zinc-binding in reverse transcriptase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G26855 |
| rosa_chinensis | RchiOBHm_Chr1g0348231 RchiOBHm_Chr2g0100661 |
| rosa_laevigata | RLG00000001883 |
| rosa_multiflora | Rmu_sc0000178.1_g000007 Rmu_sc0001860.1_g000018 Rmu_sc0002164.1_g000004 Rmu_sc0002680.1_g000020 Rmu_sc0003396.1_g000028 Rmu_sc0005838.1_g000009 Rmu_sc0014037.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00036040 Rroxscaffold_2G00123330 Rroxscaffold_6G00412120 Rroxscaffold_6G00423780 |
| rosa_rugosa | Rorug02G0380000 Rorug04G0017800 |
| rosa_samantha | Rh1AG210900 Rh1CG195200 Rh1DG206900 Rh2CG144900 Rh2DG144400 Rh4AG404100 Rh4BG415300 Rh4DG306300 Rh5AG130500 Rh7AG124200 Rh7CG128100 Rh7DG127800 |
| rosa_wichuraiana | Rw7G025900 Rw7G034690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 292 |
| AclWI | GGATC | 1 cut(s) | 217 |
| AcsI | RAATTY | 1 cut(s) | 279 |
| AdeI | CACNNNGTG | 1 cut(s) | 49 |
| AfaI | GTAC | 1 cut(s) | 143 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 89 |
| AjnI | CCWGG | 1 cut(s) | 53 |
| AluBI | AGCT | 1 cut(s) | 323 |
| AluI | AGCT | 1 cut(s) | 323 |
| AlwI | GGATC | 1 cut(s) | 217 |
| ApoI | RAATTY | 1 cut(s) | 279 |
| AsuHPI | GGTGA | 1 cut(s) | 235 |
| BccI | CCATC | 2 cut(s) | 12, 220 |
| BciT130I | CCWGG | 1 cut(s) | 55 |
| BfaI | CTAG | 1 cut(s) | 153 |
| Bme1390I | CCNGG | 1 cut(s) | 55 |
| BmiI | GGNNCC | 1 cut(s) | 264 |
| BmrFI | CCNGG | 1 cut(s) | 55 |
| BmsI | GCATC | 1 cut(s) | 49 |
| BpmI | CTGGAG | 1 cut(s) | 200 |
| BsaJI | CCNNGG | 1 cut(s) | 54 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 221, 251 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 89 |
| BseBI | CCWGG | 1 cut(s) | 55 |
| BseDI | CCNNGG | 1 cut(s) | 54 |
| BseGI | GGATG | 2 cut(s) | 23, 64 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 89 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 89 |
| Bsp143I | GATC | 3 cut(s) | 175, 190, 209 |
| BspACI | CCGC | 1 cut(s) | 292 |
| BspLI | GGNNCC | 1 cut(s) | 264 |
| BspPI | GGATC | 1 cut(s) | 217 |
| BssECI | CCNNGG | 1 cut(s) | 54 |
| BssMI | GATC | 3 cut(s) | 175, 190, 209 |
| Bst2UI | CCWGG | 1 cut(s) | 55 |
| Bst4CI | ACNGT | 2 cut(s) | 148, 199 |
| BstC8I | GCNNGC | 1 cut(s) | 294 |
| BstF5I | GGATG | 2 cut(s) | 23, 64 |
| BstKTI | GATC | 3 cut(s) | 178, 193, 212 |
| BstMBI | GATC | 3 cut(s) | 175, 190, 209 |
| BstNI | CCWGG | 1 cut(s) | 55 |
| BstSCI | CCNGG | 1 cut(s) | 53 |
| BstX2I | RGATCY | 1 cut(s) | 209 |
| BstYI | RGATCY | 1 cut(s) | 209 |
| BtsCI | GGATG | 2 cut(s) | 23, 64 |
| Cac8I | GCNNGC | 1 cut(s) | 294 |
| Csp6I | GTAC | 1 cut(s) | 142 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 230, 265 |
