Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001475

Physical Location & Seq

Genomic Coordinates Forward (+)

24122348 .. 24123912

Gene Structure 1565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCTAATGCTGCGTCAGGAATGGCAGTCCATGATGACTGCAAGCTAAGATTTCTGGAACTGAAGGCGAAAAGGACACACCGTTTCATTGTCTACAAGATTGAGGAGAAGCAGAAGCAAGTGATTGTTGAGAAAGTTGGTGAACCTATTCTAACTTACGAGGACTTTGCAGCAAGTCTTCCAGCTGACGAATGCCGATACGCCATTTATGATTTCGACTTTGTCACTGCAGAGAATTGCCAGAAGAGCAAGATTTTCTTCATTGCATGGTGTCCCGACGTAGCAAAGGTGAGAAGCAAGATGATCTATGCGAGCTCTAAGGACAGGTTCAAGCGTGAACTTGATGGAATTCAAGTGGAGCTTCAAGCAACTGATCCAACTGAGATGGATCTTGATGTTTTGAAAAGCCGCGTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007165 GO:0008150 GO:0008154 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0022411 GO:0023052 GO:0030029 GO:0030036 GO:0030042 GO:0030054 GO:0031347 GO:0031349 GO:0032984 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0046686 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051261 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071840 GO:0071944 GO:0080134 GO:0097435 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

139

Amino Acids

16.03

Weight (kDa)

6.14

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cofilin_ADF	PF00241	2 - 131	1.1e-41	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46000 AT3G46000 AT3G46000 AT3G46010 AT3G46010 AT5G59880 AT5G59890 AT5G59890 AT5G59890
fragaria_vesca	FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_7g21550
malus_domestica	MD01G1122300.v1.1 MD04G1122600.v1.1 MD07G1191800.v1.1 MD12G1138800.v1.1
prunus_persica	Prupe.2G229900_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1
pyrus_communis	pycom04g11090 pycom07g18120 pycom12g13310
rosa_chinensis	RchiOBHm_Chr1g0365871 RchiOBHm_Chr3g0467221
rosa_laevigata	RLG00000024518 RLG00000027384
rosa_multiflora	Rmu_co8241371.1_g000001 Rmu_sc0004288.1_g000018 Rmu_sc0004404.1_g000004 Rmu_sc0004404.1_g000011 Rmu_sc0006406.1_g000003
rosa_roxburghii	Rroxscaffold_6G00413810 Rroxscaffold_6G00420950
rosa_rugosa	Rorug01G0325000 Rorug03G0030100.1 Rorug03G0085800 Rorug03G0085900
rosa_samantha	Rh1AG334200 Rh1BG294800 Rh1CG311500 Rh1DG327200 Rh3AG134300 Rh3BG155600 Rh3CG091500 Rh3CG155200 Rh3DG156400
rosa_wichuraiana	Rw1G029650 Rw3G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	411
AciI	CCGC	1 cut(s)	409
AclWI	GGATC	2 cut(s)	368, 396
AcsI	RAATTY	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	331, 353, 365, 403
AluBI	AGCT	4 cut(s)	46, 185, 315, 361
AluI	AGCT	4 cut(s)	46, 185, 315, 361
Alw21I	GWGCWC	1 cut(s)	317
AlwI	GGATC	2 cut(s)	368, 396
ApeKI	GCWGC	2 cut(s)	11, 170
ApoI	RAATTY	1 cut(s)	348
Asp700I	GAANNNNTTC	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	152, 301
BanII	GRGCYC	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	2 cut(s)	338, 379
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BfmI	CTRYAG	1 cut(s)	228
BisI	GCNGC	3 cut(s)	12, 171, 409
BlsI	GCNGC	3 cut(s)	13, 172, 410
BpiI	GAAGAC	1 cut(s)	170
Bse3DI	GCAATG	1 cut(s)	261
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	303, 373, 388
BspACI	CCGC	1 cut(s)	409
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	411
BspMAI	CTGCAG	1 cut(s)	232
BspPI	GGATC	2 cut(s)	368, 396
BspQI	GCTCTTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	261
BssMI	GATC	3 cut(s)	303, 373, 388
Bst4CI	ACNGT	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	44, 313
BstDEI	CTNAG	3 cut(s)	47, 318, 381
BstFNI	CGCG	1 cut(s)	411
BstKTI	GATC	3 cut(s)	306, 376, 391
BstMBI	GATC	3 cut(s)	303, 373, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 246
BstSFI	CTRYAG	1 cut(s)	228
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	44, 313
CseI	GACGC	2 cut(s)	3, 400
CviAII	CATG	2 cut(s)	32, 267
CviJI	RGCY	6 cut(s)	5, 46, 185, 315, 361, 408
CviKI_1	RGCY	6 cut(s)	5, 46, 185, 315, 361, 408
DdeI	CTNAG	3 cut(s)	47, 318, 381
DpnI	GATC	3 cut(s)	305, 375, 390
DpnII	GATC	3 cut(s)	303, 373, 388
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Ecl136II	GAGCTC	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	317
FaeI	CATG	2 cut(s)	35, 270
FaiI	YATR	4 cut(s)	33, 210, 268, 309
FalI	AAGNNNNNCTT	4 cut(s)	242, 274, 345, 377
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	2 cut(s)	31, 266
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	12, 171, 409
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	3 cut(s)	12, 171, 409
GluI	GCNGC	3 cut(s)	12, 171, 409
HgaI	GACGC	2 cut(s)	3, 400
Hin1II	CATG	2 cut(s)	35, 270
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HphI	GGTGA	2 cut(s)	152, 301
Hpy166II	GTNNAC	4 cut(s)	94, 143, 338, 415
Hpy188III	TCNNGA	4 cut(s)	18, 56, 275, 392
Hpy8I	GTNNAC	4 cut(s)	94, 143, 338, 415
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	4 cut(s)	42, 170, 230, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 246
HpyF3I	CTNAG	3 cut(s)	47, 318, 381
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	35, 270
Kzo9I	GATC	3 cut(s)	303, 373, 388
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	5 cut(s)	3, 41, 195, 254, 310
Lsp1109I	GCAGC	1 cut(s)	182
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	305, 375, 390
MboI	GATC	3 cut(s)	303, 373, 388
MboII	GAAGA	3 cut(s)	170, 250, 256
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	2 cut(s)	235, 348
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	2 cut(s)	97, 154
MroXI	GAANNNNTTC	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	197
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	11, 246
NdeII	GATC	3 cut(s)	303, 373, 388
NlaIII	CATG	2 cut(s)	35, 270
NmuCI	GTSAC	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	239
PctI	GAATGC	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	147
PflFI	GACNNNGTC	1 cut(s)	221
PkrI	GCNGC	3 cut(s)	13, 172, 410
Psp124BI	GAGCTC	1 cut(s)	317
PstI	CTGCAG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	388
PsyI	GACNNNGTC	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	317
SapI	GCTCTTC	1 cut(s)	239
SatI	GCNGC	3 cut(s)	12, 171, 409
Sau3AI	GATC	3 cut(s)	303, 373, 388
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	8 cut(s)	48, 148, 187, 282, 291, 317, 329, 363
SfcI	CTRYAG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	235, 348
SsiI	CCGC	1 cut(s)	409
SstI	GAGCTC	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	83
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	216
TasI	AATT	2 cut(s)	235, 348
TauI	GCSGC	1 cut(s)	411
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	11, 170
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	76, 250
TspRI	CASTG	1 cut(s)	232
Tth111I	GACNNNGTC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	348
XmiI	GTMKAC	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.