Rh1CG195200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004758
Physical Location & Seq
Forward (+)
42776128 .. 42797031
20904 bp
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UTR
Exon/CDS
Intron
Rh1CG195200.1

Sequence Viewer

Length: 348 bp
ATGAGTTCAAATCAATTTGAAGGTCCAATCCCTTCGGTTCTGTCAAAAGTTTCTTGTTCCTACAATGGGACCTCTAAGCCAGGGACAGAACACAACCTCCAAGCAACCCATACAAGCTCTAAACAATACATCTTTCAAGAACATAGCCAACAGAAAGTAGGACACAAGGTACCACTCACTGAGAAGGGTACAGTACAGGATCATGAACTTCCATGGGAGCCCTTCTTCTACTCTAAGAGGAAACAGACCCTGAGGCTTCATTCATCTGTGGCAAGCTCTAACCGGGCAGAAATATGTGGTTCTATAAAGGAAGTTGAAGCAATATTGGAACAAGTACTATGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.96

Weight (kDa)

7.84

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 169
AclWI GGATC 1 cut(s) 207
AfaI GTAC 4 cut(s) 171, 190, 195, 336
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 4 cut(s) 9, 20, 137, 317
AjnI CCWGG 1 cut(s) 79
AloI GAACNNNNNNTCC 2 cut(s) 81, 113
AluBI AGCT 2 cut(s) 117, 276
AluI AGCT 2 cut(s) 117, 276
AlwI GGATC 1 cut(s) 207
AlwNI CAGNNNCTG 1 cut(s) 250
Asp718I GGTACC 1 cut(s) 169
AspS9I GGNCC 2 cut(s) 23, 69
AsuC2I CCSGG 1 cut(s) 284
AvaII GGWCC 2 cut(s) 23, 69
AxyI CCTNAGG 1 cut(s) 251
BanI GGYRCC 1 cut(s) 169
BanII GRGCYC 1 cut(s) 222
BciT130I CCWGG 1 cut(s) 81
BcnI CCSGG 1 cut(s) 284
BmcAI AGTACT 1 cut(s) 336
Bme1390I CCNGG 2 cut(s) 81, 284
Bme18I GGWCC 2 cut(s) 23, 69
BmgT120I GGNCC 2 cut(s) 23, 69
BmiI GGNNCC 3 cut(s) 70, 171, 219
BmrFI CCNGG 2 cut(s) 81, 284
BpuMI CCSGG 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 80, 212
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse21I CCTNAGG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 80, 212
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 171, 242
BshNI GGYRCC 1 cut(s) 169
BsiSI CCGG 1 cut(s) 283
BslFI GGGAC 2 cut(s) 82, 97
BslI CCNNNNNNNGG 1 cut(s) 66
BsmFI GGGAC 2 cut(s) 82, 97
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 1 cut(s) 199
Bsp19I CCATGG 1 cut(s) 212
BspCNI CTCAG 2 cut(s) 172, 243
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 3 cut(s) 70, 171, 219
BspPI GGATC 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 80, 212
BssMI GATC 1 cut(s) 199
BssT1I CCWWGG 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 4 cut(s) 75, 180, 234, 251
BstDSI CCRYGG 1 cut(s) 212
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 79, 282
Bsu36I CCTNAGG 1 cut(s) 251
BtgI CCRYGG 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 274
CaiI CAGNNNCTG 1 cut(s) 250
CciI TCATGA 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 23, 69
Csp6I GTAC 4 cut(s) 170, 189, 194, 335
CviAII CATG 2 cut(s) 203, 213
CviJI RGCY 6 cut(s) 79, 117, 147, 220, 256, 276
CviKI_1 RGCY 6 cut(s) 79, 117, 147, 220, 256, 276
CviQI GTAC 4 cut(s) 170, 189, 194, 335
DdeI CTNAG 4 cut(s) 75, 180, 234, 251
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 212
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 2 cut(s) 23, 69
Eco81I CCTNAGG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 2 cut(s) 206, 216
FaiI YATR 7 cut(s) 111, 144, 204, 214, 295, 305, 340
FaqI GGGAC 2 cut(s) 82, 97
FatI CATG 2 cut(s) 202, 212
FriOI GRGCYC 1 cut(s) 222
HapII CCGG 1 cut(s) 283
Hin1II CATG 2 cut(s) 206, 216
HpaII CCGG 1 cut(s) 283
Hpy188III TCNNGA 2 cut(s) 137, 203
HpyAV CCTTC 4 cut(s) 14, 42, 178, 232
HpyCH4III ACNGT 1 cut(s) 193
HpyF3I CTNAG 4 cut(s) 75, 180, 234, 251
Hsp92II CATG 2 cut(s) 206, 216
KpnI GGTACC 1 cut(s) 173
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 5 cut(s) 66, 93, 182, 263, 296
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 2 cut(s) 14, 343
MnlI CCTC 4 cut(s) 82, 107, 231, 246
MseI TTAA 1 cut(s) 346
MspI CCGG 1 cut(s) 283
MspR9I CCNGG 2 cut(s) 81, 284
MvaI CCWGG 1 cut(s) 81
NciI CCSGG 1 cut(s) 284
NcoI CCATGG 1 cut(s) 212
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 206, 216
NlaIV GGNNCC 3 cut(s) 70, 171, 219
PagI TCATGA 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 3 cut(s) 70, 171, 219
PspPI GGNCC 2 cut(s) 23, 69
PspPPI RGGWCCY 1 cut(s) 69
PstNI CAGNNNCTG 1 cut(s) 250
RsaI GTAC 4 cut(s) 171, 190, 195, 336
RsaNI GTAC 4 cut(s) 170, 189, 194, 335
SaqAI TTAA 1 cut(s) 346
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 2 cut(s) 23, 69
ScaI AGTACT 1 cut(s) 336
ScrFI CCNGG 2 cut(s) 81, 284
SduI GDGCHC 1 cut(s) 222
SetI ASST 6 cut(s) 25, 74, 99, 119, 171, 278
SinI GGWCC 2 cut(s) 23, 69
Sse9I AATT 2 cut(s) 14, 343
SspI AATATT 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 79, 282
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 193
TasI AATT 2 cut(s) 14, 343
TatI WGTACW 2 cut(s) 193, 334
Tru1I TTAA 1 cut(s) 346
Tru9I TTAA 1 cut(s) 346
TscAI CASTG 1 cut(s) 184
TspDTI ATGAA 3 cut(s) 219, 248, 252
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 2 cut(s) 23, 69
ZrmI AGTACT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.