Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001475

Physical Location & Seq

Genomic Coordinates Reverse (-)

16909217 .. 16910845

Gene Structure 1629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCGAACGCGGCATCTGGAATGGCTGTGCATGATGATTGCAAGCTGAGATTTCTGGAACTGAAGGCTAAAAGGACACACCGTTTCATAGTTTACAAGATTGAGGAGAAGCAGAAGCAAGTTGTTGTTGAGAAAGTTGGTCAACCGATCCAAACTTACGAGGAGTTTGCAGCATGTCTTCCAGCTGATGAATGCCGTTACGCCATTTACGATTTTGACTTTGTAACTGCTGAGAATTGCCAGAAGAGCAAGATCTTCTTCATCGCGTGGTGTCCGGATATTGCTAAGGTGAGAAGCAAGATGATCTACGCGAGCTCCAAGGACAGGTTCAAGAGGGAACTAGATGGGATTCAAGTAGAGCTACAGGCAACTGATCCAACAGAGATGGATCTCGATGTTTTCAGGAGCCGTGCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007165 GO:0008150 GO:0008154 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0022411 GO:0023052 GO:0030029 GO:0030036 GO:0030042 GO:0030054 GO:0031347 GO:0031349 GO:0032984 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0046686 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051261 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071840 GO:0071944 GO:0080134 GO:0097435 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

139

Amino Acids

16.11

Weight (kDa)

