Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002680.1

Orthogroup ID

OG0004758

Physical Location & Seq

Genomic Coordinates Reverse (-)

82257 .. 85040

Gene Structure 2784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002680.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgccctatgtcaagcacctaaggaagtacagccttgattcagtcaatgaaacacaagaaataacgttcgaaaccctaaatcgaaccaaaatccccaaagtggagccaatcgaggcaaaaccacatccgagaccttccaaagtctctggaatactcccacgattgatgtgtccaaaccacaagtcgatcggacgctcggatcctcacggatcgaataacaacctttctgatgaaggtgatttcggccttgcagcgtccaccacagctcgaatcatgaagaatcacttccacagacgtgtagaggaggttgaggcgaagaaagcccacttggaatctcgttcgatggtggccagaggaggaagaaatcggtcggcaaagtggagagcaacatcacctcgatcaaaagcatcacctggaaccgctcgtgcacgactcaccaccagatttgctaccgtttgccatccatatccaatccacgccggcctccccataaactaccgattagccttggcttctgatacaccacagcaacctcgccgcccacgctcttgggctcaacgccatgagccaaccccaaagatcagtgccgtgcacaacctttaccttgctcagataacagcagcaagccccgcatcagcactgcccatctgccagccccgcatccggccgcaaccacagcccagcgcgactccgcctgcgcagataacagcagcaagcacgacctcagcacacgcctgcagcaacccctcccccgcccccgcctacagcaaccccgcccccgcttgcagcagcctgcacgcctcactcctcctagcccagtcactggcccgcccaggcccttcgctcgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

30.76

Weight (kDa)

10.6

Isoelectric Point (pI)

