Rorug02G0380000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004758
Physical Location & Seq
Forward (+)
48510111 .. 48511313
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0380000.1

Sequence Viewer

Length: 1203 bp
ATGCTCTCTCTGCGAACCAGTCGCAGATTTTGTCATGTGGCCGCTAAGGTAGTAGCTATGAATGATTGTGCTGCAGCTGTGCCCAAGTTGGTTTGCAATACAAAGGCCTTGGAGGAACCTGCCCTAGTTAAGCTTAAAGCAGAGAGGGATCCCGAGAAGCTATTCCAGCTATTTAAGGCCAATGCCCACAATCGGCTTGTCATTGAGAACCGCTTTGCATTTGAAGACACGGTGGCTCGGTTAGCTGGAGCTCGCCGGTTTGATTACATTGAGCATTTGCTTGAGCATCAGAAGACTCTTCCTCAAGGTCGGCGAGAAGGGTTCATTATGAGGATTATAACATTGTATGGTAAGGCTGGGATGACTAAGCATGCTATTGATACTTTTTGTGATATGCATTTATATGGTTGTTCTAGGACTGTTAAGTCATACAATGCTACACTCAAGGTTTTGACTCAAACTCGTGATTTAAGAGCAATTGAGGCATTTGTGAGTGACATTCCACAGCAATTTGACATTCAGTTGGACGTATATTCAGTTAATATTGTTATCAAGGCTTTTTGTGAAATGGGGATTTTGACTAAAGCATATGTGATCATGGTAGAGATGGAAAAGTTGGGAATAAGACCAGATGTCATTACGTATACAACTCTGATATCAGCATTTTATAAACATAGGCGGTGGGAGATTGCTAATGGGTTATGGAATCTTATGGTCCTGAAGAGGTGTTTACCTAATCTTGCAACTTTCAATGTTCGAATCCAATTTTTGGTTAATACAAAGCGAGCTTGGGAAGCTAATAGAGTGATGAGGATGATGCAGAACATTGGGATAGCACCTGATGAAGTTACATTTAATTTGGTGATCAAAGGGTTTTGCCAGGCTGGGAAACTTGAAATGGCAAAAAGGGTATATTCTGCTCTACATGACAAGGGATACAAACCCAATGTTAAAATTTATCAGACCATGATTCATTATCTTTGTAGAGAAAGGGATTTTGATCTGGCATATACATTGTGTAGAGATTCCATGCAGAAAAATTGGTATCCAAATGTGGATACCATTCATGCATTGCTAAAAGGCCTGCGGATGAAAAGTCAGCTTGGCAAGGCTAAGGCTATCATGACGTTGGTTCGTAGAAGGGTGCCTCCATTTCCTTCAAAACAGTTGAGTTCTTTGCAATCCATACTAACCAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

400

Amino Acids

46.11

Weight (kDa)

