Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001475

Physical Location & Seq

Genomic Coordinates Reverse (-)

16907334 .. 16909119

Gene Structure 1786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCAAACGCGGCATCGGGAATGGCTGTGCATGATGATTGCAAGCTGAAATTTATGGAACTGAAGGCGAAAAGAACATTCCGTACCATAGTCTACAAGATTGAGGATAAGCAAGTGATTGTAGAGAAACTCGGTGAACCTGAACAATCATATGATGACTTTGCAGCTAGTCTTCCAGCTGATGATTGCCGATATTGCATTTACGATTTCGACTTTGTCACTGCGGAGAACTGCCAGAAGAGCAAGATCTTCTTCATTGCATGGTCTCCGGACACTGCCAAAGTGAGAGACAAGATGATTTACGCGAGCTCTAAAGATAGGTTCAAGAGAGAACTAGATGGAATTCAAGTGGAACTTCAAGCTACTGATCCAACAGAAATGGGTCTTGATGTTTTCAAAAGCCGCACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007165 GO:0008150 GO:0008154 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0022411 GO:0023052 GO:0030029 GO:0030036 GO:0030042 GO:0030054 GO:0031347 GO:0031349 GO:0032984 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0046686 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051261 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071840 GO:0071944 GO:0080134 GO:0097435 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

137

Amino Acids

15.74

Weight (kDa)

