Rroxscaffold_1G00036040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004758
Physical Location & Seq
Forward (+)
52699966 .. 52707747
7782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036040.1

Sequence Viewer

Length: 714 bp
ATGTGGGCGGTTCTCAGCTATGGTGGCTCCACCGTTTTCCTAGAAGGAAGAGTGAGATCGGGAGGAAGTGTACCTGCGACAACGAGCTTCAATGACGAAATTGAGCGGTGCAGCGCGAGACCCAGCATGAATCATATGAGTGAAGTGAAGACTACGGTTTTCAGATTATGCTGGGGCAATAATATGGTTACTTTGGAGGGCAATAATATAGTTACCGGTCACCGGTCCGGTAGCCGGATTCCGGATTCAGATTCCGGTGACCGGTCGCAGGATTCCTATCACCGCAGCGAGTTCTGGTCACCGGTCGCAGGATTCGGTCACCGGTCGCCGGAGTTCGCCACCGGAGTCAAGCAAGAGAAAATTTTACCTTCCAAGATGAACAAGGTGAAAGAAATAGAATTTGACAAATTTGAATGTTGGATGTATCAAGGCTGGCAAATATGGCTATGGCCTCATTCATCTGTGGCAAGCTCTAACCAGGCAGAAATATGTGGTTCTATAAAGGAAGTTGAAGCAATATTGGAACAAACTTCTCAATTGCTAAGATACTTGATCGCCGCCCGCTGCAACTTTCCTTCCATTTTGGTGTGGATGCGGAGTTTCGGTTCGCAACTTACCTTCAATTTCGGATATGTCGGTGACAACACGATTGATTGGCAGGTGAGAGGGATAGCACCGCGCGGAATATTAAATGACCACTTCGCCCCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.77

Weight (kDa)

7.01

Isoelectric Point (pI)

