Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004758

Physical Location & Seq

Genomic Coordinates Reverse (-)

51545425 .. 51546656

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTGGTTTAGATGTCACTTCCAAACTCGCGGCGGCTTTGGCAATTGGAGGGGTGGGTATACCACTGGGTTTTGATGCCTTGCTGACACCTAAATGCGTTGGAGATCAGTCTAGGGTTGAGCCTTTGTTGTTGGAAGGGAAGGAGAACTCATTGCTTCCAGATATTAAGGAGGTTGTTGAGAAAATGCATCCCATGGTTGGTTCTTCTCTTGGAAAGTGGGGTGGAGGTGGAACTGTTGCTTCCCTGCTGAAAAAAGGAAGATTGGGAGATGGTGTTGATCCTGAGCTGTTGGATTCTGATGGGTTTTCAGATGGGGTTGTGCCACTGGTACCGGTTACCCTGAATTCTTCCGGACGTACAGAGGAAGCACAGGATGGAGGTTGCATCTTTCAGCTTTGGTTTGAAGGTTTCCCCTACCAAAAAACTACAATTTCAAGTAGTGAAGCCTTCATCCCCCATTGGTGGAAAGATGGGGACTGGCAAGAAGCACAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

17.58

Weight (kDa)

4.53

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26855
rosa_chinensis	RchiOBHm_Chr1g0348231 RchiOBHm_Chr2g0100661
rosa_laevigata	RLG00000001883
rosa_multiflora	Rmu_sc0000178.1_g000007 Rmu_sc0001860.1_g000018 Rmu_sc0002164.1_g000004 Rmu_sc0002680.1_g000020 Rmu_sc0003396.1_g000028 Rmu_sc0005838.1_g000009 Rmu_sc0014037.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036040 Rroxscaffold_2G00123330 Rroxscaffold_6G00412120 Rroxscaffold_6G00423780
rosa_rugosa	Rorug02G0380000 Rorug04G0017800
rosa_samantha	Rh1AG210900 Rh1CG195200 Rh1DG206900 Rh2CG144900 Rh2DG144400 Rh4AG404100 Rh4BG415300 Rh4DG306300 Rh5AG130500 Rh7AG124200 Rh7CG128100 Rh7DG127800
rosa_wichuraiana	Rw7G025900 Rw7G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	61
AccII	CGCG	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	353
AciI	CCGC	2 cut(s)	32, 35
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	346
AfaI	GTAC	2 cut(s)	333, 361
AfiI	CCNNNNNNNGG	2 cut(s)	200, 465
AgeI	ACCGGT	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	407, 438
AluBI	AGCT	2 cut(s)	289, 397
AluI	AGCT	2 cut(s)	289, 397
AlwI	GGATC	1 cut(s)	275
Aor13HI	TCCGGA	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	346
AsiGI	ACCGGT	1 cut(s)	334
Asp718I	GGTACC	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	331
BccI	CCATC	5 cut(s)	266, 296, 308, 371, 467
BfaI	CTAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	33, 36
BlsI	GCNGC	2 cut(s)	34, 37
BmiI	GGNNCC	1 cut(s)	333
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	3 cut(s)	67, 199, 396
BmuI	ACTGGG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	2 cut(s)	334, 353
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 465
Bse118I	RCCGGY	1 cut(s)	334
Bse1I	ACTGG	3 cut(s)	72, 333, 485
Bse3DI	GCAATG	1 cut(s)	152
BseAI	TCCGGA	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	3 cut(s)	190, 382, 453
BseLI	CCNNNNNNNGG	2 cut(s)	200, 465
BseMI	GCAATG	1 cut(s)	152
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	3 cut(s)	72, 333, 485
Bsh1236I	CGCG	1 cut(s)	32
BshNI	GGYRCC	1 cut(s)	331
BshTI	ACCGGT	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	335, 354
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	2 cut(s)	200, 465
BsmFI	GGGAC	1 cut(s)	491
Bsp13I	TCCGGA	1 cut(s)	353
Bsp143I	GATC	2 cut(s)	106, 280
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	2 cut(s)	32, 35
BspCNI	CTCAG	1 cut(s)	277
BspEI	TCCGGA	1 cut(s)	353
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	333
BspPI	GGATC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	334
BsrI	ACTGG	3 cut(s)	72, 333, 485
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	2 cut(s)	106, 280
