Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001860.1

Orthogroup ID

OG0004758

Physical Location & Seq

Genomic Coordinates Reverse (-)

100126 .. 100602

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001860.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggaaaccctagaatttcaaagcttcgatttgtcctccacaattaaaatcgctccaagccactttgggagaagcatctacgtcctccgagctccaaaagccctcaagaatcactggcaaaggtggccggaatcgccaactccgatcaaggcaattttgtccccgacgtgccttcttctcggccttgcagcgcccaccatagctcgtcccacactcgatggttaccacagacgtgtagaggaggttgaggcgaagaaagcccacttggaatcgcgtccgatggtggctggaggaggaagaatgaagccggtgaaatggagaggcgactcgggctcggggagagagaaaacagagctgagtttcggtttttggaaatccggccttatttgcaaattccgaaaattttcgtccttttataccaaaatggaaattttttccaaagcccataacttcttcatacgaactccgattctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.98

Weight (kDa)

10.15

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26855
rosa_chinensis	RchiOBHm_Chr1g0348231 RchiOBHm_Chr2g0100661
rosa_laevigata	RLG00000001883
rosa_multiflora	Rmu_sc0000178.1_g000007 Rmu_sc0001860.1_g000018 Rmu_sc0002164.1_g000004 Rmu_sc0002680.1_g000020 Rmu_sc0003396.1_g000028 Rmu_sc0005838.1_g000009 Rmu_sc0014037.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036040 Rroxscaffold_2G00123330 Rroxscaffold_6G00412120 Rroxscaffold_6G00423780
rosa_rugosa	Rorug02G0380000 Rorug04G0017800
rosa_samantha	Rh1AG210900 Rh1CG195200 Rh1DG206900 Rh2CG144900 Rh2DG144400 Rh4AG404100 Rh4BG415300 Rh4DG306300 Rh5AG130500 Rh7AG124200 Rh7CG128100 Rh7DG127800
rosa_wichuraiana	Rw7G025900 Rw7G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	274
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	4 cut(s)	14, 392, 401, 429
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	20
AjiI	CACGTC	2 cut(s)	168, 233
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AleI	CACNNNNGTG	1 cut(s)	231
AluBI	AGCT	4 cut(s)	24, 92, 203, 355
AluI	AGCT	4 cut(s)	24, 92, 203, 355
Alw21I	GWGCWC	1 cut(s)	94
Ama87I	CYCGRG	2 cut(s)	328, 334
AoxI	GGCC	3 cut(s)	125, 181, 379
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	4 cut(s)	14, 392, 401, 429
Asp700I	GAANNNNTTC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	322
AvaI	CYCGRG	2 cut(s)	328, 334
BanII	GRGCYC	2 cut(s)	94, 335
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	2 cut(s)	212, 274
BfaI	CTAG	2 cut(s)	11, 475
BfoI	RGCGCY	1 cut(s)	194
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
BmeT110I	CYCGRG	2 cut(s)	328, 334
BmgBI	CACGTC	2 cut(s)	168, 233
BmsI	GCATC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	89
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	347
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	2 cut(s)	254, 306
BseXI	GCAGC	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	274
BshFI	GGCC	3 cut(s)	127, 183, 381
BsiHKAI	GWGCWC	1 cut(s)	94
BsiHKCI	CYCGRG	2 cut(s)	328, 334
BsiSI	CCGG	3 cut(s)	128, 308, 378
BslFI	GGGAC	2 cut(s)	145, 192
BsmFI	GGGAC	2 cut(s)	145, 192
BsnI	GGCC	3 cut(s)	127, 183, 381
BsoBI	CYCGRG	2 cut(s)	328, 334
Bsp1286I	GDGCHC	2 cut(s)	94, 335
Bsp143I	GATC	1 cut(s)	144
BspANI	GGCC	3 cut(s)	127, 183, 381
BspCNI	CTCAG	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	307
BssMI	GATC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	356
