Rh1AG210900

Nsp1-like C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004758
Physical Location & Seq
Forward (+)
40365986 .. 40386521
20536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG210900.1

Sequence Viewer

Length: 783 bp
ATGTTGGGCTTCAATTTCAGATCCTCCGCCGCCTCCGCTTCTCAATCCACTTGCCCTTTCGGATCCTCCACCCCGCCTTTCTCATTTGCCTCCTCCCCTTCCCTCTTCGGATCCTCCGCGCCCGCCACCGCCTCCACCGGGGTCGGACTCGGATCCTCCTCTTTCGGCTCCGCTTCCTCAAACCCCTCCCCCTCCTCCTCCCCTTTCAGCTTCTTATCCAACACCACCTCCTCCCCCGCTTTCAGTAACCCAAACCCTAGCCCCGCCCCGAACCCGAACCCATTTCCCTCATTCGGAGTCGGATCCTCCACCGTCGCATCTTCTACACCTTTCGGATTCAATCCCTCTTCTGCCGTTTCATTGTTTTCCAGTGCCTCTGTGCCCGCCTCCTCATCACAAGCACAACCAAGCACTACTCTGCCCGCATTTGGTCTCACTACTTCAGCAACTGCAACTGCCACTGCAACTACAACTACAACAGCAACTGGTACCAGTACCCCTGCAGCTCAGACATCAAGTGCACATGTTGTGGCTTCTACTAGTGGGATCCTCCGTGCCCACCACCACCTCCACGGGGTTCGGACTCAGAGTCAAAGCTATTATCCAATCGATCGAATCAATGATTTACCAAAGGATCATGAACTTCCATGGGAGCCCTTCTTCTACTCTAAGAGGAAACAGACCCTGAGGCTTCATTCATCTGTGGCAAGCTCTAACCGGGCAGAAATATGTGGTTCTATAAAGGAAGTTGAAGCAATATTGGAACAAGTACTATGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0003674 GO:0005102 GO:0005198 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005642 GO:0005643 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0008092 GO:0008104 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008285 GO:0008289 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010648 GO:0010928 GO:0010930 GO:0010941 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0016070 GO:0017038 GO:0017056 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019894 GO:0019904 GO:0019953 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030159 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032182 GO:0032386 GO:0032501 GO:0032504 GO:0032774 GO:0032879 GO:0032880 GO:0032947 GO:0032991 GO:0033036 GO:0033157 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0042127 GO:0042169 GO:0042175 GO:0042306 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043122 GO:0043123 GO:0043130 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044613 GO:0044703 GO:0045184 GO:0045893 GO:0045935 GO:0046483 GO:0046822 GO:0046907 GO:0046966 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051259 GO:0051291 GO:0051427 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0060341 GO:0060548 GO:0065003 GO:0065007 GO:0070013 GO:0070201 GO:0070206 GO:0070208 GO:0070727 GO:0071166 GO:0071426 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0098589 GO:0098805 GO:1900180 GO:1901360 GO:1901362 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:1903827 GO:1904589 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nsp1_C Nucleoporin_FG

Protein Analysis

260

Amino Acids

26.61

Weight (kDa)

8.72

Isoelectric Point (pI)

