Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003396.1

Orthogroup ID

OG0004758

Physical Location & Seq

Genomic Coordinates Reverse (-)

88554 .. 91417

Gene Structure 2864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003396.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atgcaagccaccttgtgggaagcatttatgtcctccgagctccaaaagccctcaacaatcactggcaaaggcggccggaatctctaccttgtagcgcccaccacagctcatcctacgctcaatggttaccacagacgtgtagaagaggttaaggcgaagaaagcccacttggaatcgaatccgatggtggccgaaggaggaagaaagaagccggcgaagtggagaggcgactcggggtcggggagagagaaaacaaagctgggtttccgtttttggaaatctggccttatttgcaaattccggaaattttcccgtcaggccgtgtccttatttgatgactacctttctccccgagctctcttctattttccttctctcccttctcccttgatccaaatggctggtttagatgtcacttccaaactcgcggcggctttggcaattggagacggctatgcaccgtttcatggcatagattgggcaagtctggcccatctaggagcatggtttggtgattcgagaacttccaaatggaagattcctcttccgctttgggtgggtataccaccgggttttgatgccttgctgacacctaaatgtgttggagatcagtctagggttgagcctttgttgttggaagggagggagaactcattgcttccagatattaaggaggttgttgagaaaatgcatcccatggttggttcttctcttggaaagtggggtggaggtggaaatgttgcttccctgctgaaaaaaggaagattgggagatggtgttgatcctgagctgttggattctgatgggttgtcagatgggaggaagcacaggatggaggttgcatctttcagctttggtttgaaggtttcccctaccaaaaaactacaatttcaagtagtgaagccttcatcccccattggtggaaagatggggactggcaagaagcacaaacctaagattctctcaactaccagacgtcgtgctttgctatccaggcttgaagaagaggctattgctcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

37.18

Weight (kDa)