| CviAII | CATG | 2 cut(s) | 286, 315 |
| CviJI | RGCY | 4 cut(s) | 29, 247, 296, 323 |
| CviKI_1 | RGCY | 4 cut(s) | 29, 247, 296, 323 |
| CviQI | GTAC | 1 cut(s) | 142 |
| DpnI | GATC | 3 cut(s) | 177, 192, 211 |
| DpnII | GATC | 3 cut(s) | 175, 190, 209 |
| DraIII | CACNNNGTG | 1 cut(s) | 49 |
| EcoRII | CCWGG | 1 cut(s) | 53 |
| FaeI | CATG | 2 cut(s) | 289, 318 |
| FaiI | YATR | 6 cut(s) | 118, 162, 218, 287, 299, 316 |
| FatI | CATG | 2 cut(s) | 285, 314 |
| FauI | CCCGC | 1 cut(s) | 285 |
| FokI | GGATG | 2 cut(s) | 30, 71 |
| FspBI | CTAG | 1 cut(s) | 153 |
| GsuI | CTGGAG | 1 cut(s) | 200 |
| Hin1II | CATG | 2 cut(s) | 289, 318 |
| HphI | GGTGA | 1 cut(s) | 235 |
| Hpy166II | GTNNAC | 1 cut(s) | 144 |
| Hpy188I | TCNGA | 2 cut(s) | 38, 214 |
| Hpy188III | TCNNGA | 2 cut(s) | 179, 266 |
| Hpy8I | GTNNAC | 1 cut(s) | 144 |
| HpyAV | CCTTC | 5 cut(s) | 58, 87, 200, 214, 295 |
| HpyCH4III | ACNGT | 2 cut(s) | 148, 199 |
| HpyCH4V | TGCA | 1 cut(s) | 318 |
| Hsp92II | CATG | 2 cut(s) | 289, 318 |
| Kzo9I | GATC | 3 cut(s) | 175, 190, 209 |
| LpnPI | CCDG | 5 cut(s) | 40, 67, 74, 164, 279 |
| LweI | GCATC | 1 cut(s) | 49 |
| MaeI | CTAG | 1 cut(s) | 153 |
| MalI | GATC | 3 cut(s) | 177, 192, 211 |
| MboI | GATC | 3 cut(s) | 175, 190, 209 |
| MboII | GAAGA | 1 cut(s) | 244 |
| MfeI | CAATTG | 1 cut(s) | 101 |
| MflI | RGATCY | 1 cut(s) | 209 |
| MluCI | AATT | 5 cut(s) | 69, 101, 163, 279, 331 |
| MnlI | CCTC | 1 cut(s) | 8 |
| MseI | TTAA | 2 cut(s) | 185, 276 |
| MspR9I | CCNGG | 1 cut(s) | 55 |
| MunI | CAATTG | 1 cut(s) | 101 |
| MvaI | CCWGG | 1 cut(s) | 55 |
| NdeII | GATC | 3 cut(s) | 175, 190, 209 |
| NlaIII | CATG | 2 cut(s) | 289, 318 |
| NlaIV | GGNNCC | 1 cut(s) | 264 |
| Psp6I | CCWGG | 1 cut(s) | 53 |
| PspGI | CCWGG | 1 cut(s) | 53 |
| PspN4I | GGNNCC | 1 cut(s) | 264 |
| PsuI | RGATCY | 1 cut(s) | 209 |
| RsaI | GTAC | 1 cut(s) | 143 |
| RsaNI | GTAC | 1 cut(s) | 142 |
| SaqAI | TTAA | 2 cut(s) | 185, 276 |
| Sau3AI | GATC | 3 cut(s) | 175, 190, 209 |
| ScrFI | CCNGG | 1 cut(s) | 55 |
| SetI | ASST | 5 cut(s) | 113, 225, 264, 325, 330 |
| SfaNI | GCATC | 1 cut(s) | 49 |
| Sse9I | AATT | 5 cut(s) | 69, 101, 163, 279, 331 |
| SsiI | CCGC | 1 cut(s) | 292 |
| SspMI | CTAG | 1 cut(s) | 153 |
| StyD4I | CCNGG | 1 cut(s) | 53 |
| TaaI | ACNGT | 2 cut(s) | 148, 199 |
| TasI | AATT | 5 cut(s) | 69, 101, 163, 279, 331 |
| TatI | WGTACW | 1 cut(s) | 141 |
| Tru1I | TTAA | 2 cut(s) | 185, 276 |
| Tru9I | TTAA | 2 cut(s) | 185, 276 |
| TspDTI | ATGAA | 4 cut(s) | 39, 233, 274, 314 |
| XapI | RAATTY | 1 cut(s) | 279 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 85 |
| XspI | CTAG | 1 cut(s) | 153 |