6.73

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cofilin_ADF	PF00241	7 - 138	3.8e-42	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46000 AT3G46000 AT3G46000 AT3G46010 AT3G46010 AT5G59880 AT5G59890 AT5G59890 AT5G59890
fragaria_vesca	FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_7g21550
malus_domestica	MD01G1122300.v1.1 MD04G1122600.v1.1 MD07G1191800.v1.1 MD12G1138800.v1.1
prunus_persica	Prupe.2G229900_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1
pyrus_communis	pycom04g11090 pycom07g18120 pycom12g13310
rosa_chinensis	RchiOBHm_Chr1g0365871 RchiOBHm_Chr3g0467221
rosa_laevigata	RLG00000024518 RLG00000027384
rosa_multiflora	Rmu_co8241371.1_g000001 Rmu_sc0004288.1_g000018 Rmu_sc0004404.1_g000004 Rmu_sc0004404.1_g000011 Rmu_sc0006406.1_g000003
rosa_roxburghii	Rroxscaffold_6G00413810 Rroxscaffold_6G00420950
rosa_rugosa	Rorug01G0325000 Rorug03G0030100.1 Rorug03G0085800 Rorug03G0085900
rosa_samantha	Rh1AG334200 Rh1BG294800 Rh1CG311500 Rh1DG327200 Rh3AG134300 Rh3BG155600 Rh3CG091500 Rh3CG155200 Rh3DG156400
rosa_wichuraiana	Rw1G029650 Rw3G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	11, 266, 311
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	3 cut(s)	142, 368, 396
AcuI	CTGAAG	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	331, 353
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	4 cut(s)	46, 185, 315, 361
AluI	AGCT	4 cut(s)	46, 185, 315, 361
Alw21I	GWGCWC	1 cut(s)	317
AlwI	GGATC	3 cut(s)	142, 368, 396
Aor13HI	TCCGGA	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	2 cut(s)	338, 379
BceAI	ACGGC	2 cut(s)	180, 393
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	362
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	2 cut(s)	12, 171
BlsI	GCNGC	2 cut(s)	13, 172
BmiI	GGNNCC	1 cut(s)	407
BmsI	GCATC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	170
Bpu10I	CCTNAGC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
BseAI	TCCGGA	1 cut(s)	274
BseDI	CCNNGG	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMII	CTCAG	2 cut(s)	38, 222
BseRI	GAGGAG	2 cut(s)	119, 176
BseXI	GCAGC	1 cut(s)	182
Bsh1236I	CGCG	3 cut(s)	11, 266, 311
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	5 cut(s)	147, 252, 303, 373, 388
BspACI	CCGC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	39, 223
BspEI	TCCGGA	1 cut(s)	274
BspFNI	CGCG	3 cut(s)	11, 266, 311
BspLI	GGNNCC	1 cut(s)	407
BspPI	GGATC	3 cut(s)	142, 368, 396
BspQI	GCTCTTC	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	5 cut(s)	147, 252, 303, 373, 388
BssT1I	CCWWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	44, 313
BstDEI	CTNAG	3 cut(s)	47, 231, 285
BstFNI	CGCG	3 cut(s)	11, 266, 311
BstKTI	GATC	5 cut(s)	150, 255, 306, 376, 391
BstMBI	GATC	5 cut(s)	147, 252, 303, 373, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 246
BstNSI	RCATGY	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	362
BstUI	CGCG	3 cut(s)	11, 266, 311
BstV1I	GCAGC	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	170
BstX2I	RGATCY	2 cut(s)	252, 388
BstYI	RGATCY	2 cut(s)	252, 388
BtgZI	GCGATG	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	44, 313
CviAII	CATG	2 cut(s)	32, 174
CviJI	RGCY	7 cut(s)	26, 46, 68, 185, 315, 361, 408
CviKI_1	RGCY	7 cut(s)	26, 46, 68, 185, 315, 361, 408
DdeI	CTNAG	3 cut(s)	47, 231, 285
DpnI	GATC	5 cut(s)	149, 254, 305, 375, 390
DpnII	GATC	5 cut(s)	147, 252, 303, 373, 388
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Ecl136II	GAGCTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	2 cut(s)	35, 177
FaiI	YATR	3 cut(s)	33, 89, 175
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	2 cut(s)	31, 173
Fnu4HI	GCNGC	2 cut(s)	12, 171
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	2 cut(s)	12, 171
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	2 cut(s)	12, 171
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	2 cut(s)	35, 177
HincII	GTYRAC	1 cut(s)	143
HindII	GTYRAC	1 cut(s)	143
HinfI	GANTC	1 cut(s)	349
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	2 cut(s)	94, 143
Hpy188III	TCNNGA	6 cut(s)	18, 56, 275, 331, 392, 403
Hpy8I	GTNNAC	2 cut(s)	94, 143
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	3 cut(s)	31, 42, 170
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 246
HpyF3I	CTNAG	3 cut(s)	47, 231, 285
Hsp92II	CATG	2 cut(s)	35, 177
Kpn2I	TCCGGA	1 cut(s)	274
Kzo9I	GATC	5 cut(s)	147, 252, 303, 373, 388
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	2 cut(s)	320, 405
LpnPI	CCDG	8 cut(s)	3, 41, 195, 254, 288, 310, 350, 388
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	341
MaeIII	GTNAC	2 cut(s)	197, 223
MalI	GATC	5 cut(s)	149, 254, 305, 375, 390
MboI	GATC	5 cut(s)	147, 252, 303, 373, 388
MboII	GAAGA	4 cut(s)	170, 247, 250, 256
MflI	RGATCY	2 cut(s)	252, 388
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	3 cut(s)	97, 154, 327
MroI	TCCGGA	1 cut(s)	274
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	1 cut(s)	275
Mva1269I	GAATGC	1 cut(s)	197
MvnI	CGCG	3 cut(s)	11, 266, 311
MwoI	GCNNNNNNNGC	2 cut(s)	11, 246
NdeII	GATC	5 cut(s)	147, 252, 303, 373, 388
NlaIII	CATG	2 cut(s)	35, 177
NlaIV	GGNNCC	1 cut(s)	407
NspI	RCATGY	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	13, 172
Psp124BI	GAGCTC	1 cut(s)	317
PspN4I	GGNNCC	1 cut(s)	407
PsuI	RGATCY	2 cut(s)	252, 388
PvuII	CAGCTG	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	317
SapI	GCTCTTC	1 cut(s)	239
SatI	GCNGC	2 cut(s)	12, 171
Sau3AI	GATC	5 cut(s)	147, 252, 303, 373, 388
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	6 cut(s)	48, 187, 291, 317, 329, 363
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	362
Sse9I	AATT	1 cut(s)	235
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	341
SstI	GAGCTC	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	83
TaqI	TCGA	1 cut(s)	393
TasI	AATT	1 cut(s)	235
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	3 cut(s)	76, 204, 250
XceI	RCATGY	1 cut(s)	177
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.