Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002164.1

Orthogroup ID

OG0004758

Physical Location & Seq

Genomic Coordinates Reverse (-)

15461 .. 16453

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002164.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgctcagttttgagaaatcagcagtggctttcaattctcaagtgggggaagtagaacagtctgagtatagtggtcttctgcaaatgcctattgtgccattccatgaaagttatttgggactaccaacaatcgttgggaggaataagaagtctgctttcaagaaagtcaaggacaggttgggtaagagagttacagggtggaaagaaaatttgatgtttaaggcaggaaaattgattggaaatggagaaactacggggatttatagtcacccatggataccaagacctgtaaatttcaaaccgtacactccagcaagtgtggcattggatactctggtaagctttttgatgtcggggacaggaggatggaatgaagcctttatccgagaacactttgtgtccggggatgcggaggcaattctttccattccacttccgggaaggcaacaattggataggtggatatggcatttcacagcaaagggggagtacacagtttctagcggctataatttggctatagatctggagttgagagaggaaacagttggcgaaggatctgatatgaaggtgatggagaagatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase RVT_1 zf-RVT

Protein Analysis

195

Amino Acids

21.79

Weight (kDa)

6.92

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26855
rosa_chinensis	RchiOBHm_Chr1g0348231 RchiOBHm_Chr2g0100661
rosa_laevigata	RLG00000001883
rosa_multiflora	Rmu_sc0000178.1_g000007 Rmu_sc0001860.1_g000018 Rmu_sc0002164.1_g000004 Rmu_sc0002680.1_g000020 Rmu_sc0003396.1_g000028 Rmu_sc0005838.1_g000009 Rmu_sc0014037.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036040 Rroxscaffold_2G00123330 Rroxscaffold_6G00412120 Rroxscaffold_6G00423780
rosa_rugosa	Rorug02G0380000 Rorug04G0017800
rosa_samantha	Rh1AG210900 Rh1CG195200 Rh1DG206900 Rh2CG144900 Rh2DG144400 Rh4AG404100 Rh4BG415300 Rh4DG306300 Rh5AG130500 Rh7AG124200 Rh7CG128100 Rh7DG127800
rosa_wichuraiana	Rw7G025900 Rw7G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	410, 504
AclWI	GGATC	1 cut(s)	565
AcsI	RAATTY	2 cut(s)	208, 292
AdeI	CACNNNGTG	1 cut(s)	397
AfaI	GTAC	2 cut(s)	305, 491
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	3 cut(s)	34, 160, 298
AluBI	AGCT	1 cut(s)	342
AluI	AGCT	1 cut(s)	342
AlwI	GGATC	1 cut(s)	565
ApoI	RAATTY	2 cut(s)	208, 292
AsuC2I	CCSGG	2 cut(s)	403, 438
AsuHPI	GGTGA	2 cut(s)	260, 583
BaeI	ACNNNNGTAYC	2 cut(s)	321, 354
BbsI	GAAGAC	1 cut(s)	68
BccI	CCATC	2 cut(s)	360, 568
BciVI	GTATCC	2 cut(s)	270, 322
BcnI	CCSGG	2 cut(s)	403, 438
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	1 cut(s)	519
BfuI	GTATCC	2 cut(s)	270, 322
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	1 cut(s)	505
BlsI	GCNGC	1 cut(s)	506
Bme1390I	CCNGG	2 cut(s)	403, 438
BmrFI	CCNGG	2 cut(s)	403, 438
BmsI	GCATC	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	2 cut(s)	294, 548
BpuEI	CTTGAG	1 cut(s)	24
BpuMI	CCSGG	2 cut(s)	403, 438
BsaJI	CCNNGG	2 cut(s)	272, 402
BsaXI	ACNNNNNCTCC	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
BseDI	CCNNGG	2 cut(s)	272, 402
BseGI	GGATG	2 cut(s)	371, 412
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	2 cut(s)	19, 54
BsiSI	CCGG	2 cut(s)	402, 437
BslFI	GGGAC	2 cut(s)	132, 370
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmFI	GGGAC	2 cut(s)	132, 370
Bsp143I	GATC	2 cut(s)	523, 557
Bsp19I	CCATGG	1 cut(s)	272
BspACI	CCGC	2 cut(s)	410, 504
BspCNI	CTCAG	2 cut(s)	18, 55
BspPI	GGATC	1 cut(s)	565
BssECI	CCNNGG	2 cut(s)	272, 402
BssMI	GATC	2 cut(s)	523, 557