BstEII	GGTNACC	1 cut(s)	221
BstFNI	CGCG	1 cut(s)	274
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 124, 133, 257, 330, 387
BstPI	GGTNACC	1 cut(s)	221
BstUI	CGCG	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	200
BsuRI	GGCC	3 cut(s)	127, 183, 381
BtrI	CACGTC	2 cut(s)	168, 233
BtsIMutI	CAGTG	1 cut(s)	112
CfoI	GCGC	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	307
CseI	GACGC	1 cut(s)	263
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
EaeI	YGGCCR	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	92
Eco24I	GRGCYC	2 cut(s)	94, 335
Eco53kI	GAGCTC	1 cut(s)	92
Eco88I	CYCGRG	2 cut(s)	328, 334
Eco91I	GGTNACC	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	92
EcoO65I	GGTNACC	1 cut(s)	221
EcoT38I	GRGCYC	2 cut(s)	94, 335
FaiI	YATR	4 cut(s)	200, 417, 447, 458
FaqI	GGGAC	2 cut(s)	145, 192
Fnu4HI	GCNGC	1 cut(s)	189
FriOI	GRGCYC	2 cut(s)	94, 335
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	11, 475
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	3 cut(s)	127, 183, 381
HapII	CCGG	3 cut(s)	128, 308, 378
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	5 cut(s)	109, 131, 269, 326, 469
HpaII	CCGG	3 cut(s)	128, 308, 378
HphI	GGTGA	1 cut(s)	322
Hpy188I	TCNGA	5 cut(s)	89, 144, 279, 398, 468
Hpy188III	TCNNGA	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	182
HpyCH4IV	ACGT	3 cut(s)	81, 167, 232
HpyCH4V	TGCA	2 cut(s)	188, 390
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 124, 133, 257, 330, 387
HpyF3I	CTNAG	1 cut(s)	356
HpySE526I	ACGT	3 cut(s)	81, 167, 232
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	2 cut(s)	58, 97
LpnPI	CCDG	5 cut(s)	100, 141, 273, 321, 391
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	2 cut(s)	11, 475
MaeII	ACGT	3 cut(s)	81, 167, 232
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	4 cut(s)	167, 265, 309, 445
MhlI	GDGCHC	2 cut(s)	94, 335
MluCI	AATT	6 cut(s)	14, 42, 153, 392, 401, 429
MlyI	GAGTC	1 cut(s)	320
MnlI	CCTC	9 cut(s)	46, 95, 113, 232, 235, 241, 284, 287, 314
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	3 cut(s)	128, 308, 378
MvnI	CGCG	1 cut(s)	274
MwoI	GCNNNNNNNGC	6 cut(s)	98, 124, 133, 257, 330, 387
NdeII	GATC	1 cut(s)	144
NmeAIII	GCCGAG	1 cut(s)	159
OliI	CACNNNNGTG	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	4 cut(s)	109, 131, 269, 469
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Psp124BI	GAGCTC	1 cut(s)	94
PspEI	GGTNACC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	144
SchI	GAGTC	1 cut(s)	320
SduI	GDGCHC	2 cut(s)	94, 335
SetI	ASST	9 cut(s)	26, 84, 94, 125, 170, 205, 235, 246, 357
SfaNI	GCATC	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	6 cut(s)	14, 42, 153, 392, 401, 429
SspMI	CTAG	2 cut(s)	11, 475
SstI	GAGCTC	1 cut(s)	94
TaiI	ACGT	3 cut(s)	84, 170, 235
TaqI	TCGA	2 cut(s)	27, 216
TasI	AATT	6 cut(s)	14, 42, 153, 392, 401, 429
TfiI	GAWTC	4 cut(s)	109, 131, 269, 469
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	1 cut(s)	119
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	2 cut(s)	317, 445
TspRI	CASTG	1 cut(s)	119
XapI	RAATTY	4 cut(s)	14, 392, 401, 429
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	2 cut(s)	11, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.