RLG00000001883

Glucuronoxylan 4-O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004758
Physical Location & Seq
Forward (+)
22447448 .. 22447979
532 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001883

Sequence Viewer

Length: 444 bp
ATGAATGAATTGTCGCCGAACCTAAAAAGCCAATTCTTTATACTCAGATCAAACCTCTCATCTTCTCTGAAAACCCCATCTTCATCATCCACCACGATCTCGGAAACCCACCTTTCAAATTCAACTACTGATCAATCTCAATGCCCATCACTTGAGCAAACCTTCAAGGATATATCAGTATCAGCAAGGATCCTAGCAAAGAGGACACCCTGCAACTTCCTCGTCTTCGACTTAGGCCTGGATAGCCTCATGTGGGCGGCTCTCAACTATGGTGGCTGCACCGTTGTTCTAGAAGGAAGAGTGAGATTGGAAGGAAGTGTACCTGCGACGACGAGCTTCAATAACGAAATTGAGCGGTCCAACGGGAGACCCAGCATGAATCATATGAGTGAAGTGAAGACTACGGTTTTCACATTCTACTGGTATGCATGTAAAGGGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

148

Amino Acids

16.25

Weight (kDa)

7.67

Isoelectric Point (pI)

62.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 56 - 99 6.1e-13 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 331
AccBSI CCGCTC 1 cut(s) 355
AciI CCGC 2 cut(s) 257, 355
AclWI GGATC 2 cut(s) 184, 197
AcsI RAATTY 1 cut(s) 118
AfaI GTAC 1 cut(s) 321
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 4 cut(s) 117, 123, 166, 340
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 1 cut(s) 336
AluI AGCT 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 361
AlwI GGATC 2 cut(s) 184, 197
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 276
ApoI RAATTY 1 cut(s) 118
AspS9I GGNCC 2 cut(s) 357, 438
AvaII GGWCC 2 cut(s) 357, 438
BamHI GGATCC 1 cut(s) 189
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
BbsI GAAGAC 2 cut(s) 217, 404
BbvI GCAGC 1 cut(s) 263
BccI CCATC 2 cut(s) 85, 154
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 1 cut(s) 239
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 361
BfaI CTAG 2 cut(s) 194, 290
BfuAI ACCTGC 1 cut(s) 331
BisI GCNGC 2 cut(s) 258, 277
BlsI GCNGC 2 cut(s) 259, 278
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 2 cut(s) 357, 438
BmgT120I GGNCC 2 cut(s) 357, 438
BmiI GGNNCC 2 cut(s) 191, 439
BmrFI CCNGG 1 cut(s) 239
BpiI GAAGAC 2 cut(s) 217, 404
BpuEI CTTGAG 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 361
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 425
BseBI CCWGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 425
BseXI GCAGC 1 cut(s) 263
BseYI CCCAGC 1 cut(s) 371
BsgI GTGCAG 1 cut(s) 262
BshFI GGCC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 361
BsnI GGCC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 361
Bsp143I GATC 4 cut(s) 47, 96, 130, 189
BspACI CCGC 2 cut(s) 257, 355
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 191, 439
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 2 cut(s) 184, 197
BspTNI GGTCTC 1 cut(s) 361
BsrBI CCGCTC 1 cut(s) 355
BsrI ACTGG 1 cut(s) 425
BssMI GATC 4 cut(s) 47, 96, 130, 189
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 2 cut(s) 283, 406
Bst6I CTCTTC 1 cut(s) 292
BstDEI CTNAG 2 cut(s) 44, 232
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 4 cut(s) 50, 99, 133, 192
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 4 cut(s) 47, 96, 130, 189
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 263
BstV2I GAAGAC 2 cut(s) 217, 404
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BsuRI GGCC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 86
BveI ACCTGC 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 357, 438
Csp6I GTAC 1 cut(s) 320
