Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004758

Physical Location & Seq

Genomic Coordinates Forward (+)

34730314 .. 34732090

Gene Structure 1777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGAGCACCGACTCTCTCTCGACAACCTTTACAAGTACGGAGCCTCCTCCTCGTCTCATTCCAAGTCTTCTCCTCGACCGCGACCTCAATCTTCTCCCCACCAGCAAAGATCTCGAGCTCTTCCTTTAGACCAAGCCGGGGCTCGGCTTTTACGCTGCCAAAGTGATGTTGTGGTTGAAAGGCCGACCACGGAAGCTCCGAGTGTCGGCGGCAGCGGATATGGCTTGGCAATGTACTTGGGCTTCTGTTTCAATAACTCGAATTTGGGCTTGGGCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

10.11

Weight (kDa)

9.77

Isoelectric Point (pI)

61.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26855
rosa_chinensis	RchiOBHm_Chr1g0348231 RchiOBHm_Chr2g0100661
rosa_laevigata	RLG00000001883
rosa_multiflora	Rmu_sc0000178.1_g000007 Rmu_sc0001860.1_g000018 Rmu_sc0002164.1_g000004 Rmu_sc0002680.1_g000020 Rmu_sc0003396.1_g000028 Rmu_sc0005838.1_g000009 Rmu_sc0014037.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036040 Rroxscaffold_2G00123330 Rroxscaffold_6G00412120 Rroxscaffold_6G00423780
rosa_rugosa	Rorug02G0380000 Rorug04G0017800
rosa_samantha	Rh1AG210900 Rh1CG195200 Rh1DG206900 Rh2CG144900 Rh2DG144400 Rh4AG404100 Rh4BG415300 Rh4DG306300 Rh5AG130500 Rh7AG124200 Rh7CG128100 Rh7DG127800
rosa_wichuraiana	Rw7G025900 Rw7G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	82
AciI	CCGC	3 cut(s)	80, 210, 216
AcsI	RAATTY	1 cut(s)	262
AfaI	GTAC	2 cut(s)	38, 236
AfiI	CCNNNNNNNGG	3 cut(s)	139, 144, 206
AgsI	TTSAA	2 cut(s)	179, 253
AjuI	GAANNNNNNNTTGG	1 cut(s)	254
AluBI	AGCT	2 cut(s)	119, 197
AluI	AGCT	2 cut(s)	119, 197
Alw21I	GWGCWC	2 cut(s)	9, 121
Alw26I	GTCTC	1 cut(s)	60
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	2 cut(s)	182, 274
ApeKI	GCWGC	2 cut(s)	156, 213
ApoI	RAATTY	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	274
AsuC2I	CCSGG	1 cut(s)	139
AvaI	CYCGRG	1 cut(s)	114
BanII	GRGCYC	2 cut(s)	121, 145
BarI	GAAGNNNNNNTAC	2 cut(s)	227, 259
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	2 cut(s)	9, 121
BbvI	GCAGC	2 cut(s)	143, 225
BceAI	ACGGC	1 cut(s)	261
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	60
BglII	AGATCT	1 cut(s)	110
BisI	GCNGC	3 cut(s)	157, 211, 214
BlsI	GCNGC	3 cut(s)	158, 212, 215
Bme1390I	CCNGG	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	138, 189
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 181, 211
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 144, 206
Bse3DI	GCAATG	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	138, 189
BseLI	CCNNNNNNNGG	3 cut(s)	139, 144, 206
BseMI	GCAATG	1 cut(s)	237
BseRI	GAGGAG	3 cut(s)	37, 40, 63
BseXI	GCAGC	2 cut(s)	143, 225
Bsh1236I	CGCG	1 cut(s)	82
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	184, 276
BsiEI	CGRYCG	1 cut(s)	80
BsiHKAI	GWGCWC	2 cut(s)	9, 121
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	3 cut(s)	139, 144, 206
BsmAI	GTCTC	1 cut(s)	60
BsmBI	CGTCTC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	184, 276
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	3 cut(s)	9, 121, 145
Bsp143I	GATC	1 cut(s)	110
BspACI	CCGC	3 cut(s)	80, 210, 216
BspANI	GGCC	2 cut(s)	184, 276
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	138, 189
BssMI	GATC	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	126
BstDSI	CCRYGG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	82
BstKTI	GATC	1 cut(s)	113
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	110
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	137
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	143, 225
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	184, 276
BtgI	CCRYGG	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	37, 235
CviQI	GTAC	2 cut(s)	37, 235
DpnI	GATC	1 cut(s)	112
DpnII	GATC	1 cut(s)	110
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	119
Eco24I	GRGCYC	2 cut(s)	121, 145
Eco53kI	GAGCTC	1 cut(s)	119
Eco88I	CYCGRG	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	119
EcoT38I	GRGCYC	2 cut(s)	121, 145
Esp3I	CGTCTC	1 cut(s)	60
FaiI	YATR	1 cut(s)	222
Fnu4HI	GCNGC	3 cut(s)	157, 211, 214
FriOI	GRGCYC	2 cut(s)	121, 145
Fsp4HI	GCNGC	3 cut(s)	157, 211, 214
GluI	GCNGC	3 cut(s)	157, 211, 214
HaeIII	GGCC	2 cut(s)	184, 276
HapII	CCGG	1 cut(s)	138
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	138
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	2 cut(s)	20, 114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	110
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	3 cut(s)	4, 41, 202
LpnPI	CCDG	2 cut(s)	116, 151
Lsp1109I	GCAGC	2 cut(s)	143, 225
MalI	GATC	1 cut(s)	112
MboI	GATC	1 cut(s)	110
MboII	GAAGA	3 cut(s)	60, 84, 113
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	3 cut(s)	9, 121, 145
MluCI	AATT	1 cut(s)	262
MlyI	GAGTC	1 cut(s)	6
MnlI	CCTC	5 cut(s)	55, 58, 61, 84, 96
MseI	TTAA	1 cut(s)	280
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	139
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	222
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	1 cut(s)	110
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	124
PaeR7I	CTCGAG	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	158, 212, 215
PleI	GAGTC	1 cut(s)	6
PpsI	GAGTC	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	2 cut(s)	38, 236
RsaNI	GTAC	2 cut(s)	37, 235
SacI	GAGCTC	1 cut(s)	121
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	280
SatI	GCNGC	3 cut(s)	157, 211, 214
Sau3AI	GATC	1 cut(s)	110
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	3 cut(s)	9, 121, 145
SetI	ASST	4 cut(s)	30, 88, 121, 199
Sfr274I	CTCGAG	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	3 cut(s)	80, 210, 216
SstI	GAGCTC	1 cut(s)	121
StyD4I	CCNGG	1 cut(s)	137
TaqI	TCGA	4 cut(s)	21, 76, 115, 260
TasI	AATT	1 cut(s)	262
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	280
Tru9I	TTAA	1 cut(s)	280
TseI	GCWGC	2 cut(s)	156, 213
TspGWI	ACGGA	2 cut(s)	54, 206
XapI	RAATTY	1 cut(s)	262
XhoI	CTCGAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.