9.79

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 143 - 310 2.1e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 176 - 224 5e-12 PPR repeat family
PPR_3 PF13812 199 - 258 6.7e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 210 - 255 1.4e-10 PPR repeat family
PPR_2 PF13041 249 - 294 1.5e-07 PPR repeat family
TPR_24 PF23276 266 - 356 4.8e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 268 - 325 3.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 277 - 304 7.7e-08 PPR repeat
PPR_2 PF13041 280 - 324 9.8e-10 PPR repeat family
PPR_2 PF13041 315 - 362 7.8e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 338, 669
AasI GACNNNNNNGTC 1 cut(s) 424
Acc36I ACCTGC 1 cut(s) 127
AccB1I GGYRCC 1 cut(s) 1144
AccB7I CCANNNNNTGG 1 cut(s) 769
AccI GTMKAC 1 cut(s) 644
AciI CCGC 4 cut(s) 42, 211, 679, 1087
AclWI GGATC 2 cut(s) 143, 156
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 1 cut(s) 954
AcuI CTGAAG 1 cut(s) 740
AfiI CCNNNNNNNGG 2 cut(s) 192, 769
AgsI TTSAA 4 cut(s) 224, 751, 896, 1161
AhdI GACNNNNNGTC 1 cut(s) 632
AjnI CCWGG 1 cut(s) 879
Alw21I GWGCWC 1 cut(s) 253
AlwI GGATC 2 cut(s) 143, 156
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 4 cut(s) 39, 105, 177, 1081
ApeKI GCWGC 2 cut(s) 71, 74
ApoI RAATTY 1 cut(s) 954
Asp700I GAANNNNTTC 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 715
AsuHPI GGTGA 1 cut(s) 874
AsuII TTCGAA 1 cut(s) 757
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 715
BaeGI GKGCMC 1 cut(s) 84
BamHI GGATCC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 1144
BanII GRGCYC 1 cut(s) 253
BauI CACGAG 1 cut(s) 462
BbsI GAAGAC 2 cut(s) 231, 299
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 2 cut(s) 58, 86
BccI CCATC 1 cut(s) 601
BciT130I CCWGG 1 cut(s) 881
BciVI GTATCC 3 cut(s) 929, 1051, 1056
BclI TGATCA 2 cut(s) 594, 864
BfaI CTAG 2 cut(s) 125, 414
BfmI CTRYAG 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 127
BfuI GTATCC 3 cut(s) 929, 1051, 1056
BisI GCNGC 3 cut(s) 42, 72, 75
BlsI GCNGC 3 cut(s) 43, 73, 76
Bme1390I CCNGG 1 cut(s) 881
Bme18I GGWCC 1 cut(s) 715
BmeRI GACNNNNNGTC 1 cut(s) 632
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 715
BmiI GGNNCC 3 cut(s) 117, 150, 1146
BmrFI CCNGG 1 cut(s) 881
BmsI GCATC 2 cut(s) 295, 807
BpiI GAAGAC 2 cut(s) 231, 299
BpmI CTGGAG 1 cut(s) 267
Bpu10I CCTNAGC 2 cut(s) 45, 1113
Bpu14I TTCGAA 1 cut(s) 757
BpuEI CTTGAG 3 cut(s) 288, 302, 428
BsaAI YACGTR 1 cut(s) 642
BsaBI GATNNNNATC 1 cut(s) 999
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 769
Bse118I RCCGGY 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 1070
Bse8I GATNNNNATC 1 cut(s) 999
BseBI CCWGG 1 cut(s) 881
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 3 cut(s) 366, 819, 1095
BseJI GATNNNNATC 1 cut(s) 999
BseLI CCNNNNNNNGG 2 cut(s) 192, 769
BseMI GCAATG 1 cut(s) 1070
BseNI ACTGG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 2 cut(s) 58, 86
BseYI CCCAGC 2 cut(s) 356, 884
BshFI GGCC 4 cut(s) 41, 107, 179, 1083
BshNI GGYRCC 1 cut(s) 1144
BsiHKAI GWGCWC 1 cut(s) 253
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 192, 769
BsnI GGCC 4 cut(s) 41, 107, 179, 1083
BsoBI CYCGRG 1 cut(s) 152
Bsp119I TTCGAA 1 cut(s) 757
Bsp1286I GDGCHC 2 cut(s) 84, 253
Bsp143I GATC 4 cut(s) 148, 594, 864, 1000
BspACI CCGC 4 cut(s) 42, 211, 679, 1087
BspANI GGCC 4 cut(s) 41, 107, 179, 1083
BspHI TCATGA 1 cut(s) 1122
BspLI GGNNCC 3 cut(s) 117, 150, 1146
BspMAI CTGCAG 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 127
BspPI GGATC 2 cut(s) 143, 156
BspT104I TTCGAA 1 cut(s) 757