9.93

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26855
rosa_chinensis	RchiOBHm_Chr1g0348231 RchiOBHm_Chr2g0100661
rosa_laevigata	RLG00000001883
rosa_multiflora	Rmu_sc0000178.1_g000007 Rmu_sc0001860.1_g000018 Rmu_sc0002164.1_g000004 Rmu_sc0002680.1_g000020 Rmu_sc0003396.1_g000028 Rmu_sc0005838.1_g000009 Rmu_sc0014037.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036040 Rroxscaffold_2G00123330 Rroxscaffold_6G00412120 Rroxscaffold_6G00423780
rosa_rugosa	Rorug02G0380000 Rorug04G0017800
rosa_samantha	Rh1AG210900 Rh1CG195200 Rh1DG206900 Rh2CG144900 Rh2DG144400 Rh4AG404100 Rh4BG415300 Rh4DG306300 Rh5AG130500 Rh7AG124200 Rh7CG128100 Rh7DG127800
rosa_wichuraiana	Rw7G025900 Rw7G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	979
AccB7I	CCANNNNNTGG	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	562
AccII	CGCG	1 cut(s)	428
AccIII	TCCGGA	1 cut(s)	300
AciI	CCGC	4 cut(s)	72, 428, 431, 548
AclWI	GGATC	2 cut(s)	385, 776
AcoI	YGGCCR	2 cut(s)	73, 189
AcsI	RAATTY	2 cut(s)	296, 305
AcyI	GRCGYC	1 cut(s)	976
AdeI	CACNNNGTG	1 cut(s)	15
AfiI	CCNNNNNNNGG	4 cut(s)	15, 467, 701, 920
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	3 cut(s)	862, 893, 1001
AhdI	GACNNNNNGTC	1 cut(s)	235
AjiI	CACGTC	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	992
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AleI	CACNNNNGTG	1 cut(s)	135
AluBI	AGCT	6 cut(s)	40, 107, 259, 356, 790, 852
AluI	AGCT	6 cut(s)	40, 107, 259, 356, 790, 852
Alw21I	GWGCWC	2 cut(s)	42, 358
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	2 cut(s)	385, 776
Ama87I	CYCGRG	2 cut(s)	232, 351
Aor13HI	TCCGGA	1 cut(s)	300
AoxI	GGCC	5 cut(s)	73, 189, 283, 318, 489
ApoI	RAATTY	2 cut(s)	296, 305
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	490
AsuC2I	CCSGG	1 cut(s)	570
AsuHPI	GGTGA	1 cut(s)	524
AvaI	CYCGRG	2 cut(s)	232, 351
BanII	GRGCYC	2 cut(s)	42, 358
Bbv12I	GWGCWC	2 cut(s)	42, 358
BccI	CCATC	7 cut(s)	178, 501, 767, 797, 809, 826, 922
BceAI	ACGGC	2 cut(s)	305, 466
BciT130I	CCWGG	1 cut(s)	994
BcnI	CCSGG	1 cut(s)	570
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	2 cut(s)	497, 615
BfoI	RGCGCY	1 cut(s)	98
BisI	GCNGC	3 cut(s)	73, 429, 432
BlsI	GCNGC	3 cut(s)	74, 430, 433
Bme1390I	CCNGG	2 cut(s)	570, 994
BmeRI	GACNNNNNGTC	1 cut(s)	235
BmeT110I	CYCGRG	2 cut(s)	232, 351
BmgBI	CACGTC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	490
BmrFI	CCNGG	2 cut(s)	570, 994
BmsI	GCATC	3 cut(s)	568, 700, 851
Bpu10I	CCTNAGC	1 cut(s)	786
BpuMI	CCSGG	1 cut(s)	570
BsaHI	GRCGYC	1 cut(s)	976
BsaJI	CCNNGG	1 cut(s)	696
BsaWI	WCCGGW	1 cut(s)	300
BsaXI	ACNNNNNCTCC	2 cut(s)	762, 792
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 467, 701, 920
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	67, 940
Bse3DI	GCAATG	1 cut(s)	653
BseAI	TCCGGA	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	994
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	4 cut(s)	109, 691, 837, 908
BseLI	CCNNNNNNNGG	4 cut(s)	15, 467, 701, 920
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	1 cut(s)	777
BseNI	ACTGG	2 cut(s)	67, 940
BseX3I	CGGCCG	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	428
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	5 cut(s)	75, 191, 285, 320, 491
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	42, 358
BsiHKCI	CYCGRG	2 cut(s)	232, 351
BsiSI	CCGG	4 cut(s)	76, 212, 301, 569
BslFI	GGGAC	1 cut(s)	946