CspCI CAANNNNNGTGG 2 cut(s) 253, 288
CviAII CATG 3 cut(s) 250, 376, 429
CviJI RGCY 6 cut(s) 30, 237, 246, 260, 276, 336
CviKI_1 RGCY 6 cut(s) 30, 237, 246, 260, 276, 336
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 2 cut(s) 44, 232
DpnI GATC 4 cut(s) 49, 98, 132, 191
DpnII GATC 4 cut(s) 47, 96, 130, 189
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Eco147I AGGCCT 1 cut(s) 237
Eco31I GGTCTC 1 cut(s) 361
Eco47I GGWCC 2 cut(s) 357, 438
EcoO109I RGGNCCY 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 237
EcoT22I ATGCAT 1 cut(s) 430
FaeI CATG 3 cut(s) 253, 379, 432
FaiI YATR 9 cut(s) 41, 173, 251, 270, 377, 384, 386, 426, 430
FatI CATG 3 cut(s) 249, 375, 428
FauNDI CATATG 1 cut(s) 384
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 258, 277
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 2 cut(s) 258, 277
FspBI CTAG 2 cut(s) 194, 290
GluI GCNGC 2 cut(s) 258, 277
GsaI CCCAGC 1 cut(s) 375
HaeIII GGCC 1 cut(s) 237
Hin1II CATG 3 cut(s) 253, 379, 432
HinfI GANTC 1 cut(s) 379
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 3 cut(s) 47, 69, 103
Hpy188III TCNNGA 2 cut(s) 290, 441
Hpy8I GTNNAC 1 cut(s) 320
Hpy99I CGWCG 2 cut(s) 331, 334
HpyAV CCTTC 3 cut(s) 172, 287, 305
HpyCH4III ACNGT 2 cut(s) 283, 406
HpyCH4V TGCA 3 cut(s) 213, 279, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpyF3I CTNAG 2 cut(s) 44, 232
Hsp92II CATG 3 cut(s) 253, 379, 432
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 4 cut(s) 47, 96, 130, 189
LpnPI CCDG 6 cut(s) 223, 224, 251, 336, 385, 406
Lsp1109I GCAGC 1 cut(s) 263
MaeI CTAG 2 cut(s) 194, 290
MalI GATC 4 cut(s) 49, 98, 132, 191
MbiI CCGCTC 1 cut(s) 355
MboI GATC 4 cut(s) 47, 96, 130, 189
MboII GAAGA 5 cut(s) 54, 72, 217, 309, 409
MflI RGATCY 1 cut(s) 189
MluCI AATT 4 cut(s) 8, 32, 118, 348
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 4 cut(s) 65, 195, 230, 257
Mph1103I ATGCAT 1 cut(s) 430
MslI CAYNNNNRTG 1 cut(s) 387
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 243
NdeI CATATG 1 cut(s) 384
NdeII GATC 4 cut(s) 47, 96, 130, 189
NlaIII CATG 3 cut(s) 253, 379, 432
NlaIV GGNNCC 2 cut(s) 191, 439
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 1 cut(s) 432
PceI AGGCCT 1 cut(s) 237
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 2 cut(s) 259, 278
PpuMI RGGWCCY 1 cut(s) 438
Psp5II RGGWCCY 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 191, 439
PspPI GGNCC 2 cut(s) 357, 438
PspPPI RGGWCCY 1 cut(s) 438
PsuI RGATCY 1 cut(s) 189
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
RseI CAYNNNNRTG 1 cut(s) 387
SatI GCNGC 2 cut(s) 258, 277
Sau3AI GATC 4 cut(s) 47, 96, 130, 189
Sau96I GGNCC 2 cut(s) 357, 438
ScrFI CCNGG 1 cut(s) 239
SetI ASST 6 cut(s) 24, 57, 114, 164, 325, 338
SinI GGWCC 2 cut(s) 357, 438
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 4 cut(s) 8, 32, 118, 348
SseBI AGGCCT 1 cut(s) 237
SsiI CCGC 2 cut(s) 257, 355
SspMI CTAG 2 cut(s) 194, 290
StuI AGGCCT 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 2 cut(s) 283, 406
TaqI TCGA 1 cut(s) 228
TasI AATT 4 cut(s) 8, 32, 118, 348
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 1 cut(s) 379
TseI GCWGC 1 cut(s) 276
TspDTI ATGAA 4 cut(s) 17, 21, 72, 392
VpaK11BI GGWCC 2 cut(s) 357, 438
XapI RAATTY 1 cut(s) 118
XbaI TCTAGA 1 cut(s) 289
XceI RCATGY 1 cut(s) 432
XspI CTAG 2 cut(s) 194, 290
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.