 cut(s) 259, 414
BseMII CTCAG 2 cut(s) 212, 484
BseNI ACTGG 2 cut(s) 17, 487
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 342
BseYI CCCAGC 1 cut(s) 252
BsgI GTGCAG 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 259, 414
BsmAI GTCTC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 370
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 2 cut(s) 263, 418
BspACI CCGC 1 cut(s) 463
BspCNI CTCAG 2 cut(s) 211, 483
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 265
BspPI GGATC 3 cut(s) 258, 271, 426
BspQI GCTCTTC 1 cut(s) 93
BsrI ACTGG 2 cut(s) 17, 487
BssECI CCNNGG 2 cut(s) 296, 387
BssMI GATC 2 cut(s) 263, 418
Bst2UI CCWGG 1 cut(s) 388
Bst6I CTCTTC 2 cut(s) 93, 441
BstAPI GCANNNNNTGC 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 198, 470
BstF5I GGATG 1 cut(s) 397
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 266, 421
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 2 cut(s) 263, 418
BstMWI GCNNNNNNNGC 2 cut(s) 147, 471
BstNI CCWGG 1 cut(s) 388
BstSCI CCNGG 2 cut(s) 113, 386
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BtsCI GGATG 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 384
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 30
CseI GACGC 1 cut(s) 239
CviAII CATG 2 cut(s) 268, 305
CviJI RGCY 5 cut(s) 101, 386, 412, 474, 489
CviKI_1 RGCY 5 cut(s) 101, 386, 412, 474, 489
DdeI CTNAG 2 cut(s) 198, 470
DpnI GATC 2 cut(s) 265, 420
DpnII GATC 2 cut(s) 263, 418
Eam1104I CTCTTC 2 cut(s) 93, 441
EarI CTCTTC 2 cut(s) 93, 441
Eco24I GRGCYC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 30
Eco47III AGCGCT 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 386
EcoT38I GRGCYC 1 cut(s) 103
FaeI CATG 2 cut(s) 271, 308
FaiI YATR 7 cut(s) 128, 215, 269, 306, 334, 423, 452
FatI CATG 2 cut(s) 267, 304
Fnu4HI GCNGC 1 cut(s) 356
FokI GGATG 1 cut(s) 404
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 356
GlaI GCGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 356
GsaI CCCAGC 1 cut(s) 256
HaeII RGCGCY 1 cut(s) 77
HapII CCGG 1 cut(s) 115
HgaI GACGC 1 cut(s) 239
HhaI GCGC 1 cut(s) 76
Hin1II CATG 2 cut(s) 271, 308
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 2 cut(s) 301, 316
HpaII CCGG 1 cut(s) 115
Hpy188I TCNGA 3 cut(s) 201, 300, 351
Hpy188III TCNNGA 3 cut(s) 305, 370, 416
HpyAV CCTTC 1 cut(s) 294
HpyCH4V TGCA 5 cut(s) 141, 150, 324, 345, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 471
HpyF3I CTNAG 2 cut(s) 198, 470
Hsp92II CATG 2 cut(s) 271, 308
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 2 cut(s) 263, 418
LguI GCTCTTC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 486
LpnPI CCDG 7 cut(s) 105, 128, 266, 355, 373, 400, 468
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 3 cut(s) 137, 342, 384
MalI GATC 2 cut(s) 265, 420
MboI GATC 2 cut(s) 263, 418
MboII GAAGA 4 cut(s) 80, 393, 428, 431
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 1 cut(s) 447
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 3 cut(s) 71, 306, 306
MroXI GAANNNNTTC 1 cut(s) 400
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 2 cut(s) 115, 388
MvaI CCWGG 1 cut(s) 388
MwoI GCNNNNNNNGC 2 cut(s) 147, 471
NciI CCSGG 1 cut(s) 115
NdeII GATC 2 cut(s) 263, 418
NlaIII CATG 2 cut(s) 271, 308
NlaIV GGNNCC 1 cut(s) 265
PagI TCATGA 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 400
PfeI GAWTC 1 cut(s) 301
PflMI CCANNNNNTGG 1 cut(s) 259
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 1 cut(s) 357
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 252
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 30
PsuI RGATCY 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 93
SatI GCNGC 1 cut(s) 356
Sau3AI GATC 2 cut(s) 263, 418
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 2 cut(s) 115, 388
SduI GDGCHC 1 cut(s) 103
SetI ASST 3 cut(s) 136, 414, 491
SfaNI GCATC 3 cut(s) 137, 342, 384
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 30
Sse9I AATT 1 cut(s) 447
SsiI CCGC 1 cut(s) 463
StyD4I CCNGG 2 cut(s) 113, 386
TasI AATT 1 cut(s) 447
TfiI GAWTC 1 cut(s) 301
TseI GCWGC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 230, 293
Van91I CCANNNNNTGG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.