5.24

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cofilin_ADF	PF00241	2 - 128	7.9e-39	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46000 AT3G46000 AT3G46000 AT3G46010 AT3G46010 AT5G59880 AT5G59890 AT5G59890 AT5G59890
fragaria_vesca	FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_7g21550
malus_domestica	MD01G1122300.v1.1 MD04G1122600.v1.1 MD07G1191800.v1.1 MD12G1138800.v1.1
prunus_persica	Prupe.2G229900_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1
pyrus_communis	pycom04g11090 pycom07g18120 pycom12g13310
rosa_chinensis	RchiOBHm_Chr1g0365871 RchiOBHm_Chr3g0467221
rosa_laevigata	RLG00000024518 RLG00000027384
rosa_multiflora	Rmu_co8241371.1_g000001 Rmu_sc0004288.1_g000018 Rmu_sc0004404.1_g000004 Rmu_sc0004404.1_g000011 Rmu_sc0006406.1_g000003
rosa_roxburghii	Rroxscaffold_6G00413810 Rroxscaffold_6G00420950
rosa_rugosa	Rorug01G0325000 Rorug03G0030100.1 Rorug03G0085800 Rorug03G0085900
rosa_samantha	Rh1AG334200 Rh1BG294800 Rh1CG311500 Rh1DG327200 Rh3AG134300 Rh3BG155600 Rh3CG091500 Rh3CG155200 Rh3DG156400
rosa_wichuraiana	Rw1G029650 Rw3G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	2 cut(s)	11, 305
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	3 cut(s)	11, 224, 403
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	2 cut(s)	50, 342
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	85
AgsI	TTSAA	4 cut(s)	325, 347, 359, 397
AluBI	AGCT	5 cut(s)	46, 167, 179, 309, 362
AluI	AGCT	5 cut(s)	46, 167, 179, 309, 362
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	2 cut(s)	270, 282
AlwI	GGATC	1 cut(s)	362
Aor13HI	TCCGGA	1 cut(s)	268
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	2 cut(s)	50, 342
AsuHPI	GGTGA	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	1 cut(s)	332
BcoDI	GTCTC	2 cut(s)	270, 282
BfaI	CTAG	2 cut(s)	168, 335
BglII	AGATCT	1 cut(s)	246
BisI	GCNGC	3 cut(s)	12, 165, 403
BlsI	GCNGC	3 cut(s)	13, 166, 404
BmsI	GCATC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	255
BseAI	TCCGGA	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	176
Bsh1236I	CGCG	2 cut(s)	11, 305
BsiHKAI	GWGCWC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	269
BsmAI	GTCTC	2 cut(s)	270, 282
Bso31I	GGTCTC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	2 cut(s)	246, 367
BspACI	CCGC	3 cut(s)	11, 224, 403
BspEI	TCCGGA	1 cut(s)	268
BspFNI	CGCG	2 cut(s)	11, 305
BspPI	GGATC	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	255
BssMI	GATC	2 cut(s)	246, 367
Bst6I	CTCTTC	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	44, 307
BstFNI	CGCG	2 cut(s)	11, 305
BstKTI	GATC	2 cut(s)	249, 370
BstMAI	GTCTC	2 cut(s)	270, 282
BstMBI	GATC	2 cut(s)	246, 367
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 195, 240
BstUI	CGCG	2 cut(s)	11, 305
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BtsI	GCAGTG	2 cut(s)	219, 273
BtsIMutI	CAGTG	2 cut(s)	219, 273
Cac8I	GCNNGC	2 cut(s)	44, 307
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	2 cut(s)	32, 261
CviJI	RGCY	7 cut(s)	26, 46, 167, 179, 309, 362, 402
CviKI_1	RGCY	7 cut(s)	26, 46, 167, 179, 309, 362, 402
CviQI	GTAC	1 cut(s)	84
DpnI	GATC	2 cut(s)	248, 369
DpnII	GATC	2 cut(s)	246, 367
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Ecl136II	GAGCTC	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	311
Eco31I	GGTCTC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	309
EcoRI	GAATTC	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	311
FaeI	CATG	2 cut(s)	35, 264
FaiI	YATR	6 cut(s)	33, 56, 89, 151, 153, 262
FalI	AAGNNNNNCTT	4 cut(s)	236, 268, 339, 371
FatI	CATG	2 cut(s)	31, 260
FauNDI	CATATG	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	12, 165, 403
FriOI	GRGCYC	1 cut(s)	311
Fsp4HI	GCNGC	3 cut(s)	12, 165, 403
FspBI	CTAG	2 cut(s)	168, 335
GluI	GCNGC	3 cut(s)	12, 165, 403
HapII	CCGG	1 cut(s)	269
Hin1II	CATG	2 cut(s)	35, 264
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	94, 137
Hpy188III	TCNNGA	4 cut(s)	18, 269, 325, 386
Hpy8I	GTNNAC	2 cut(s)	94, 137
HpyAV	CCTTC	1 cut(s)	58
HpyCH4V	TGCA	5 cut(s)	31, 42, 164, 198, 260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 195, 240
Hsp92II	CATG	2 cut(s)	35, 264
Kpn2I	TCCGGA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	246, 367
LguI	GCTCTTC	1 cut(s)	233
LpnPI	CCDG	4 cut(s)	153, 189, 248, 282
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	2 cut(s)	168, 335
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	248, 369
MboI	GATC	2 cut(s)	246, 367
MboII	GAAGA	4 cut(s)	164, 241, 244, 250
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	1 cut(s)	311
MluCI	AATT	2 cut(s)	50, 342
MmeI	TCCRAC	1 cut(s)	395
MnlI	CCTC	1 cut(s)	97
MroI	TCCGGA	1 cut(s)	268
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	1 cut(s)	269
MvnI	CGCG	2 cut(s)	11, 305
MwoI	GCNNNNNNNGC	3 cut(s)	11, 195, 240
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	2 cut(s)	246, 367
NlaIII	CATG	2 cut(s)	35, 264
NmuCI	GTSAC	1 cut(s)	217
PciSI	GCTCTTC	1 cut(s)	233
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	13, 166, 404
Psp124BI	GAGCTC	1 cut(s)	311
PsrI	GAACNNNNNNTAC	2 cut(s)	67, 99
PsuI	RGATCY	1 cut(s)	246
PsyI	GACNNNGTC	1 cut(s)	215
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SacI	GAGCTC	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	233
SatI	GCNGC	3 cut(s)	12, 165, 403
Sau3AI	GATC	2 cut(s)	246, 367
SduI	GDGCHC	1 cut(s)	311
SetI	ASST	7 cut(s)	48, 142, 169, 181, 311, 323, 364
SfaNI	GCATC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	50, 342
SsiI	CCGC	3 cut(s)	11, 224, 403
SspMI	CTAG	2 cut(s)	168, 335
SstI	GAGCTC	1 cut(s)	311
TaqI	TCGA	1 cut(s)	210
TasI	AATT	2 cut(s)	50, 342
TauI	GCSGC	2 cut(s)	14, 405
TscAI	CASTG	2 cut(s)	226, 280
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	244
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	2 cut(s)	226, 280
Tth111I	GACNNNGTC	1 cut(s)	215
XapI	RAATTY	2 cut(s)	50, 342
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	2 cut(s)	168, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.