BslI	CCNNNNNNNGG	4 cut(s)	15, 467, 701, 920
BsmAI	GTCTC	1 cut(s)	441
BsmBI	CGTCTC	1 cut(s)	441
BsmFI	GGGAC	1 cut(s)	946
BsnI	GGCC	5 cut(s)	75, 191, 285, 320, 491
BsoBI	CYCGRG	2 cut(s)	232, 351
Bsp1286I	GDGCHC	2 cut(s)	42, 358
Bsp13I	TCCGGA	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	390, 607, 781
Bsp19I	CCATGG	1 cut(s)	696
BspACI	CCGC	4 cut(s)	72, 428, 431, 548
BspANI	GGCC	5 cut(s)	75, 191, 285, 320, 491
BspCNI	CTCAG	1 cut(s)	778
BspEI	TCCGGA	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	428
BspPI	GGATC	2 cut(s)	385, 776
BsrDI	GCAATG	1 cut(s)	653
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	67, 940
BssAI	RCCGGY	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	3 cut(s)	390, 607, 781
BssNAI	GTATAC	1 cut(s)	563
BssNI	GRCGYC	1 cut(s)	976
BssT1I	CCWWGG	1 cut(s)	696
Bst1107I	GTATAC	1 cut(s)	563
Bst2UI	CCWGG	1 cut(s)	994
Bst4CI	ACNGT	1 cut(s)	462
Bst6I	CTCTTC	4 cut(s)	138, 365, 549, 999
BstACI	GRCGYC	1 cut(s)	976
BstC8I	GCNNGC	2 cut(s)	6, 213
BstDEI	CTNAG	3 cut(s)	786, 954, 1017
BstDSI	CCRYGG	1 cut(s)	696
BstEII	GGTNACC	1 cut(s)	125
BstF5I	GGATG	4 cut(s)	109, 691, 837, 908
BstFNI	CGCG	1 cut(s)	428
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	3 cut(s)	393, 610, 784
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	3 cut(s)	390, 607, 781
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	7 cut(s)	46, 72, 161, 291, 437, 488, 994
BstNI	CCWGG	1 cut(s)	994
BstPI	GGTNACC	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	568, 992
BstUI	CGCG	1 cut(s)	428
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstZ17I	GTATAC	1 cut(s)	563
BstZI	CGGCCG	1 cut(s)	73
BsuRI	GGCC	5 cut(s)	75, 191, 285, 320, 491
BtgI	CCRYGG	1 cut(s)	696
BtrI	CACGTC	1 cut(s)	137
BtsCI	GGATG	4 cut(s)	109, 691, 837, 908
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	6, 213
CfoI	GCGC	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	490
CviAII	CATG	3 cut(s)	467, 504, 697
DdeI	CTNAG	3 cut(s)	786, 954, 1017
DpnI	GATC	3 cut(s)	392, 609, 783
DpnII	GATC	3 cut(s)	390, 607, 781
DraIII	CACNNNGTG	1 cut(s)	15
DriI	GACNNNNNGTC	1 cut(s)	235
EaeI	YGGCCR	2 cut(s)	73, 189
EagI	CGGCCG	1 cut(s)	73
Eam1104I	CTCTTC	4 cut(s)	138, 365, 549, 999
Eam1105I	GACNNNNNGTC	1 cut(s)	235
EarI	CTCTTC	4 cut(s)	138, 365, 549, 999
Ecl136II	GAGCTC	2 cut(s)	40, 356
EclXI	CGGCCG	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	696
Eco24I	GRGCYC	2 cut(s)	42, 358
Eco52I	CGGCCG	1 cut(s)	73
Eco53kI	GAGCTC	2 cut(s)	40, 356
Eco88I	CYCGRG	2 cut(s)	232, 351
Eco91I	GGTNACC	1 cut(s)	125
EcoICRI	GAGCTC	2 cut(s)	40, 356
EcoO65I	GGTNACC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	992
EcoT14I	CCWWGG	1 cut(s)	696
EcoT22I	ATGCAT	1 cut(s)	693
EcoT38I	GRGCYC	2 cut(s)	42, 358
ErhI	CCWWGG	1 cut(s)	696
Esp3I	CGTCTC	1 cut(s)	441
FaeI	CATG	3 cut(s)	470, 507, 700
FaiI	YATR	7 cut(s)	29, 456, 468, 473, 505, 563, 698
FaqI	GGGAC	1 cut(s)	946
FatI	CATG	3 cut(s)	466, 503, 696
FblI	GTMKAC	1 cut(s)	562
Fnu4HI	GCNGC	3 cut(s)	73, 429, 432
FokI	GGATG	4 cut(s)	96, 678, 844, 895
FriOI	GRGCYC	2 cut(s)	42, 358
Fsp4HI	GCNGC	3 cut(s)	73, 429, 432
FspBI	CTAG	2 cut(s)	497, 615
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	3 cut(s)	73, 429, 432
GsaI	CCCAGC	1 cut(s)	263
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	5 cut(s)	75, 191, 285, 320, 491
HapII	CCGG	4 cut(s)	76, 212, 301, 569
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	976
Hin1II	CATG	3 cut(s)	470, 507, 700