BspT107I GGYRCC 1 cut(s) 1144
BsrDI GCAATG 1 cut(s) 1070
BsrFI RCCGGY 1 cut(s) 255
BsrI ACTGG 1 cut(s) 18
BssAI RCCGGY 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 4 cut(s) 148, 594, 864, 1000
BssNAI GTATAC 1 cut(s) 645
BssSI CACGAG 1 cut(s) 462
BssT1I CCWWGG 1 cut(s) 108
Bst1107I GTATAC 1 cut(s) 645
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 881
Bst4CI ACNGT 3 cut(s) 232, 421, 1167
Bst6I CTCTTC 2 cut(s) 303, 716
BstBAI YACGTR 1 cut(s) 642
BstBI TTCGAA 1 cut(s) 757
BstC8I GCNNGC 4 cut(s) 253, 372, 786, 1085
BstDEI CTNAG 3 cut(s) 45, 366, 1113
BstF5I GGATG 3 cut(s) 366, 819, 1095
BstKTI GATC 4 cut(s) 151, 597, 867, 1003
BstMBI GATC 4 cut(s) 148, 594, 864, 1000
BstMWI GCNNNNNNNGC 5 cut(s) 10, 166, 242, 482, 794
BstNI CCWGG 1 cut(s) 881
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 879
BstSFI CTRYAG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 84
BstSNI TACGTA 1 cut(s) 642
BstV1I GCAGC 2 cut(s) 58, 86
BstV2I GAAGAC 2 cut(s) 231, 299
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BstZ17I GTATAC 1 cut(s) 645
BsuI GTATCC 3 cut(s) 929, 1051, 1056
BsuRI GGCC 4 cut(s) 41, 107, 179, 1083
BtsCI GGATG 3 cut(s) 366, 819, 1095
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 4 cut(s) 253, 372, 786, 1085
CciI TCATGA 1 cut(s) 1122
Cfr10I RCCGGY 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 715
CviAII CATG 8 cut(s) 35, 371, 598, 926, 967, 1030, 1067, 1123
DdeI CTNAG 3 cut(s) 45, 366, 1113
DpnI GATC 4 cut(s) 150, 596, 866, 1002
DpnII GATC 4 cut(s) 148, 594, 864, 1000
DrdI GACNNNNNNGTC 1 cut(s) 424
DriI GACNNNNNGTC 1 cut(s) 632
DseDI GACNNNNNNGTC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 303, 716
Eam1105I GACNNNNNGTC 1 cut(s) 632
EarI CTCTTC 2 cut(s) 303, 716
Ecl136II GAGCTC 1 cut(s) 251
Eco105I TACGTA 1 cut(s) 642
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 2 cut(s) 107, 1083
Eco24I GRGCYC 1 cut(s) 253
Eco32I GATATC 1 cut(s) 657
Eco47I GGWCC 1 cut(s) 715
Eco53kI GAGCTC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 740
Eco88I CYCGRG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 879
EcoRV GATATC 1 cut(s) 657
EcoT14I CCWWGG 1 cut(s) 108
EcoT22I ATGCAT 2 cut(s) 399, 1072
EcoT38I GRGCYC 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 8 cut(s) 38, 374, 601, 929, 970, 1033, 1070, 1126
FatI CATG 8 cut(s) 34, 370, 597, 925, 966, 1029, 1066, 1122
FauNDI CATATG 1 cut(s) 589
FbaI TGATCA 2 cut(s) 594, 864
FblI GTMKAC 1 cut(s) 644
Fnu4HI GCNGC 3 cut(s) 42, 72, 75
FokI GGATG 3 cut(s) 373, 826, 1102
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 3 cut(s) 42, 72, 75
FspBI CTAG 2 cut(s) 125, 414
GluI GCNGC 3 cut(s) 42, 72, 75
GsaI CCCAGC 2 cut(s) 360, 888
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 4 cut(s) 41, 107, 179, 1083
HapII CCGG 1 cut(s) 256
Hin1II CATG 8 cut(s) 38, 374, 601, 929, 970, 1033, 1070, 1126
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 6 cut(s) 295, 454, 706, 759, 970, 1025
HpaII CCGG 1 cut(s) 256
HphI GGTGA 1 cut(s) 874
Hpy166II GTNNAC 2 cut(s) 645, 731
Hpy188I TCNGA 3 cut(s) 291, 654, 963
Hpy188III TCNNGA 4 cut(s) 152, 464, 718, 1123
Hpy8I GTNNAC 2 cut(s) 645, 731
HpyAV CCTTC 3 cut(s) 311, 1134, 1167
HpyCH4III ACNGT 3 cut(s) 232, 421, 1167
HpyCH4IV ACGT 3 cut(s) 528, 641, 1127
HpyCH4V TGCA 9 cut(s) 74, 96, 218, 397, 743, 820, 1033, 1070, 1180
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 166, 242, 482, 794
HpyF3I CTNAG 3 cut(s) 45, 366, 1113
HpySE526I ACGT 3 cut(s) 528, 641, 1127
Hsp92II CATG 8 cut(s) 38, 374, 601, 929, 970, 1033, 1070, 1126