60.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26855
rosa_chinensis	RchiOBHm_Chr1g0348231 RchiOBHm_Chr2g0100661
rosa_laevigata	RLG00000001883
rosa_multiflora	Rmu_sc0000178.1_g000007 Rmu_sc0001860.1_g000018 Rmu_sc0002164.1_g000004 Rmu_sc0002680.1_g000020 Rmu_sc0003396.1_g000028 Rmu_sc0005838.1_g000009 Rmu_sc0014037.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036040 Rroxscaffold_2G00123330 Rroxscaffold_6G00412120 Rroxscaffold_6G00423780
rosa_rugosa	Rorug02G0380000 Rorug04G0017800
rosa_samantha	Rh1AG210900 Rh1CG195200 Rh1DG206900 Rh2CG144900 Rh2DG144400 Rh4AG404100 Rh4BG415300 Rh4DG306300 Rh5AG130500 Rh7AG124200 Rh7CG128100 Rh7DG127800
rosa_wichuraiana	Rw7G025900 Rw7G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	699
AccB7I	CCANNNNNTGG	1 cut(s)	823
AccBSI	CCGCTC	1 cut(s)	422
AccII	CGCG	1 cut(s)	686
AclI	AACGTT	1 cut(s)	65
AclWI	GGATC	3 cut(s)	194, 207, 217
AcoI	YGGCCR	2 cut(s)	348, 665
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	3 cut(s)	100, 663, 823
AflIII	ACRYGT	1 cut(s)	295
AjiI	CACGTC	1 cut(s)	296
AjnI	CCWGG	2 cut(s)	412, 832
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AleI	CACNNNNGTG	1 cut(s)	294
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw21I	GWGCWC	2 cut(s)	430, 594
Alw26I	GTCTC	2 cut(s)	124, 148
Alw44I	GTGCAC	2 cut(s)	426, 590
AlwI	GGATC	3 cut(s)	194, 207, 217
AlwNI	CAGNNNCTG	1 cut(s)	823
AoxI	GGCC	6 cut(s)	244, 348, 481, 665, 825, 835
ApaLI	GTGCAC	2 cut(s)	426, 590
ApeKI	GCWGC	6 cut(s)	251, 620, 710, 738, 786, 789
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	686, 700
AspS9I	GGNCC	2 cut(s)	826, 836
AsuHPI	GGTGA	4 cut(s)	248, 384, 402, 427
AsuII	TTCGAA	1 cut(s)	69
AxyI	CCTNAGG	1 cut(s)	20
BaeGI	GKGCMC	2 cut(s)	430, 594
BalI	TGGCCA	1 cut(s)	350
BamHI	GGATCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	556
BauI	CACGAG	1 cut(s)	423
Bbv12I	GWGCWC	2 cut(s)	430, 594
BbvCI	CCTCAGC	1 cut(s)	724
BbvI	GCAGC	6 cut(s)	263, 632, 722, 750, 798, 801
BccI	CCATC	3 cut(s)	337, 468, 653
BceAI	ACGGC	1 cut(s)	572
BciT130I	CCWGG	2 cut(s)	414, 834
BcoDI	GTCTC	2 cut(s)	124, 148
BfaI	CTAG	2 cut(s)	812, 850
BfmI	CTRYAG	2 cut(s)	736, 763
BisI	GCNGC	8 cut(s)	252, 538, 621, 668, 711, 739, 787, 790
BlsI	GCNGC	8 cut(s)	253, 539, 622, 669, 712, 740, 788, 791
Bme1390I	CCNGG	2 cut(s)	414, 834
BmgBI	CACGTC	1 cut(s)	296
BmgT120I	GGNCC	2 cut(s)	826, 836
BmiI	GGNNCC	3 cut(s)	105, 201, 418
BmrFI	CCNGG	2 cut(s)	414, 834
BmrI	ACTGGG	1 cut(s)	811
BmsI	GCATC	3 cut(s)	416, 641, 669
BmuI	ACTGGG	1 cut(s)	811
Bpu10I	CCTNAGC	1 cut(s)	724
Bpu14I	TTCGAA	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	507, 832
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 663, 823
Bse118I	RCCGGY	1 cut(s)	479
Bse1I	ACTGG	2 cut(s)	817, 828
Bse21I	CCTNAGG	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	414, 834
BseDI	CCNNGG	2 cut(s)	507, 832
BseGI	GGATG	3 cut(s)	124, 460, 660
BseLI	CCNNNNNNNGG	3 cut(s)	100, 663, 823
BseMII	CTCAG	2 cut(s)	623, 738
BseNI	ACTGG	2 cut(s)	817, 828
BseRI	GAGGAG	3 cut(s)	317, 369, 797
BseSI	GKGCMC	2 cut(s)	430, 594
BseX3I	CGGCCG	1 cut(s)	665
BseXI	GCAGC	6 cut(s)	263, 632, 722, 750, 798, 801
BseYI	CCCAGC	1 cut(s)	680
BsgI	GTGCAG	1 cut(s)	779
Bsh1236I	CGCG	1 cut(s)	686
Bsh1285I	CGRYCG	3 cut(s)	189, 371, 668
BshFI	GGCC	6 cut(s)	246, 350, 483, 667, 827, 837
BsiEI	CGRYCG	3 cut(s)	189, 371, 668
BsiHKAI	GWGCWC	2 cut(s)	430, 594
BsiSI	CCGG	2 cut(s)	480, 664
BslI	CCNNNNNNNGG	3 cut(s)	100, 663, 823
BsmAI	GTCTC	2 cut(s)	124, 148