68.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 488
AccB1I GGYRCC 1 cut(s) 488
AccII CGCG 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 3 cut(s) 490, 496, 771
AfiI CCNNNNNNNGG 4 cut(s) 138, 293, 428, 574
AflIII ACRYGT 1 cut(s) 523
AgsI TTSAA 3 cut(s) 13, 340, 752
AhdI GACNNNNNGTC 1 cut(s) 588
AhlI ACTAGT 1 cut(s) 539
AluBI AGCT 4 cut(s) 210, 506, 597, 711
AluI AGCT 4 cut(s) 210, 506, 597, 711
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 1 cut(s) 437
Alw44I GTGCAC 1 cut(s) 519
AlwNI CAGNNNCTG 3 cut(s) 449, 485, 685
ApaLI GTGCAC 1 cut(s) 519
ApeKI GCWGC 1 cut(s) 503
Asp718I GGTACC 1 cut(s) 488
AspLEI GCGC 1 cut(s) 121
AsuC2I CCSGG 2 cut(s) 139, 719
AxyI CCTNAGG 1 cut(s) 686
BaeGI GKGCMC 3 cut(s) 384, 523, 559
BamHI GGATCC 5 cut(s) 62, 110, 152, 302, 546
BanI GGYRCC 1 cut(s) 488
BanII GRGCYC 1 cut(s) 657
Bbv12I GWGCWC 1 cut(s) 523
BbvI GCAGC 1 cut(s) 515
BceAI ACGGC 1 cut(s) 338
BcnI CCSGG 2 cut(s) 139, 719
BcoDI GTCTC 1 cut(s) 437
BcuI ACTAGT 1 cut(s) 539
BfaI CTAG 2 cut(s) 258, 540
BfmI CTRYAG 1 cut(s) 501
BisI GCNGC 2 cut(s) 30, 504
BlsI GCNGC 2 cut(s) 31, 505
BmcAI AGTACT 1 cut(s) 771
Bme1390I CCNGG 2 cut(s) 139, 719
BmeRI GACNNNNNGTC 1 cut(s) 588
BmiI GGNNCC 8 cut(s) 64, 112, 154, 169, 304, 490, 548, 654
BmrFI CCNGG 2 cut(s) 139, 719
BmsI GCATC 1 cut(s) 326
BpuMI CCSGG 2 cut(s) 139, 719
Bsa29I ATCGAT 1 cut(s) 609
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 3 cut(s) 138, 571, 647
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 4 cut(s) 138, 293, 428, 574
Bse1I ACTGG 3 cut(s) 369, 490, 492
Bse21I CCTNAGG 1 cut(s) 686
BseCI ATCGAT 1 cut(s) 609
BseDI CCNNGG 3 cut(s) 138, 571, 647
BseLI CCNNNNNNNGG 4 cut(s) 138, 293, 428, 574
BseMII CTCAG 3 cut(s) 521, 599, 677
BseNI ACTGG 3 cut(s) 369, 490, 492
BseRI GAGGAG 6 cut(s) 82, 148, 184, 187, 220, 379
BseSI GKGCMC 3 cut(s) 384, 523, 559
BseXI GCAGC 1 cut(s) 515
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 613
BshNI GGYRCC 1 cut(s) 488
BshVI ATCGAT 1 cut(s) 609
BsiEI CGRYCG 1 cut(s) 613
BsiHKAI GWGCWC 1 cut(s) 523
BsiSI CCGG 2 cut(s) 138, 718
BslI CCNNNNNNNGG 4 cut(s) 138, 293, 428, 574
BsmAI GTCTC 1 cut(s) 437
Bso31I GGTCTC 1 cut(s) 437
Bsp1286I GDGCHC 4 cut(s) 384, 523, 559, 657
Bsp143I GATC 8 cut(s) 20, 62, 110, 152, 302, 546, 610, 634
Bsp19I CCATGG 1 cut(s) 647
BspCNI CTCAG 3 cut(s) 520, 598, 678
BspDI ATCGAT 1 cut(s) 609
BspFNI CGCG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 8 cut(s) 64, 112, 154, 169, 304, 490, 548, 654
BspMAI CTGCAG 1 cut(s) 505
BspT107I GGYRCC 1 cut(s) 488
BspTNI GGTCTC 1 cut(s) 437
BsrI ACTGG 3 cut(s) 369, 490, 492
BssECI CCNNGG 3 cut(s) 138, 571, 647