62.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 649
Acc36I ACCTGC 2 cut(s) 82, 649
AccBSI CCGCTC 1 cut(s) 106
AccII CGCG 3 cut(s) 116, 679, 681
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 8 cut(s) 8, 106, 283, 558, 562, 595, 677, 681
AcsI RAATTY 3 cut(s) 360, 398, 407
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 7 cut(s) 222, 234, 241, 261, 268, 308, 328
AgeI ACCGGT 5 cut(s) 215, 222, 261, 301, 321
AgsI TTSAA 4 cut(s) 91, 413, 512, 622
AjnI CCWGG 1 cut(s) 477
AloI GAACNNNNNNTCC 2 cut(s) 589, 621
AluBI AGCT 3 cut(s) 18, 87, 471
AluI AGCT 3 cut(s) 18, 87, 471
Alw26I GTCTC 1 cut(s) 112
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 1 cut(s) 449
ApeKI GCWGC 3 cut(s) 111, 285, 564
ApoI RAATTY 3 cut(s) 360, 398, 407
AsiGI ACCGGT 5 cut(s) 215, 222, 261, 301, 321
AspLEI GCGC 2 cut(s) 116, 681
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 8 cut(s) 212, 269, 272, 291, 311, 397, 650, 673
AvaII GGWCC 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 155
BbvI GCAGC 3 cut(s) 123, 297, 551
BciT130I CCWGG 1 cut(s) 479
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 1 cut(s) 41
BfuAI ACCTGC 2 cut(s) 82, 649
BisI GCNGC 4 cut(s) 112, 286, 558, 565
BlsI GCNGC 4 cut(s) 113, 287, 559, 566
Bme1390I CCNGG 1 cut(s) 479
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 479
BmsI GCATC 1 cut(s) 582
BpiI GAAGAC 1 cut(s) 155
BsaBI GATNNNNATC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 112
BsaWI WCCGGW 9 cut(s) 215, 222, 227, 241, 254, 261, 301, 321, 341
BsaXI ACNNNNNCTCC 4 cut(s) 54, 84, 589, 619
Bsc4I CCNNNNNNNGG 7 cut(s) 222, 234, 241, 261, 268, 308, 328
Bse118I RCCGGY 5 cut(s) 215, 222, 261, 301, 321
Bse8I GATNNNNATC 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 1 cut(s) 479
BseGI GGATG 2 cut(s) 426, 597
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 7 cut(s) 222, 234, 241, 261, 268, 308, 328
BseMII CTCAG 1 cut(s) 28
BseXI GCAGC 3 cut(s) 123, 297, 551
BseYI CCCAGC 2 cut(s) 122, 171
BsgI GTGCAG 1 cut(s) 130
Bsh1236I CGCG 3 cut(s) 116, 679, 681
Bsh1285I CGRYCG 3 cut(s) 266, 306, 326
BshFI GGCC 1 cut(s) 451
BshTI ACCGGT 5 cut(s) 215, 222, 261, 301, 321
BsiEI CGRYCG 3 cut(s) 266, 306, 326
BslI CCNNNNNNNGG 7 cut(s) 222, 234, 241, 261, 268, 308, 328
BsmAI GTCTC 1 cut(s) 112
BsnI GGCC 1 cut(s) 451
Bso31I GGTCTC 1 cut(s) 112
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 2 cut(s) 56, 552
BspACI CCGC 8 cut(s) 8, 106, 283, 558, 562, 595, 677, 681
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 1 cut(s) 27
BspEI TCCGGA 1 cut(s) 241
BspFNI CGCG 3 cut(s) 116, 679, 681
BspLI GGNNCC 1 cut(s) 28
BspMI ACCTGC 2 cut(s) 82, 649
BspTNI GGTCTC 1 cut(s) 112
BsrBI CCGCTC 1 cut(s) 106
BsrFI RCCGGY 5 cut(s) 215, 222, 261, 301, 321
BssAI RCCGGY 5 cut(s) 215, 222, 261, 301, 321
BssMI GATC 2 cut(s) 56, 552
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 2 cut(s) 34, 157
Bst6I CTCTTC 1 cut(s) 43
BstC8I GCNNGC 3 cut(s) 434, 469, 562
BstDEI CTNAG 2 cut(s) 14, 542
BstEII GGTNACC 4 cut(s) 218, 257, 297, 317
BstF5I GGATG 2 cut(s) 426, 597
BstFNI CGCG 3 cut(s) 116, 679, 681
BstHHI GCGC 2 cut(s) 116, 681
BstKTI GATC 2 cut(s) 59, 555
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 2 cut(s) 56, 552
BstMCI CGRYCG 3 cut(s) 266, 306, 326
BstMWI GCNNNNNNNGC 2 cut(s) 24, 442
BstNI CCWGG 1 cut(s) 479
BstPI GGTNACC 4 cut(s) 218, 257, 297, 317
BstSCI CCNGG 1 cut(s) 477
BstUI CGCG 3 cut(s) 116, 679, 681
BstV1I GCAGC 3 cut(s) 123, 297, 551
BstV2I GAAGAC 1 cut(s) 155
BsuRI GGCC 1 cut(s) 451
BtsCI GGATG 2 cut(s) 426, 597
BveI ACCTGC 2 cut(s) 82, 649
Cac8I GCNNGC 3 cut(s) 434, 469, 562
CfoI GCGC 2 cut(s) 116, 681
Cfr10I RCCGGY 5 cut(s) 215, 222, 261, 301, 321
Cfr13I GGNCC 1 cut(s) 225
CpoI CGGWCCG 1 cut(s) 225
Csp6I GTAC 1 cut(s) 71
CspAI ACCGGT 5 cut(s) 215, 222, 261, 301, 321
CspI CGGWCCG 1 cut(s) 225
CviAII CATG 1 cut(s) 127
