FvH4_6g14260

Belongs to the actin-binding proteins ADF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001475
Physical Location & Seq
Reverse (-)
8744256 .. 8746303
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14260.t3

Sequence Viewer

Length: 399 bp
ATGGCTGTGCACGATGATTGCAAATTGAAGTTTCTGGAACTCAAGACAAAGAGGACCTACCGATCGATTGTGTTCAAGATTGAGGAGAAGCAAAAGCAAGTTATTGTTGAAGCAACTGGTGATCCTGCACAAACCTATGAGGCTTTCACAGATAGCCTTCCTACTGATGAATGCCGTTATGCGGTTTTTGATTTCGATTTCCTTACACCAGAGGGTGTCCCTAAAAGTCGGATATTCTTCATTGCATGGTCTCCTGATACATCAAGGGTGAGAAACAAGATGATCTACGCAAGCTCAAAGGACAGATTCAAGAGAGAGCTTGATGGAATTCAGATTGAGTTGCAGGCAACTGATTCATCTGAGATTGGCCTTGATGTCATTAAGAGCCGTGCCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
Cofilin_ADF

Protein Analysis

133

Amino Acids

15.21

Weight (kDa)

5.89

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 7 - 138 8.4e-38 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 182
AclWI GGATC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 4 cut(s) 28, 76, 110, 310
AluBI AGCT 3 cut(s) 294, 319, 396
AluI AGCT 3 cut(s) 294, 319, 396
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 255
Alw44I GTGCAC 1 cut(s) 8
AlwI GGATC 1 cut(s) 116
AoxI GGCC 1 cut(s) 367
ApaLI GTGCAC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 2 cut(s) 131, 280
AvaII GGWCC 1 cut(s) 54
BaeGI GKGCMC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 12
BccI CCATC 1 cut(s) 317
BceAI ACGGC 2 cut(s) 159, 372
BcoDI GTCTC 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 240
BseCI ATCGAT 1 cut(s) 65
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 111
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 369
BshVI ATCGAT 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 12
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 1 cut(s) 369
Bso31I GGTCTC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 3 cut(s) 62, 121, 282
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 369
BspCNI CTCAG 1 cut(s) 352
BspDI ATCGAT 1 cut(s) 65
BspPI GGATC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 1 cut(s) 121
BssMI GATC 3 cut(s) 62, 121, 282
BstC8I GCNNGC 3 cut(s) 292, 345, 394
BstDEI CTNAG 1 cut(s) 360
BstKTI GATC 3 cut(s) 65, 124, 285
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 3 cut(s) 62, 121, 282
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 1 cut(s) 393
BstSLI GKGCMC 1 cut(s) 12
Bsu15I ATCGAT 1 cut(s) 65
BsuRI GGCC 1 cut(s) 369
BsuTUI ATCGAT 1 cut(s) 65
Cac8I GCNNGC 3 cut(s) 292, 345, 394
Cfr13I GGNCC 1 cut(s) 54
ClaI ATCGAT 1 cut(s) 65
CviAII CATG 1 cut(s) 246
CviJI RGCY 8 cut(s) 5, 143, 156, 294, 319, 369, 387, 396
CviKI_1 RGCY 8 cut(s) 5, 143, 156, 294, 319, 369, 387, 396
DdeI CTNAG 1 cut(s) 360
DpnI GATC 3 cut(s) 64, 123, 284
DpnII GATC 3 cut(s) 62, 121, 282
Eco31I GGTCTC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 54
EcoO109I RGGNCCY 1 cut(s) 54
EcoRI GAATTC 1 cut(s) 327
FaeI CATG 1 cut(s) 249
FaiI YATR 3 cut(s) 138, 180, 247
FaqI GGGAC 1 cut(s) 203
FatI CATG 1 cut(s) 245
HaeIII GGCC 1 cut(s) 369
Hin1II CATG 1 cut(s) 249
HinfI GANTC 2 cut(s) 306, 353
HphI GGTGA 2 cut(s) 131, 280
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 3 cut(s) 231, 333, 361
Hpy188III TCNNGA 5 cut(s) 35, 43, 76, 254, 310
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 167
HpyCH4V TGCA 5 cut(s) 10, 21, 128, 245, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 393
HpyF3I CTNAG 1 cut(s) 360
Hsp92II CATG 1 cut(s) 249
Kzo9I GATC 3 cut(s) 62, 121, 282
LpnPI CCDG 6 cut(s) 20, 102, 138, 222, 267, 329
MalI GATC 3 cut(s) 64, 123, 284
MboI GATC 3 cut(s) 62, 121, 282
MboII GAAGA 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 2 cut(s) 23, 327
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 4 cut(s) 45, 76, 133, 205
MseI TTAA 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 393
NdeII GATC 3 cut(s) 62, 121, 282
NlaIII CATG 1 cut(s) 249
PctI GAATGC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 306, 353
Ple19I CGATCG 1 cut(s) 65
PpuMI RGGWCCY 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 54
PspPI GGNCC 1 cut(s) 54
PspPPI RGGWCCY 1 cut(s) 54
PvuI CGATCG 1 cut(s) 65
SaqAI TTAA 1 cut(s) 381
Sau3AI GATC 3 cut(s) 62, 121, 282
Sau96I GGNCC 1 cut(s) 54
SduI GDGCHC 1 cut(s) 12
SetI ASST 5 cut(s) 59, 137, 296, 321, 398
SinI GGWCC 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 2 cut(s) 23, 327
SsiI CCGC 1 cut(s) 182
TaqI TCGA 2 cut(s) 65, 195
TasI AATT 2 cut(s) 23, 327
TfiI GAWTC 2 cut(s) 306, 353
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TspDTI ATGAA 3 cut(s) 183, 229, 345
VneI GTGCAC 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.