BssMI GATC 8 cut(s) 20, 62, 110, 152, 302, 546, 610, 634
BssT1I CCWWGG 1 cut(s) 647
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 2 cut(s) 110, 352
BstC8I GCNNGC 4 cut(s) 123, 384, 423, 709
BstDEI CTNAG 4 cut(s) 507, 585, 669, 686
BstDSI CCRYGG 2 cut(s) 571, 647
BstFNI CGCG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 8 cut(s) 23, 65, 113, 155, 305, 549, 613, 637
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 8 cut(s) 20, 62, 110, 152, 302, 546, 610, 634
BstMCI CGRYCG 1 cut(s) 613
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 2 cut(s) 137, 717
BstSFI CTRYAG 1 cut(s) 501
BstSLI GKGCMC 3 cut(s) 384, 523, 559
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 515
BstX2I RGATCY 6 cut(s) 20, 62, 110, 152, 302, 546
BstYI RGATCY 6 cut(s) 20, 62, 110, 152, 302, 546
Bsu15I ATCGAT 1 cut(s) 609
Bsu36I CCTNAGG 1 cut(s) 686
BsuTUI ATCGAT 1 cut(s) 609
BtgI CCRYGG 2 cut(s) 571, 647
BtsI GCAGTG 1 cut(s) 459
BtsIMutI CAGTG 2 cut(s) 376, 459
Cac8I GCNNGC 4 cut(s) 123, 384, 423, 709
CaiI CAGNNNCTG 3 cut(s) 449, 485, 685
CciI TCATGA 1 cut(s) 637
CfoI GCGC 1 cut(s) 121
ClaI ATCGAT 1 cut(s) 609
Csp6I GTAC 3 cut(s) 489, 495, 770
CviAII CATG 3 cut(s) 524, 638, 648
CviQI GTAC 3 cut(s) 489, 495, 770
DdeI CTNAG 4 cut(s) 507, 585, 669, 686
DpnI GATC 8 cut(s) 22, 64, 112, 154, 304, 548, 612, 636
DpnII GATC 8 cut(s) 20, 62, 110, 152, 302, 546, 610, 634
DriI GACNNNNNGTC 1 cut(s) 588
Eam1104I CTCTTC 2 cut(s) 110, 352
Eam1105I GACNNNNNGTC 1 cut(s) 588
EarI CTCTTC 2 cut(s) 110, 352
EciI GGCGGA 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 647
Eco24I GRGCYC 1 cut(s) 657
Eco31I GGTCTC 1 cut(s) 437
Eco57I CTGAAG 1 cut(s) 426
Eco81I CCTNAGG 1 cut(s) 686
EcoT14I CCWWGG 1 cut(s) 647
EcoT38I GRGCYC 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 647
FaeI CATG 3 cut(s) 527, 641, 651
FaiI YATR 6 cut(s) 525, 639, 649, 730, 740, 775
FatI CATG 3 cut(s) 523, 637, 647
FauI CCCGC 6 cut(s) 81, 130, 244, 271, 391, 430
Fnu4HI GCNGC 2 cut(s) 30, 504
FriOI GRGCYC 1 cut(s) 657
Fsp4HI GCNGC 2 cut(s) 30, 504
FspBI CTAG 2 cut(s) 258, 540
GlaI GCGC 1 cut(s) 120
GluI GCNGC 2 cut(s) 30, 504
HapII CCGG 2 cut(s) 138, 718
HhaI GCGC 1 cut(s) 121
Hin1II CATG 3 cut(s) 527, 641, 651
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HinfI GANTC 6 cut(s) 147, 297, 336, 583, 589, 615
HpaII CCGG 2 cut(s) 138, 718
Hpy166II GTNNAC 1 cut(s) 521
Hpy188III TCNNGA 1 cut(s) 638
Hpy8I GTNNAC 1 cut(s) 521
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 2 cut(s) 108, 667
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 4 cut(s) 452, 464, 503, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 4 cut(s) 507, 585, 669, 686