BssT1I	CCWWGG	1 cut(s)	272
Bst4CI	ACNGT	4 cut(s)	60, 303, 496, 547
BstDEI	CTNAG	2 cut(s)	5, 63
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	2 cut(s)	371, 412
BstKTI	GATC	2 cut(s)	526, 560
BstMBI	GATC	2 cut(s)	523, 557
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 320
BstSCI	CCNGG	2 cut(s)	401, 436
BstSFI	CTRYAG	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	2 cut(s)	523, 557
BstYI	RGATCY	2 cut(s)	523, 557
BsuI	GTATCC	2 cut(s)	270, 322
BtgI	CCRYGG	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	371, 412
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Csp6I	GTAC	2 cut(s)	304, 490
CviAII	CATG	2 cut(s)	104, 273
CviJI	RGCY	5 cut(s)	29, 342, 377, 507, 518
CviKI_1	RGCY	5 cut(s)	29, 342, 377, 507, 518
CviQI	GTAC	2 cut(s)	304, 490
DdeI	CTNAG	2 cut(s)	5, 63
DpnI	GATC	2 cut(s)	525, 559
DpnII	GATC	2 cut(s)	523, 557
DraIII	CACNNNGTG	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	2 cut(s)	107, 276
FaiI	YATR	8 cut(s)	69, 105, 264, 274, 466, 510, 521, 566
FaqI	GGGAC	2 cut(s)	132, 370
FatI	CATG	2 cut(s)	103, 272
Fnu4HI	GCNGC	1 cut(s)	505
FokI	GGATG	2 cut(s)	378, 419
Fsp4HI	GCNGC	1 cut(s)	505
FspBI	CTAG	1 cut(s)	501
GluI	GCNGC	1 cut(s)	505
GsuI	CTGGAG	2 cut(s)	294, 548
HapII	CCGG	2 cut(s)	402, 437
Hin1II	CATG	2 cut(s)	107, 276
HindIII	AAGCTT	1 cut(s)	340
HpaII	CCGG	2 cut(s)	402, 437
HphI	GGTGA	2 cut(s)	260, 583
Hpy166II	GTNNAC	2 cut(s)	306, 492
Hpy188I	TCNGA	3 cut(s)	64, 386, 562
Hpy188III	TCNNGA	2 cut(s)	160, 527
Hpy8I	GTNNAC	2 cut(s)	306, 492
HpyAV	CCTTC	3 cut(s)	435, 548, 562
HpyCH4III	ACNGT	4 cut(s)	60, 303, 496, 547
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 320
HpyF3I	CTNAG	2 cut(s)	5, 63
Hsp92II	CATG	2 cut(s)	107, 276
Kzo9I	GATC	2 cut(s)	523, 557
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	1 cut(s)	501
MaeIII	GTNAC	2 cut(s)	190, 266
MalI	GATC	2 cut(s)	525, 559
MboI	GATC	2 cut(s)	523, 557
MboII	GAAGA	1 cut(s)	68
MfeI	CAATTG	1 cut(s)	449
MflI	RGATCY	2 cut(s)	523, 557
MluCI	AATT	7 cut(s)	34, 208, 230, 292, 417, 449, 511
MnlI	CCTC	4 cut(s)	132, 356, 406, 532
MseI	TTAA	1 cut(s)	219
MspI	CCGG	2 cut(s)	402, 437
MspR9I	CCNGG	2 cut(s)	403, 438
MunI	CAATTG	1 cut(s)	449
MwoI	GCNNNNNNNGC	2 cut(s)	94, 320
NciI	CCSGG	2 cut(s)	403, 438
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	2 cut(s)	523, 557
NlaIII	CATG	2 cut(s)	107, 276
NmuCI	GTSAC	1 cut(s)	266
PfoI	TCCNGGA	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	506
PsuI	RGATCY	2 cut(s)	523, 557
RsaI	GTAC	2 cut(s)	305, 491
RsaNI	GTAC	2 cut(s)	304, 490
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	505
Sau3AI	GATC	2 cut(s)	523, 557
ScrFI	CCNGG	2 cut(s)	403, 438
SetI	ASST	5 cut(s)	179, 289, 344, 461, 573
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	7 cut(s)	34, 208, 230, 292, 417, 449, 511
SsiI	CCGC	2 cut(s)	410, 504
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	401, 436
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	4 cut(s)	60, 303, 496, 547
TasI	AATT	7 cut(s)	34, 208, 230, 292, 417, 449, 511
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	1 cut(s)	507
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	3 cut(s)	120, 387, 581
TspRI	CASTG	1 cut(s)	30
XapI	RAATTY	2 cut(s)	208, 292
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.