Ksp22I TGATCA 2 cut(s) 594, 864
Kzo9I GATC 4 cut(s) 148, 594, 864, 1000
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 2 cut(s) 58, 86
LweI GCATC 2 cut(s) 295, 807
MaeI CTAG 2 cut(s) 125, 414
MaeII ACGT 3 cut(s) 528, 641, 1127
MaeIII GTNAC 2 cut(s) 494, 847
MalI GATC 4 cut(s) 150, 596, 866, 1002
MboI GATC 4 cut(s) 148, 594, 864, 1000
MboII GAAGA 4 cut(s) 236, 290, 304, 733
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 2 cut(s) 84, 253
MluCI AATT 6 cut(s) 477, 509, 764, 856, 954, 1039
MlyI GAGTC 2 cut(s) 289, 448
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 8 cut(s) 106, 138, 312, 324, 475, 717, 804, 1158
Mph1103I ATGCAT 2 cut(s) 399, 1072
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 9 cut(s) 129, 135, 174, 423, 470, 540, 774, 855, 951
MslI CAYNNNNRTG 1 cut(s) 402
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 1 cut(s) 256
MspR9I CCNGG 1 cut(s) 881
MunI CAATTG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 881
MwoI GCNNNNNNNGC 5 cut(s) 10, 166, 242, 482, 794
NdeI CATATG 1 cut(s) 589
NdeII GATC 4 cut(s) 148, 594, 864, 1000
NlaIII CATG 8 cut(s) 38, 374, 601, 929, 970, 1033, 1070, 1126
NlaIV GGNNCC 3 cut(s) 117, 150, 1146
NmuCI GTSAC 1 cut(s) 494
NsiI ATGCAT 2 cut(s) 399, 1072
NspI RCATGY 1 cut(s) 374
NspV TTCGAA 1 cut(s) 757
PaeI GCATGC 1 cut(s) 374
PagI TCATGA 1 cut(s) 1122
PceI AGGCCT 2 cut(s) 107, 1083
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 4 cut(s) 706, 759, 970, 1025
PflMI CCANNNNNTGG 1 cut(s) 769
PkrI GCNGC 3 cut(s) 43, 73, 76
PleI GAGTC 2 cut(s) 289, 448
PpsI GAGTC 2 cut(s) 289, 448
Ppu21I YACGTR 1 cut(s) 642
PsiI TTATAA 2 cut(s) 338, 669
Psp124BI GAGCTC 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 879
PspFI CCCAGC 2 cut(s) 356, 884
PspGI CCWGG 1 cut(s) 879
PspN4I GGNNCC 3 cut(s) 117, 150, 1146
PspPI GGNCC 1 cut(s) 715
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 402
SacI GAGCTC 1 cut(s) 253
SaqAI TTAA 9 cut(s) 129, 135, 174, 423, 470, 540, 774, 855, 951
SatI GCNGC 3 cut(s) 42, 72, 75
Sau3AI GATC 4 cut(s) 148, 594, 864, 1000
Sau96I GGNCC 1 cut(s) 715
SchI GAGTC 2 cut(s) 289, 448
ScrFI CCNGG 1 cut(s) 881
SduI GDGCHC 2 cut(s) 84, 253
SfaNI GCATC 2 cut(s) 295, 807
SfcI CTRYAG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 757
SinI GGWCC 1 cut(s) 715
SmiMI CAYNNNNRTG 1 cut(s) 402
SmlI CTYRAG 3 cut(s) 281, 303, 443
SmoI CTYRAG 3 cut(s) 281, 303, 443
SnaBI TACGTA 1 cut(s) 642
SphI GCATGC 1 cut(s) 374
Sse9I AATT 6 cut(s) 477, 509, 764, 856, 954, 1039
SseBI AGGCCT 2 cut(s) 107, 1083
SsiI CCGC 4 cut(s) 42, 211, 679, 1087
SspI AATATT 1 cut(s) 544
SspMI CTAG 2 cut(s) 125, 414
SstI GAGCTC 1 cut(s) 253
StuI AGGCCT 2 cut(s) 107, 1083
StyD4I CCNGG 1 cut(s) 879
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 3 cut(s) 232, 421, 1167
TaiI ACGT 3 cut(s) 531, 644, 1130
TaqI TCGA 1 cut(s) 757
TasI AATT 6 cut(s) 477, 509, 764, 856, 954, 1039
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 4 cut(s) 706, 759, 970, 1025
Tru1I TTAA 9 cut(s) 129, 135, 174, 423, 470, 540, 774, 855, 951
Tru9I TTAA 9 cut(s) 129, 135, 174, 423, 470, 540, 774, 855, 951
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 2 cut(s) 71, 74
Tsp45I GTSAC 1 cut(s) 494
TspDTI ATGAA 6 cut(s) 74, 313, 858, 962, 1055, 1106
Van91I CCANNNNNTGG 1 cut(s) 769
VpaK11BI GGWCC 1 cut(s) 715
XapI RAATTY 1 cut(s) 954
XceI RCATGY 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 644
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 2 cut(s) 125, 414
Zsp2I ATGCAT 2 cut(s) 399, 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.