Hsp92II CATG 3 cut(s) 527, 641, 651
HspAI GCGC 1 cut(s) 119
KpnI GGTACC 1 cut(s) 492
Kzo9I GATC 8 cut(s) 20, 62, 110, 152, 302, 546, 610, 634
LmnI GCTCC 2 cut(s) 173, 652
LpnPI CCDG 7 cut(s) 151, 382, 471, 505, 513, 698, 731
Lsp1109I GCAGC 1 cut(s) 515
LweI GCATC 1 cut(s) 326
MaeI CTAG 2 cut(s) 258, 540
MaeIII GTNAC 1 cut(s) 245
MalI GATC 8 cut(s) 22, 64, 112, 154, 304, 548, 612, 636
MboI GATC 8 cut(s) 20, 62, 110, 152, 302, 546, 610, 634
MboII GAAGA 4 cut(s) 97, 312, 339, 652
MflI RGATCY 6 cut(s) 20, 62, 110, 152, 302, 546
MhlI GDGCHC 4 cut(s) 384, 523, 559, 657
MluCI AATT 2 cut(s) 13, 778
MlyI GAGTC 4 cut(s) 141, 306, 577, 598
MmeI TCCRAC 3 cut(s) 124, 243, 280
MseI TTAA 1 cut(s) 781
MspI CCGG 2 cut(s) 138, 718
MspR9I CCNGG 2 cut(s) 139, 719
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 35
NciI CCSGG 2 cut(s) 139, 719
NcoI CCATGG 1 cut(s) 647
NdeII GATC 8 cut(s) 20, 62, 110, 152, 302, 546, 610, 634
NlaIII CATG 3 cut(s) 527, 641, 651
NlaIV GGNNCC 8 cut(s) 64, 112, 154, 169, 304, 490, 548, 654
NspI RCATGY 1 cut(s) 527
PagI TCATGA 1 cut(s) 637
PciI ACATGT 1 cut(s) 523
PfeI GAWTC 2 cut(s) 336, 615
PkrI GCNGC 2 cut(s) 31, 505
Ple19I CGATCG 1 cut(s) 613
PleI GAGTC 4 cut(s) 141, 305, 577, 597
PpsI GAGTC 4 cut(s) 141, 305, 577, 597
PscI ACATGT 1 cut(s) 523
PspN4I GGNNCC 8 cut(s) 64, 112, 154, 169, 304, 490, 548, 654
PstI CTGCAG 1 cut(s) 505
PstNI CAGNNNCTG 3 cut(s) 449, 485, 685
PsuI RGATCY 6 cut(s) 20, 62, 110, 152, 302, 546
PvuI CGATCG 1 cut(s) 613
RsaI GTAC 3 cut(s) 490, 496, 771
RsaNI GTAC 3 cut(s) 489, 495, 770
SaqAI TTAA 1 cut(s) 781
SatI GCNGC 2 cut(s) 30, 504
Sau3AI GATC 8 cut(s) 20, 62, 110, 152, 302, 546, 610, 634
ScaI AGTACT 1 cut(s) 771
SchI GAGTC 4 cut(s) 141, 306, 577, 598
ScrFI CCNGG 2 cut(s) 139, 719
SduI GDGCHC 4 cut(s) 384, 523, 559, 657
SetI ASST 7 cut(s) 212, 230, 331, 508, 570, 599, 713
SfaNI GCATC 1 cut(s) 326
SfcI CTRYAG 1 cut(s) 501
SpeI ACTAGT 1 cut(s) 539
Sse9I AATT 2 cut(s) 13, 778
SspI AATATT 1 cut(s) 759
SspMI CTAG 2 cut(s) 258, 540
StyD4I CCNGG 2 cut(s) 137, 717
StyI CCWWGG 1 cut(s) 647
TaaI ACNGT 1 cut(s) 313
TaqI TCGA 2 cut(s) 609, 613
TasI AATT 2 cut(s) 13, 778
TatI WGTACW 1 cut(s) 769
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 2 cut(s) 336, 615
Tru1I TTAA 1 cut(s) 781
Tru9I TTAA 1 cut(s) 781
TscAI CASTG 2 cut(s) 376, 466
TseI GCWGC 1 cut(s) 503
TspDTI ATGAA 4 cut(s) 348, 654, 683, 687
TspGWI ACGGA 1 cut(s) 542
TspRI CASTG 2 cut(s) 376, 466
VneI GTGCAC 1 cut(s) 519
XceI RCATGY 1 cut(s) 527
XspI CTAG 2 cut(s) 258, 540
ZrmI AGTACT 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.