CviJI RGCY 8 cut(s) 18, 27, 87, 234, 432, 445, 451, 471
CviKI_1 RGCY 8 cut(s) 18, 27, 87, 234, 432, 445, 451, 471
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 2 cut(s) 14, 542
DpnI GATC 2 cut(s) 58, 554
DpnII GATC 2 cut(s) 56, 552
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 225
Eco91I GGTNACC 4 cut(s) 218, 257, 297, 317
EcoO65I GGTNACC 4 cut(s) 218, 257, 297, 317
EcoRII CCWGG 1 cut(s) 477
FaeI CATG 1 cut(s) 130
FatI CATG 1 cut(s) 126
FauI CCCGC 1 cut(s) 569
FauNDI CATATG 1 cut(s) 135
Fnu4HI GCNGC 4 cut(s) 112, 286, 558, 565
FokI GGATG 2 cut(s) 433, 604
Fsp4HI GCNGC 4 cut(s) 112, 286, 558, 565
FspBI CTAG 1 cut(s) 41
GlaI GCGC 2 cut(s) 115, 680
GluI GCNGC 4 cut(s) 112, 286, 558, 565
GsaI CCCAGC 2 cut(s) 126, 175
HaeIII GGCC 1 cut(s) 451
HhaI GCGC 2 cut(s) 116, 681
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 2 cut(s) 114, 679
HinP1I GCGC 2 cut(s) 114, 679
HinfI GANTC 7 cut(s) 130, 238, 245, 251, 272, 312, 345
HphI GGTGA 8 cut(s) 212, 269, 272, 291, 311, 397, 650, 673
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 3 cut(s) 164, 250, 629
Hpy188III TCNNGA 2 cut(s) 60, 242
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 4 cut(s) 38, 378, 585, 628
HpyCH4III ACNGT 2 cut(s) 34, 157
HpyCH4V TGCA 2 cut(s) 111, 567
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 442
HpyF3I CTNAG 2 cut(s) 14, 542
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 2 cut(s) 114, 679
Kpn2I TCCGGA 1 cut(s) 241
Kzo9I GATC 2 cut(s) 56, 552
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 3 cut(s) 123, 297, 551
LweI GCATC 1 cut(s) 582
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 7 cut(s) 187, 211, 218, 257, 297, 317, 638
MalI GATC 2 cut(s) 58, 554
MbiI CCGCTC 1 cut(s) 106
MboI GATC 2 cut(s) 56, 552
MboII GAAGA 2 cut(s) 60, 160
MfeI CAATTG 1 cut(s) 536
MluCI AATT 6 cut(s) 99, 360, 398, 407, 536, 622
MlyI GAGTC 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 398
MnlI CCTC 4 cut(s) 56, 190, 462, 659
MroI TCCGGA 1 cut(s) 241
MseI TTAA 1 cut(s) 689
MslI CAYNNNNRTG 2 cut(s) 138, 584
MspA1I CMGCKG 1 cut(s) 564
MspR9I CCNGG 1 cut(s) 479
MunI CAATTG 1 cut(s) 536
MvaI CCWGG 1 cut(s) 479
MvnI CGCG 3 cut(s) 116, 679, 681
MwoI GCNNNNNNNGC 2 cut(s) 24, 442
NdeI CATATG 1 cut(s) 135
NdeII GATC 2 cut(s) 56, 552
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 28
NmuCI GTSAC 5 cut(s) 218, 257, 297, 317, 638
PaqCI CACCTGC 1 cut(s) 649
PfeI GAWTC 6 cut(s) 130, 238, 245, 251, 272, 312
PinAI ACCGGT 5 cut(s) 215, 222, 261, 301, 321
PkrI GCNGC 4 cut(s) 113, 287, 559, 566
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 477
PspEI GGTNACC 4 cut(s) 218, 257, 297, 317
PspFI CCCAGC 2 cut(s) 122, 171
PspGI CCWGG 1 cut(s) 477
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 225
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
RseI CAYNNNNRTG 2 cut(s) 138, 584
Rsr2I CGGWCCG 1 cut(s) 225
RsrII CGGWCCG 1 cut(s) 225
SaqAI TTAA 1 cut(s) 689
SatI GCNGC 4 cut(s) 112, 286, 558, 565
Sau3AI GATC 2 cut(s) 56, 552
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 479
SetI ASST 8 cut(s) 20, 76, 89, 370, 387, 473, 620, 663
SfaNI GCATC 1 cut(s) 582
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 2 cut(s) 138, 584
Sse9I AATT 6 cut(s) 99, 360, 398, 407, 536, 622
SsiI CCGC 8 cut(s) 8, 106, 283, 558, 562, 595, 677, 681
SspI AATATT 2 cut(s) 519, 687
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 34, 157
TaqII GACCGA 1 cut(s) 305
TasI AATT 6 cut(s) 99, 360, 398, 407, 536, 622
TauI GCSGC 1 cut(s) 560
TfiI GAWTC 6 cut(s) 130, 238, 245, 251, 272, 312
Tru1I TTAA 1 cut(s) 689
Tru9I TTAA 1 cut(s) 689
TseFI GTSAC 5 cut(s) 218, 257, 297, 317, 638
TseI GCWGC 3 cut(s) 111, 285, 564
Tsp45I GTSAC 5 cut(s) 218, 257, 297, 317, 638
TspDTI ATGAA 3 cut(s) 143, 392, 447
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 3 cut(s) 360, 398, 407
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.