Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001475

Physical Location & Seq

Genomic Coordinates Reverse (-)

13002559 .. 13005893

Gene Structure 3335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG155200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCTGTGCACGATGAGTGCAAATTGAAATTTCTAGAGCTCAAGACAAAGAGGACCTACCGATCAATAGTGTACAAGATCGAGGAGAAGCAAAAGCAAGTTATTGTGGAAGCAACTGGGGATCCAACACAAACCTATGAGAATTTCACAGATAGCCTTCCTTCTGATGAATGCCGTTATGCTGTTTTTGATTTCGATTTTCTTACGCCAGAGGGTGTCCCAAAAAGCAGGATATTCTTCATTGCCTGGTCTCCTGATACATCAAGGGTGAGAAACAAGATGATCTATGCAAGCTCAAAGGACAGATTCAAGAGAGAGCTTGATGGAATTCAGATCGAGTTGCAGGCAACTGATCCATCTGAGATTGGCCTTGATGTCATTAAGAGCCGTGCCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

132

Amino Acids

15.31

Weight (kDa)

5.9

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cofilin_ADF	PF00241	2 - 131	1.8e-38	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46000 AT3G46000 AT3G46000 AT3G46010 AT3G46010 AT5G59880 AT5G59890 AT5G59890 AT5G59890
fragaria_vesca	FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_7g21550
malus_domestica	MD01G1122300.v1.1 MD04G1122600.v1.1 MD07G1191800.v1.1 MD12G1138800.v1.1
prunus_persica	Prupe.2G229900_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1
pyrus_communis	pycom04g11090 pycom07g18120 pycom12g13310
rosa_chinensis	RchiOBHm_Chr1g0365871 RchiOBHm_Chr3g0467221
rosa_laevigata	RLG00000024518 RLG00000027384
rosa_multiflora	Rmu_co8241371.1_g000001 Rmu_sc0004288.1_g000018 Rmu_sc0004404.1_g000004 Rmu_sc0004404.1_g000011 Rmu_sc0006406.1_g000003
rosa_roxburghii	Rroxscaffold_6G00413810 Rroxscaffold_6G00420950
rosa_rugosa	Rorug01G0325000 Rorug03G0030100.1 Rorug03G0085800 Rorug03G0085900
rosa_samantha	Rh1AG334200 Rh1BG294800 Rh1CG311500 Rh1DG327200 Rh3AG134300 Rh3BG155600 Rh3CG091500 Rh3CG155200 Rh3DG156400
rosa_wichuraiana	Rw1G029650 Rw3G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	116, 129, 347
AcsI	RAATTY	3 cut(s)	29, 142, 327
AfaI	GTAC	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	28, 310
AjnI	CCWGG	1 cut(s)	245
AluBI	AGCT	4 cut(s)	40, 294, 319, 396
AluI	AGCT	4 cut(s)	40, 294, 319, 396
Alw21I	GWGCWC	2 cut(s)	12, 42
Alw26I	GTCTC	1 cut(s)	255
Alw44I	GTGCAC	1 cut(s)	8
AlwI	GGATC	3 cut(s)	116, 129, 347
AoxI	GGCC	1 cut(s)	367
ApaLI	GTGCAC	1 cut(s)	8
ApoI	RAATTY	3 cut(s)	29, 142, 327
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	12
BamHI	GGATCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	2 cut(s)	12, 42
BccI	CCATC	2 cut(s)	317, 364
BceAI	ACGGC	2 cut(s)	159, 372
BciT130I	CCWGG	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	247
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	247
BmrI	ACTGGG	1 cut(s)	126
BmuI	ACTGGG	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	247
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	12
BshFI	GGCC	1 cut(s)	369
BsiHKAI	GWGCWC	2 cut(s)	12, 42
BslFI	GGGAC	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	369
Bso31I	GGTCTC	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	12, 42
Bsp1407I	TGTACA	1 cut(s)	72
Bsp143I	GATC	6 cut(s)	62, 78, 121, 282, 333, 352
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	123
BspPI	GGATC	3 cut(s)	116, 129, 347
BspTNI	GGTCTC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	240
BsrGI	TGTACA	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	6 cut(s)	62, 78, 121, 282, 333, 352
Bst2UI	CCWGG	1 cut(s)	247
BstAUI	TGTACA	1 cut(s)	72
BstC8I	GCNNGC	3 cut(s)	292, 345, 394
BstDEI	CTNAG	1 cut(s)	360
BstKTI	GATC	6 cut(s)	65, 81, 124, 285, 336, 355
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	6 cut(s)	62, 78, 121, 282, 333, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	393
BstNI	CCWGG	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	245
BstSLI	GKGCMC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	369
Cac8I	GCNNGC	3 cut(s)	292, 345, 394
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	73
CviJI	RGCY	8 cut(s)	5, 40, 156, 294, 319, 369, 387, 396
CviKI_1	RGCY	8 cut(s)	5, 40, 156, 294, 319, 369, 387, 396
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	6 cut(s)	64, 80, 123, 284, 335, 354
DpnII	GATC	6 cut(s)	62, 78, 121, 282, 333, 352
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	54
EcoRI	GAATTC	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	42
FaiI	YATR	3 cut(s)	138, 180, 288
FaqI	GGGAC	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	369
HinfI	GANTC	1 cut(s)	306
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	10, 73
Hpy188I	TCNGA	3 cut(s)	166, 333, 361
Hpy188III	TCNNGA	4 cut(s)	35, 43, 254, 310
Hpy8I	GTNNAC	2 cut(s)	10, 73
HpyAV	CCTTC	2 cut(s)	167, 171
HpyCH4V	TGCA	4 cut(s)	10, 21, 290, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	393
HpyF3I	CTNAG	1 cut(s)	360
Kzo9I	GATC	6 cut(s)	62, 78, 121, 282, 333, 352
LpnPI	CCDG	7 cut(s)	102, 214, 222, 232, 259, 267, 329
MaeI	CTAG	1 cut(s)	35
MalI	GATC	6 cut(s)	64, 80, 123, 284, 335, 354
MboI	GATC	6 cut(s)	62, 78, 121, 282, 333, 352
MboII	GAAGA	1 cut(s)	229
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	2 cut(s)	12, 42
MluCI	AATT	4 cut(s)	23, 29, 142, 327
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	3 cut(s)	45, 76, 205
MseI	TTAA	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	247
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	393
NdeII	GATC	6 cut(s)	62, 78, 121, 282, 333, 352
NlaIV	GGNNCC	1 cut(s)	123
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	306
PpuMI	RGGWCCY	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	54
PspPPI	RGGWCCY	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	381
Sau3AI	GATC	6 cut(s)	62, 78, 121, 282, 333, 352
Sau96I	GGNCC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	247
SduI	GDGCHC	2 cut(s)	12, 42
SetI	ASST	6 cut(s)	42, 59, 137, 296, 321, 398
SinI	GGWCC	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	4 cut(s)	23, 29, 142, 327
SspMI	CTAG	1 cut(s)	35
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	245
TaqI	TCGA	3 cut(s)	81, 195, 336
TasI	AATT	4 cut(s)	23, 29, 142, 327
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TspDTI	ATGAA	2 cut(s)	183, 229
VneI	GTGCAC	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	54
XapI	RAATTY	3 cut(s)	29, 142, 327
XbaI	TCTAGA	1 cut(s)	34
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.