BsnI	GGCC	6 cut(s)	246, 350, 483, 667, 827, 837
Bso31I	GGTCTC	1 cut(s)	124
Bsp119I	TTCGAA	1 cut(s)	69
Bsp1286I	GDGCHC	3 cut(s)	430, 556, 594
Bsp143I	GATC	5 cut(s)	186, 199, 209, 398, 579
BspANI	GGCC	6 cut(s)	246, 350, 483, 667, 827, 837
BspCNI	CTCAG	2 cut(s)	622, 737
BspFNI	CGCG	1 cut(s)	686
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	3 cut(s)	105, 201, 418
BspMAI	CTGCAG	1 cut(s)	740
BspPI	GGATC	3 cut(s)	194, 207, 217
BspT104I	TTCGAA	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	124
BsrBI	CCGCTC	1 cut(s)	422
BsrFI	RCCGGY	1 cut(s)	479
BsrI	ACTGG	2 cut(s)	817, 828
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	2 cut(s)	507, 832
BssMI	GATC	5 cut(s)	186, 199, 209, 398, 579
BssSI	CACGAG	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	507
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	2 cut(s)	414, 834
Bst4CI	ACNGT	1 cut(s)	454
BstBI	TTCGAA	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	20, 609, 724
BstF5I	GGATG	3 cut(s)	124, 460, 660
BstFNI	CGCG	1 cut(s)	686
BstHHI	GCGC	2 cut(s)	686, 700
BstKTI	GATC	5 cut(s)	189, 202, 212, 401, 582
BstMAI	GTCTC	2 cut(s)	124, 148
BstMBI	GATC	5 cut(s)	186, 199, 209, 398, 579
BstMCI	CGRYCG	3 cut(s)	189, 371, 668
BstMWI	GCNNNNNNNGC	5 cut(s)	320, 543, 629, 657, 676
BstNI	CCWGG	2 cut(s)	414, 834
BstSCI	CCNGG	2 cut(s)	412, 832
BstSFI	CTRYAG	2 cut(s)	736, 763
BstSLI	GKGCMC	2 cut(s)	430, 594
BstUI	CGCG	1 cut(s)	686
BstV1I	GCAGC	6 cut(s)	263, 632, 722, 750, 798, 801
BstX2I	RGATCY	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	549
BstYI	RGATCY	1 cut(s)	199
BstZI	CGGCCG	1 cut(s)	665
Bsu36I	CCTNAGG	1 cut(s)	20
BsuRI	GGCC	6 cut(s)	246, 350, 483, 667, 827, 837
BtrI	CACGTC	1 cut(s)	296
BtsCI	GGATG	3 cut(s)	124, 460, 660
BtsI	GCAGTG	1 cut(s)	638
BtsIMutI	CAGTG	3 cut(s)	589, 638, 821
CaiI	CAGNNNCTG	1 cut(s)	823
CciI	TCATGA	1 cut(s)	273
CfoI	GCGC	2 cut(s)	686, 700
Cfr10I	RCCGGY	1 cut(s)	479
Cfr13I	GGNCC	2 cut(s)	826, 836
CseI	GACGC	2 cut(s)	201, 243
Csp6I	GTAC	1 cut(s)	28
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	2 cut(s)	274, 563
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	3 cut(s)	20, 609, 724
DpnI	GATC	5 cut(s)	188, 201, 211, 400, 581
DpnII	GATC	5 cut(s)	186, 199, 209, 398, 579
EaeI	YGGCCR	2 cut(s)	348, 665
EagI	CGGCCG	1 cut(s)	665
EciI	GGCGGA	1 cut(s)	681
EclXI	CGGCCG	1 cut(s)	665
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	556
Eco31I	GGTCTC	1 cut(s)	124
Eco52I	CGGCCG	1 cut(s)	665
Eco81I	CCTNAGG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	836
EcoRII	CCWGG	2 cut(s)	412, 832
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	2 cut(s)	277, 566
FaiI	YATR	5 cut(s)	9, 275, 466, 491, 564
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	2 cut(s)	273, 562
FauI	CCCGC	7 cut(s)	637, 665, 760, 766, 781, 787, 836
Fnu4HI	GCNGC	8 cut(s)	252, 538, 621, 668, 711, 739, 787, 790
FokI	GGATG	3 cut(s)	111, 447, 647
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	8 cut(s)	252, 538, 621, 668, 711, 739, 787, 790
FspBI	CTAG	2 cut(s)	812, 850
FspI	TGCGCA	1 cut(s)	699
GlaI	GCGC	2 cut(s)	685, 699
GluI	GCNGC	8 cut(s)	252, 538, 621, 668, 711, 739, 787, 790
GsaI	CCCAGC	1 cut(s)	684
HaeIII	GGCC	6 cut(s)	246, 350, 483, 667, 827, 837
HapII	CCGG	2 cut(s)	480, 664
HgaI	GACGC	2 cut(s)	201, 243
HhaI	GCGC	2 cut(s)	686, 700
Hin1II	CATG	2 cut(s)	277, 566
Hin6I	GCGC	2 cut(s)	684, 698
HinP1I	GCGC	2 cut(s)	684, 698
HinfI	GANTC	6 cut(s)	38, 270, 280, 332, 432, 688
HpaII	CCGG	2 cut(s)	480, 664
HphI	GGTGA	4 cut(s)	248, 384, 402, 427
