Rmu_sc0005838.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005838.1
OG0004758
Physical Location & Seq
Reverse (-)
24412 .. 25110
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005838.1_g000009.1.cds

Sequence Viewer

Length: 372 bp
atgtctccagaatacatctacgatcgatatgccgaaaccacaagtcgattggatagtcagatcctcacgaatcgaaacatcgaacgcatctacgtcctccgagctccaaaatccctcaagaatcaccggcaaaggtggctggaatctccagttccgatgatggcgatttcgtccccgatgtggcttcttcttggccttgcaacgcccaccacagctcgtcccacgctcgatggttaccacagacgtgtagaggaggttgaggtgaagaaagcccacttggaatctcgtttgatggtggccggaggaagaagaacaaagccggcgaaaatagaggctctattgggggttaatagacgttttgaattgatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.29

Weight (kDa)

10.2

Isoelectric Point (pI)

83.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 180
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 1 cut(s) 362
AjiI CACGTC 1 cut(s) 245
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AleI CACNNNNGTG 1 cut(s) 243
AluBI AGCT 2 cut(s) 104, 215
AluI AGCT 2 cut(s) 104, 215
Alw21I GWGCWC 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 55
AoxI GGCC 2 cut(s) 193, 297
AsuHPI GGTGA 2 cut(s) 116, 274
BanII GRGCYC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 106
BccI CCATC 3 cut(s) 154, 224, 286
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BcoDI GTCTC 1 cut(s) 9
BmgBI CACGTC 1 cut(s) 245
BmsI GCATC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 101
Bsa29I ATCGAT 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse118I RCCGGY 2 cut(s) 126, 319
Bse1I ACTGG 1 cut(s) 149
BseCI ATCGAT 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 266
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 2 cut(s) 195, 299
BshVI ATCGAT 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 106
BsiSI CCGG 3 cut(s) 127, 300, 320
BslFI GGGAC 2 cut(s) 157, 204
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 2 cut(s) 157, 204
BsnI GGCC 2 cut(s) 195, 299
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 22, 60
BspANI GGCC 2 cut(s) 195, 299
BspDI ATCGAT 1 cut(s) 25
BspPI GGATC 1 cut(s) 55
BsrFI RCCGGY 2 cut(s) 126, 319
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 2 cut(s) 126, 319
BssMI GATC 2 cut(s) 22, 60
BstC8I GCNNGC 1 cut(s) 321
BstEII GGTNACC 1 cut(s) 233
BstKTI GATC 2 cut(s) 25, 63
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 22, 60
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstPI GGTNACC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
Bsu15I ATCGAT 1 cut(s) 25
BsuRI GGCC 2 cut(s) 195, 299
BsuTUI ATCGAT 1 cut(s) 25
BtrI CACGTC 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 321
Cfr10I RCCGGY 2 cut(s) 126, 319
ClaI ATCGAT 1 cut(s) 25
CviJI RGCY 9 cut(s) 104, 139, 184, 195, 215, 272, 299, 319, 335
CviKI_1 RGCY 9 cut(s) 104, 139, 184, 195, 215, 272, 299, 319, 335
DpnI GATC 2 cut(s) 24, 62
DpnII GATC 2 cut(s) 22, 60
EaeI YGGCCR 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 104
Eco91I GGTNACC 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 104
EcoO65I GGTNACC 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 106
FaiI YATR 1 cut(s) 30
FaqI GGGAC 2 cut(s) 157, 204
FriOI GRGCYC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 2 cut(s) 195, 299
HapII CCGG 3 cut(s) 127, 300, 320
HinfI GANTC 4 cut(s) 70, 121, 143, 281
HpaII CCGG 3 cut(s) 127, 300, 320
HphI GGTGA 2 cut(s) 116, 274
Hpy188I TCNGA 3 cut(s) 60, 101, 156
Hpy188III TCNNGA 3 cut(s) 8, 67, 118
HpyCH4IV ACGT 3 cut(s) 93, 244, 355
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpySE526I ACGT 3 cut(s) 93, 244, 355
KroI GCCGGC 1 cut(s) 319
KroNI GCCGGC 1 cut(s) 321
Kzo9I GATC 2 cut(s) 22, 60
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 6 cut(s) 21, 125, 140, 162, 313, 333
LweI GCATC 1 cut(s) 96
MaeII ACGT 3 cut(s) 93, 244, 355
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 24, 62
MboI GATC 2 cut(s) 22, 60
MboII GAAGA 4 cut(s) 179, 277, 318, 321
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 1 cut(s) 362
MnlI CCTC 8 cut(s) 74, 107, 125, 244, 247, 253, 296, 325
MroNI GCCGGC 1 cut(s) 319
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 243
MspI CCGG 3 cut(s) 127, 300, 320
MwoI GCNNNNNNNGC 1 cut(s) 136
NaeI GCCGGC 1 cut(s) 321
NdeII GATC 2 cut(s) 22, 60
NgoMIV GCCGGC 1 cut(s) 319
OliI CACNNNNGTG 1 cut(s) 243
PdiI GCCGGC 1 cut(s) 321
PfeI GAWTC 4 cut(s) 70, 121, 143, 281
Ple19I CGATCG 1 cut(s) 25
Psp124BI GAGCTC 1 cut(s) 106
PspEI GGTNACC 1 cut(s) 233
PsuI RGATCY 1 cut(s) 60
PvuI CGATCG 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 243
SacI GAGCTC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 348
Sau3AI GATC 2 cut(s) 22, 60
SduI GDGCHC 1 cut(s) 106
SetI ASST 8 cut(s) 96, 106, 137, 217, 247, 258, 264, 358
SfaNI GCATC 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 362
SstI GAGCTC 1 cut(s) 106
TaiI ACGT 3 cut(s) 96, 247, 358
TaqI TCGA 5 cut(s) 25, 46, 73, 81, 228
TasI AATT 1 cut(s) 362
TfiI GAWTC 4 cut(s) 70, 121, 143, 281
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.