BssNAI	GTATAC	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	195
Bst1107I	GTATAC	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	1 cut(s)	195
BstEII	GGTNACC	1 cut(s)	337
BstF5I	GGATG	3 cut(s)	190, 382, 453
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	2 cut(s)	109, 283
BstMBI	GATC	2 cut(s)	106, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstPI	GGTNACC	1 cut(s)	337
BstUI	CGCG	1 cut(s)	32
BstZ17I	GTATAC	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	190, 382, 453
BtsIMutI	CAGTG	2 cut(s)	65, 326
Cfr10I	RCCGGY	1 cut(s)	334
Csp6I	GTAC	2 cut(s)	332, 360
CspAI	ACCGGT	1 cut(s)	334
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	6 cut(s)	5, 38, 124, 289, 397, 449
CviKI_1	RGCY	6 cut(s)	5, 38, 124, 289, 397, 449
CviQI	GTAC	2 cut(s)	332, 360
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	2 cut(s)	108, 282
DpnII	GATC	2 cut(s)	106, 280
Eco130I	CCWWGG	1 cut(s)	195
Eco91I	GGTNACC	1 cut(s)	337
EcoO65I	GGTNACC	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	1 cut(s)	199
FaiI	YATR	2 cut(s)	62, 197
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	33, 36
FokI	GGATG	3 cut(s)	177, 389, 440
Fsp4HI	GCNGC	2 cut(s)	33, 36
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	2 cut(s)	33, 36
HapII	CCGG	2 cut(s)	335, 354
Hin1II	CATG	1 cut(s)	199
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	2 cut(s)	335, 354
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	2 cut(s)	301, 313
Hpy188III	TCNNGA	3 cut(s)	161, 284, 354
Hpy8I	GTNNAC	1 cut(s)	62
HpyAV	CCTTC	4 cut(s)	131, 136, 401, 460
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	2 cut(s)	190, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	1 cut(s)	199
Kpn2I	TCCGGA	1 cut(s)	353
KpnI	GGTACC	1 cut(s)	335
Kzo9I	GATC	2 cut(s)	106, 280
LweI	GCATC	3 cut(s)	67, 199, 396
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	2 cut(s)	16, 337
MalI	GATC	2 cut(s)	108, 282
MboI	GATC	2 cut(s)	106, 280
MboII	GAAGA	3 cut(s)	198, 273, 342
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	3 cut(s)	45, 346, 432
MmeI	TCCRAC	3 cut(s)	82, 114, 273
MnlI	CCTC	5 cut(s)	44, 166, 221, 358, 374
Mph1103I	ATGCAT	1 cut(s)	192
MroI	TCCGGA	1 cut(s)	353
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	94
MspI	CCGG	2 cut(s)	335, 354
MunI	CAATTG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	2 cut(s)	106, 280
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	16
NsiI	ATGCAT	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	296
PinAI	ACCGGT	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	34, 37
PspEI	GGTNACC	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	333
RsaI	GTAC	2 cut(s)	333, 361
RsaNI	GTAC	2 cut(s)	332, 360
RseI	CAYNNNNRTG	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	2 cut(s)	33, 36
Sau3AI	GATC	2 cut(s)	106, 280
SetI	ASST	9 cut(s)	94, 177, 232, 291, 361, 385, 399, 412, 500
SfaNI	GCATC	3 cut(s)	67, 199, 396
SmiMI	CAYNNNNRTG	1 cut(s)	94
Sse9I	AATT	3 cut(s)	45, 346, 432
SsiI	CCGC	2 cut(s)	32, 35
SspMI	CTAG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	361
TasI	AATT	3 cut(s)	45, 346, 432
TauI	GCSGC	2 cut(s)	35, 38
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	2 cut(s)	72, 333
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	442
TspRI	CASTG	2 cut(s)	72, 333
XapI	RAATTY	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	61
XspI	CTAG	1 cut(s)	114
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.