Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004758

Physical Location & Seq

Genomic Coordinates Forward (+)

40475934 .. 40478905

Gene Structure 2972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG206900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGTTCAAATCAATTTGAAGGTCCAATCCCTTCGGTTCTGTCAAAAGTATCTTCTTTGGATCTCTCCAATAATAGACTTTCAGAATCAATTTCTTTCTTATGTGCAAGCAAAGGTAACTACAGCTTGGCTCTCTTTGGCTCGTCGTCTTCATTGGCGGCGCCGCCCTCCTCCACCACTCCGAACTTGTTTGGCTCTGCTCCGTCGTCCGCGGCTCCAACCACTCCCTCATTCCCAAGCTTTTCGAGCTCTTCGTCTGCAGCCCCAACCACTCCTGCATTCTCAAGCTTTCTGAGCTCTCCCTCTGCAGCCTCAACCACTCCTGCATTCTCCAGCTTTCTGAGCTCTTCGTCTGCAGCATCAACAACTCCTATTCCTGCATTCCCATCCTTTTCGAGCTCTTCCGCTGCAGCCTCAACCACTCTTGCCTTCGCAGGCTTTTCGAGCTCTTCTTCTGCAGCTCCAGCCACTTCCTCATTCGCAAGCTGTTCGGGTTTCTTATCATTCCTGAGTTCAGCTCCTGCTAACTTGGGTTTTGCAGGAGCTCCTTCTTCTGCCGTTTCATTGTTTTCCAATGCCTCTGTGCCAGCCTCCTCATCACAAGCACAACCAAGCACTACTCTGCCCGCATTTGGCCTCACTACTTCAGCAACTGCCACTGCAACTACAACGGCAACTGGTACCAGTACCCCTGCAGCTCAGACATCAAGTGCACTTGCTGTGGCTTCTACTAGTGGGTCAGTGTACTATGTGTTGCTTCTTAATTTTTCTTATGGTTGTACCTTGCATCTAAGGTTTTCTTCTATAGTGTTTTGCCCAACTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

275

Amino Acids

26.96

Weight (kDa)

7.66

Isoelectric Point (pI)