Hpy166II	GTNNAC	3 cut(s)	258, 428, 592
Hpy188I	TCNGA	6 cut(s)	129, 191, 199, 229, 517, 612
Hpy188III	TCNNGA	2 cut(s)	147, 274
Hpy8I	GTNNAC	3 cut(s)	258, 428, 592
HpyAV	CCTTC	3 cut(s)	144, 227, 849
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4IV	ACGT	2 cut(s)	65, 295
HpyCH4V	TGCA	6 cut(s)	251, 428, 592, 738, 786, 796
HpyF10VI	GCNNNNNNNGC	5 cut(s)	320, 543, 629, 657, 676
HpyF3I	CTNAG	3 cut(s)	20, 609, 724
HpySE526I	ACGT	2 cut(s)	65, 295
Hsp92II	CATG	2 cut(s)	277, 566
HspAI	GCGC	2 cut(s)	684, 698
KroI	GCCGGC	1 cut(s)	479
KroNI	GCCGGC	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	186, 199, 209, 398, 579
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	6 cut(s)	263, 632, 722, 750, 798, 801
LweI	GCATC	3 cut(s)	416, 641, 669
MaeI	CTAG	2 cut(s)	812, 850
MaeII	ACGT	2 cut(s)	65, 295
MaeIII	GTNAC	1 cut(s)	819
MalI	GATC	5 cut(s)	188, 201, 211, 400, 581
MbiI	CCGCTC	1 cut(s)	422
MboI	GATC	5 cut(s)	186, 199, 209, 398, 579
MboII	GAAGA	3 cut(s)	289, 328, 372
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	3 cut(s)	430, 556, 594
MlsI	TGGCCA	1 cut(s)	350
MluNI	TGGCCA	1 cut(s)	350
MlyI	GAGTC	2 cut(s)	426, 682
Mox20I	TGGCCA	1 cut(s)	350
MroNI	GCCGGC	1 cut(s)	479
MroXI	GAANNNNTTC	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	350
MspI	CCGG	2 cut(s)	480, 664
MspR9I	CCNGG	2 cut(s)	414, 834
MvaI	CCWGG	2 cut(s)	414, 834
MvnI	CGCG	1 cut(s)	686
MwoI	GCNNNNNNNGC	5 cut(s)	320, 543, 629, 657, 676
NaeI	GCCGGC	1 cut(s)	481
NdeII	GATC	5 cut(s)	186, 199, 209, 398, 579
NgoMIV	GCCGGC	1 cut(s)	479
NlaIII	CATG	2 cut(s)	277, 566
NlaIV	GGNNCC	3 cut(s)	105, 201, 418
NmuCI	GTSAC	1 cut(s)	819
NsbI	TGCGCA	1 cut(s)	699
NspV	TTCGAA	1 cut(s)	69
OliI	CACNNNNGTG	1 cut(s)	294
PagI	TCATGA	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	4 cut(s)	38, 270, 280, 332
PflMI	CCANNNNNTGG	1 cut(s)	823
PkrI	GCNGC	8 cut(s)	253, 539, 622, 669, 712, 740, 788, 791
Ple19I	CGATCG	1 cut(s)	189
PleI	GAGTC	2 cut(s)	426, 682
PpsI	GAGTC	2 cut(s)	426, 682
Psp1406I	AACGTT	1 cut(s)	65
Psp6I	CCWGG	2 cut(s)	412, 832
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	2 cut(s)	412, 832
PspN4I	GGNNCC	3 cut(s)	105, 201, 418
PspPI	GGNCC	2 cut(s)	826, 836
PstI	CTGCAG	1 cut(s)	740
PstNI	CAGNNNCTG	1 cut(s)	823
PsuI	RGATCY	1 cut(s)	199
PvuI	CGATCG	1 cut(s)	189
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	294
SatI	GCNGC	8 cut(s)	252, 538, 621, 668, 711, 739, 787, 790
Sau3AI	GATC	5 cut(s)	186, 199, 209, 398, 579
Sau96I	GGNCC	2 cut(s)	826, 836
SchI	GAGTC	2 cut(s)	426, 682
ScrFI	CCNGG	2 cut(s)	414, 834
SduI	GDGCHC	3 cut(s)	430, 556, 594
SfaNI	GCATC	3 cut(s)	416, 641, 669
SfcI	CTRYAG	2 cut(s)	736, 763
SfuI	TTCGAA	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	294
SspMI	CTAG	2 cut(s)	812, 850
StyD4I	CCNGG	2 cut(s)	412, 832
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	1 cut(s)	454
TaiI	ACGT	2 cut(s)	68, 298
TaqI	TCGA	8 cut(s)	69, 82, 111, 185, 212, 268, 341, 397
TaqII	GACCGA	1 cut(s)	357
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	2 cut(s)	540, 670
TfiI	GAWTC	4 cut(s)	38, 270, 280, 332
TscAI	CASTG	3 cut(s)	589, 645, 828
TseFI	GTSAC	1 cut(s)	819
TseI	GCWGC	6 cut(s)	251, 620, 710, 738, 786, 789
Tsp45I	GTSAC	1 cut(s)	819
TspDTI	ATGAA	3 cut(s)	63, 246, 290
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	3 cut(s)	589, 645, 828
Van91I	CCANNNNNTGG	1 cut(s)	823
VneI	GTGCAC	2 cut(s)	426, 590
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	2 cut(s)	812, 850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.