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	8 cut(s)	79, 173, 178, 230, 515, 538, 797, 958
HpaII	CCGG	4 cut(s)	76, 212, 301, 569
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188I	TCNGA	4 cut(s)	37, 183, 802, 814
Hpy188III	TCNNGA	4 cut(s)	301, 519, 662, 785
Hpy8I	GTNNAC	1 cut(s)	563
Hpy99I	CGWCG	1 cut(s)	981
HpyAV	CCTTC	6 cut(s)	188, 381, 390, 632, 856, 915
HpyCH4III	ACNGT	1 cut(s)	462
HpyCH4IV	ACGT	2 cut(s)	136, 976
HpyCH4V	TGCA	5 cut(s)	4, 294, 458, 691, 842
HpyF10VI	GCNNNNNNNGC	7 cut(s)	46, 72, 161, 291, 437, 488, 994
HpyF3I	CTNAG	3 cut(s)	786, 954, 1017
HpySE526I	ACGT	2 cut(s)	136, 976
Hsp92I	GRCGYC	1 cut(s)	976
Hsp92II	CATG	3 cut(s)	470, 507, 700
HspAI	GCGC	1 cut(s)	95
Kpn2I	TCCGGA	1 cut(s)	300
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
Kzo9I	GATC	3 cut(s)	390, 607, 781
LmnI	GCTCC	2 cut(s)	45, 500
LweI	GCATC	3 cut(s)	568, 700, 851
MaeI	CTAG	2 cut(s)	497, 615
MaeII	ACGT	2 cut(s)	136, 976
MaeIII	GTNAC	2 cut(s)	125, 412
MalI	GATC	3 cut(s)	392, 609, 783
MboI	GATC	3 cut(s)	390, 607, 781
MfeI	CAATTG	1 cut(s)	441
MhlI	GDGCHC	2 cut(s)	42, 358
MluCI	AATT	4 cut(s)	296, 305, 441, 887
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	3 cut(s)	583, 615, 774
Mph1103I	ATGCAT	1 cut(s)	693
MroI	TCCGGA	1 cut(s)	300
MroNI	GCCGGC	1 cut(s)	211
MseI	TTAA	2 cut(s)	150, 669
MslI	CAYNNNNRTG	2 cut(s)	135, 595
MspI	CCGG	4 cut(s)	76, 212, 301, 569
MspR9I	CCNGG	2 cut(s)	570, 994
MunI	CAATTG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	994
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	7 cut(s)	46, 72, 161, 291, 437, 488, 994
NaeI	GCCGGC	1 cut(s)	213
NciI	CCSGG	1 cut(s)	570
NcoI	CCATGG	1 cut(s)	696
NdeII	GATC	3 cut(s)	390, 607, 781
NgoMIV	GCCGGC	1 cut(s)	211
NlaIII	CATG	3 cut(s)	470, 507, 700
NmuCI	GTSAC	1 cut(s)	412
NsiI	ATGCAT	1 cut(s)	693
OliI	CACNNNNGTG	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	213
PfeI	GAWTC	7 cut(s)	79, 173, 178, 515, 538, 797, 958
PflMI	CCANNNNNTGG	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	74, 430, 433
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
Psp124BI	GAGCTC	2 cut(s)	42, 358
Psp6I	CCWGG	1 cut(s)	992
PspEI	GGTNACC	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	992
PspPI	GGNCC	1 cut(s)	490
RseI	CAYNNNNRTG	2 cut(s)	135, 595
SacI	GAGCTC	2 cut(s)	42, 358
SaqAI	TTAA	2 cut(s)	150, 669
SatI	GCNGC	3 cut(s)	73, 429, 432
Sau3AI	GATC	3 cut(s)	390, 607, 781
Sau96I	GGNCC	1 cut(s)	490
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	2 cut(s)	570, 994
SduI	GDGCHC	2 cut(s)	42, 358
SfaNI	GCATC	3 cut(s)	568, 700, 851
SmiMI	CAYNNNNRTG	2 cut(s)	135, 595
Sse9I	AATT	4 cut(s)	296, 305, 441, 887
SsiI	CCGC	4 cut(s)	72, 428, 431, 548
SspMI	CTAG	2 cut(s)	497, 615
SstI	GAGCTC	2 cut(s)	42, 358
StyD4I	CCNGG	2 cut(s)	568, 992
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	1 cut(s)	462
TaiI	ACGT	2 cut(s)	139, 979
TaqI	TCGA	2 cut(s)	176, 518
TasI	AATT	4 cut(s)	296, 305, 441, 887
TauI	GCSGC	3 cut(s)	75, 431, 434
TfiI	GAWTC	7 cut(s)	79, 173, 178, 515, 538, 797, 958
Tru1I	TTAA	2 cut(s)	150, 669
Tru9I	TTAA	2 cut(s)	150, 669
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	455, 897
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	67
Van91I	CCANNNNNTGG	1 cut(s)	15
XapI	RAATTY	2 cut(s)	296, 305
XmiI	GTMKAC	1 cut(s)	562
XspI	CTAG	2 cut(s)	497, 615
ZraI	GACGTC	1 cut(s)	977
Zsp2I	ATGCAT	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.