58.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26855
rosa_chinensis	RchiOBHm_Chr1g0348231 RchiOBHm_Chr2g0100661
rosa_laevigata	RLG00000001883
rosa_multiflora	Rmu_sc0000178.1_g000007 Rmu_sc0001860.1_g000018 Rmu_sc0002164.1_g000004 Rmu_sc0002680.1_g000020 Rmu_sc0003396.1_g000028 Rmu_sc0005838.1_g000009 Rmu_sc0014037.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036040 Rroxscaffold_2G00123330 Rroxscaffold_6G00412120 Rroxscaffold_6G00423780
rosa_rugosa	Rorug02G0380000 Rorug04G0017800
rosa_samantha	Rh1AG210900 Rh1CG195200 Rh1DG206900 Rh2CG144900 Rh2DG144400 Rh4AG404100 Rh4BG415300 Rh4DG306300 Rh5AG130500 Rh7AG124200 Rh7CG128100 Rh7DG127800
rosa_wichuraiana	Rw7G025900 Rw7G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	680
AccB1I	GGYRCC	2 cut(s)	160, 680
AccII	CGCG	1 cut(s)	212
AciI	CCGC	6 cut(s)	158, 164, 210, 212, 405, 627
AclWI	GGATC	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	630
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	4 cut(s)	682, 688, 746, 781
AfiI	CCNNNNNNNGG	1 cut(s)	632
AgsI	TTSAA	2 cut(s)	9, 20
AhlI	ACTAGT	1 cut(s)	731
Alw21I	GWGCWC	7 cut(s)	251, 299, 347, 401, 449, 547, 715
Alw44I	GTGCAC	1 cut(s)	711
AlwI	GGATC	1 cut(s)	69
AlwNI	CAGNNNCTG	2 cut(s)	521, 653
AoxI	GGCC	1 cut(s)	634
ApaLI	GTGCAC	1 cut(s)	711
ApeKI	GCWGC	7 cut(s)	260, 308, 356, 407, 410, 458, 695
Asp718I	GGTACC	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	715
BanI	GGYRCC	2 cut(s)	160, 680
BanII	GRGCYC	6 cut(s)	251, 299, 347, 401, 449, 547
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	7 cut(s)	251, 299, 347, 401, 449, 547, 715
BbvI	GCAGC	7 cut(s)	272, 320, 368, 394, 422, 470, 707
BccI	CCATC	1 cut(s)	394
BceAI	ACGGC	2 cut(s)	542, 687
BcgI	CGANNNNNNTGC	4 cut(s)	423, 457, 471, 505
BcuI	ACTAGT	1 cut(s)	731
BfaI	CTAG	1 cut(s)	732
BfmI	CTRYAG	8 cut(s)	121, 258, 306, 354, 408, 456, 693, 804
BfoI	RGCGCY	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	3 cut(s)	162, 216, 682
BmsI	GCATC	2 cut(s)	368, 796
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpmI	CTGGAG	2 cut(s)	316, 447
BpuEI	CTTGAG	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	632
Bse1I	ACTGG	2 cut(s)	682, 684
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	386
BseLI	CCNNNNNNNGG	1 cut(s)	632
BseMII	CTCAG	4 cut(s)	284, 332, 500, 713
BseNI	ACTGG	2 cut(s)	682, 684
BseRI	GAGGAG	2 cut(s)	160, 583
BseSI	GKGCMC	1 cut(s)	715
BseXI	GCAGC	7 cut(s)	272, 320, 368, 394, 422, 470, 707
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	636
BshNI	GGYRCC	2 cut(s)	160, 680
BsiHKAI	GWGCWC	7 cut(s)	251, 299, 347, 401, 449, 547, 715
BslI	CCNNNNNNNGG	1 cut(s)	632
BsmI	GAATGC	3 cut(s)	278, 326, 380
BsnI	GGCC	1 cut(s)	636
Bsp1286I	GDGCHC	7 cut(s)	251, 299, 347, 401, 449, 547, 715
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	6 cut(s)	158, 164, 210, 212, 405, 627
BspANI	GGCC	1 cut(s)	636
BspCNI	CTCAG	4 cut(s)	285, 333, 501, 712
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	3 cut(s)	162, 216, 682
BspMAI	CTGCAG	6 cut(s)	262, 310, 358, 412, 460, 697
BspPI	GGATC	1 cut(s)	69
BspQI	GCTCTTC	4 cut(s)	256, 352, 406, 454
BspT107I	GGYRCC	2 cut(s)	160, 680
BsrI	ACTGG	2 cut(s)	682, 684
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	61
BssNI	GRCGYC	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	823
Bst6I	CTCTTC	4 cut(s)	256, 352, 406, 454
BstACI	GRCGYC	1 cut(s)	161
BstC8I	GCNNGC	5 cut(s)	109, 436, 484, 588, 627
BstDEI	CTNAG	5 cut(s)	293, 341, 509, 699, 791
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	386
BstFNI	CGCG	1 cut(s)	212
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	5 cut(s)	246, 294, 342, 444, 464
BstSFI	CTRYAG	8 cut(s)	121, 258, 306, 354, 408, 456, 693, 804
BstSLI	GKGCMC	1 cut(s)	715
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	7 cut(s)	272, 320, 368, 394, 422, 470, 707
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	636
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	386
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	2 cut(s)	657, 747
Cac8I	GCNNGC	5 cut(s)	109, 436, 484, 588, 627
CaiI	CAGNNNCTG	2 cut(s)	521, 653
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	23
Cfr42I	CCGCGG	1 cut(s)	213
Csp6I	GTAC	4 cut(s)	681, 687, 745, 780
CviQI	GTAC	4 cut(s)	681, 687, 745, 780
DdeI	CTNAG	5 cut(s)	293, 341, 509, 699, 791
DinI	GGCGCC	1 cut(s)	162
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	4 cut(s)	256, 352, 406, 454
EarI	CTCTTC	4 cut(s)	256, 352, 406, 454
Ecl136II	GAGCTC	6 cut(s)	249, 297, 345, 399, 447, 545
Eco24I	GRGCYC	6 cut(s)	251, 299, 347, 401, 449, 547
Eco47I	GGWCC	1 cut(s)	23
Eco53kI	GAGCTC	6 cut(s)	249, 297, 345, 399, 447, 545
Eco57I	CTGAAG	1 cut(s)	630
EcoICRI	GAGCTC	6 cut(s)	249, 297, 345, 399, 447, 545
EcoT38I	GRGCYC	6 cut(s)	251, 299, 347, 401, 449, 547
EgeI	GGCGCC	1 cut(s)	162
EheI	GGCGCC	1 cut(s)	162
FaiI	YATR	4 cut(s)	103, 750, 774, 806
FalI	AAGNNNNNCTT	2 cut(s)	784, 816
FauI	CCCGC	1 cut(s)	634
FokI	GGATG	1 cut(s)	373
FriOI	GRGCYC	6 cut(s)	251, 299, 347, 401, 449, 547
FspBI	CTAG	1 cut(s)	732
GlaI	GCGC	1 cut(s)	162
GsuI	CTGGAG	2 cut(s)	316, 447
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	636
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HindIII	AAGCTT	2 cut(s)	238, 286
HinfI	GANTC	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	713, 745
Hpy188I	TCNGA	5 cut(s)	85, 183, 294, 342, 702
Hpy188III	TCNNGA	1 cut(s)	508
Hpy8I	GTNNAC	2 cut(s)	713, 745
Hpy99I	CGWCG	2 cut(s)	148, 208
HpyAV	CCTTC	4 cut(s)	14, 42, 439, 558
HpyCH4III	ACNGT	1 cut(s)	823
HpyF10VI	GCNNNNNNNGC	5 cut(s)	246, 294, 342, 444, 464
HpyF3I	CTNAG	5 cut(s)	293, 341, 509, 699, 791
Hsp92I	GRCGYC	1 cut(s)	161
HspAI	GCGC	1 cut(s)	161
KasI	GGCGCC	1 cut(s)	160
KpnI	GGTACC	1 cut(s)	684
KspI	CCGCGG	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	61
LguI	GCTCTTC	4 cut(s)	256, 352, 406, 454
LmnI	GCTCC	6 cut(s)	205, 220, 466, 523, 542, 550
Lsp1109I	GCAGC	7 cut(s)	272, 320, 368, 394, 422, 470, 707
LweI	GCATC	2 cut(s)	368, 796
MaeI	CTAG	1 cut(s)	732
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	9 cut(s)	45, 141, 243, 339, 393, 441, 444, 543, 792
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	7 cut(s)	251, 299, 347, 401, 449, 547, 715
MluCI	AATT	3 cut(s)	14, 90, 763
Mly113I	GGCGCC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	242
MseI	TTAA	2 cut(s)	762, 826
MspA1I	CMGCKG	2 cut(s)	212, 407
Mva1269I	GAATGC	3 cut(s)	278, 326, 380
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	5 cut(s)	246, 294, 342, 444, 464
NarI	GGCGCC	1 cut(s)	161
NdeII	GATC	1 cut(s)	61
NlaIV	GGNNCC	3 cut(s)	162, 216, 682
PciSI	GCTCTTC	4 cut(s)	256, 352, 406, 454
PcsI	WCGNNNNNNNCGW	1 cut(s)	251
PctI	GAATGC	3 cut(s)	278, 326, 380
PfeI	GAWTC	1 cut(s)	86
PluTI	GGCGCC	1 cut(s)	164
Psp124BI	GAGCTC	6 cut(s)	251, 299, 347, 401, 449, 547
PspN4I	GGNNCC	3 cut(s)	162, 216, 682
PspPI	GGNCC	1 cut(s)	23
PstI	CTGCAG	6 cut(s)	262, 310, 358, 412, 460, 697
PstNI	CAGNNNCTG	2 cut(s)	521, 653
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	4 cut(s)	682, 688, 746, 781
RsaNI	GTAC	4 cut(s)	681, 687, 745, 780
SacI	GAGCTC	6 cut(s)	251, 299, 347, 401, 449, 547
SacII	CCGCGG	1 cut(s)	213
SapI	GCTCTTC	4 cut(s)	256, 352, 406, 454
SaqAI	TTAA	2 cut(s)	762, 826
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	23
SduI	GDGCHC	7 cut(s)	251, 299, 347, 401, 449, 547, 715
SfaNI	GCATC	2 cut(s)	368, 796
SfcI	CTRYAG	8 cut(s)	121, 258, 306, 354, 408, 456, 693, 804
SfoI	GGCGCC	1 cut(s)	162
Sfr303I	CCGCGG	1 cut(s)	213
SgrBI	CCGCGG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
SpeI	ACTAGT	1 cut(s)	731
Sse9I	AATT	3 cut(s)	14, 90, 763
SsiI	CCGC	6 cut(s)	158, 164, 210, 212, 405, 627
SspDI	GGCGCC	1 cut(s)	160
SspMI	CTAG	1 cut(s)	732
SstI	GAGCTC	6 cut(s)	251, 299, 347, 401, 449, 547
TaaI	ACNGT	1 cut(s)	823
TaqI	TCGA	3 cut(s)	245, 395, 443
TasI	AATT	3 cut(s)	14, 90, 763
TatI	WGTACW	1 cut(s)	744
TauI	GCSGC	3 cut(s)	161, 166, 215
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	762, 826
Tru9I	TTAA	2 cut(s)	762, 826
TscAI	CASTG	2 cut(s)	664, 747
TseI	GCWGC	7 cut(s)	260, 308, 356, 407, 410, 458, 695
TspDTI	ATGAA	2 cut(s)	141, 552
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	2 cut(s)	664, 747
VneI	GTGCAC	1 cut(s)	711
VpaK11BI	GGWCC	1 cut(s)	23
XspI	CTAG	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.