Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001475

Physical Location & Seq

Genomic Coordinates Forward (+)

24580966 .. 24583107

Gene Structure 2142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G250700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCCAACGCAGCATCTGGTATGGCTGTGCATGATGATTGCAAATTGAAGTTTTTGGAGCTTAAGGCCAAGAGGACCTACCGCTCAATTGTTTTCAAGATTGAGGAGAAGCAAAAGCAAGTTGTGGTGGAATCTGTTGGTGAACCAACAGAGACCTATGAGCAGTTCGCAGGAAAACTTCCCGCTGATGAATGCCGTTATGCTGTTTTTGATTTTGATTTCCTTACACCAGAAGGTGTACAGAAGAGCCGCATATTCTTCATTGCATGGTCTCCTGATACATCGAGGGTGAGAAGCAAGATGATCTATGCAAGCTCGAAAGACAGATTTAAGAGAGAGCTTGATGGAATCCAGATTGAGTTGCAAGCGACTGATCCGACTGAGATTGGTCTTGATGTCATTAAAAGCCGTGCCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

140

Amino Acids

15.83

Weight (kDa)

6.61

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46000 AT3G46000 AT3G46000 AT3G46010 AT3G46010 AT5G59880 AT5G59890 AT5G59890 AT5G59890
fragaria_vesca	FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_7g21550
malus_domestica	MD01G1122300.v1.1 MD04G1122600.v1.1 MD07G1191800.v1.1 MD12G1138800.v1.1
prunus_persica	Prupe.2G229900_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1
pyrus_communis	pycom04g11090 pycom07g18120 pycom12g13310
rosa_chinensis	RchiOBHm_Chr1g0365871 RchiOBHm_Chr3g0467221
rosa_laevigata	RLG00000024518 RLG00000027384
rosa_multiflora	Rmu_co8241371.1_g000001 Rmu_sc0004288.1_g000018 Rmu_sc0004404.1_g000004 Rmu_sc0004404.1_g000011 Rmu_sc0006406.1_g000003
rosa_roxburghii	Rroxscaffold_6G00413810 Rroxscaffold_6G00420950
rosa_rugosa	Rorug01G0325000 Rorug03G0030100.1 Rorug03G0085800 Rorug03G0085900
rosa_samantha	Rh1AG334200 Rh1BG294800 Rh1CG311500 Rh1DG327200 Rh3AG134300 Rh3BG155600 Rh3CG091500 Rh3CG155200 Rh3DG156400
rosa_wichuraiana	Rw1G029650 Rw3G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	84
AciI	CCGC	3 cut(s)	82, 183, 250
AclWI	GGATC	1 cut(s)	368
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	240
AflII	CTTAAG	1 cut(s)	62
AgsI	TTSAA	2 cut(s)	49, 97
AluBI	AGCT	4 cut(s)	61, 315, 340, 417
AluI	AGCT	4 cut(s)	61, 315, 340, 417
Alw26I	GTCTC	2 cut(s)	146, 276
AlwI	GGATC	1 cut(s)	368
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	2 cut(s)	3, 66
ApeKI	GCWGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	152, 301
AvaII	GGWCC	1 cut(s)	75
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	2 cut(s)	180, 393
BcoDI	GTCTC	2 cut(s)	146, 276
BfaI	CTAG	1 cut(s)	418
BfrI	CTTAAG	1 cut(s)	62
BisI	GCNGC	2 cut(s)	12, 250
BlsI	GCNGC	2 cut(s)	13, 251
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmsI	GCATC	1 cut(s)	23
BsaI	GGTCTC	2 cut(s)	146, 276
Bse3DI	GCAATG	1 cut(s)	261
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	2 cut(s)	5, 68
BsmAI	GTCTC	2 cut(s)	146, 276
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	5, 68
Bso31I	GGTCTC	2 cut(s)	146, 276
Bsp1407I	TGTACA	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	303, 373
BspACI	CCGC	3 cut(s)	82, 183, 250
BspANI	GGCC	2 cut(s)	5, 68
BspCNI	CTCAG	1 cut(s)	373
BspPI	GGATC	1 cut(s)	368
BspQI	GCTCTTC	1 cut(s)	239
BspTI	CTTAAG	1 cut(s)	62
BspTNI	GGTCTC	2 cut(s)	146, 276
BsrBI	CCGCTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	238
BssMI	GATC	2 cut(s)	303, 373
Bst6I	CTCTTC	1 cut(s)	239
BstAFI	CTTAAG	1 cut(s)	62
BstAUI	TGTACA	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	313, 366, 415
BstDEI	CTNAG	1 cut(s)	381
BstKTI	GATC	2 cut(s)	306, 376
BstMAI	GTCTC	2 cut(s)	146, 276
BstMBI	GATC	2 cut(s)	303, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 414
BstV1I	GCAGC	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	5, 68
Cac8I	GCNNGC	3 cut(s)	313, 366, 415
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	2 cut(s)	32, 267
CviJI	RGCY	9 cut(s)	5, 26, 61, 68, 249, 315, 340, 408, 417
CviKI_1	RGCY	9 cut(s)	5, 26, 61, 68, 249, 315, 340, 408, 417
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	2 cut(s)	305, 375
DpnII	GATC	2 cut(s)	303, 373
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco31I	GGTCTC	2 cut(s)	146, 276
Eco47I	GGWCC	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	75
FaeI	CATG	2 cut(s)	35, 270
FaiI	YATR	7 cut(s)	23, 33, 159, 201, 254, 268, 309
FatI	CATG	2 cut(s)	31, 266
FauI	CCCGC	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	12, 250
Fsp4HI	GCNGC	2 cut(s)	12, 250
FspBI	CTAG	1 cut(s)	418
GluI	GCNGC	2 cut(s)	12, 250
HaeIII	GGCC	2 cut(s)	5, 68
Hin1II	CATG	2 cut(s)	35, 270
HinfI	GANTC	2 cut(s)	131, 348
HphI	GGTGA	2 cut(s)	152, 301
Hpy166II	GTNNAC	2 cut(s)	143, 239
Hpy188I	TCNGA	1 cut(s)	378
Hpy188III	TCNNGA	4 cut(s)	97, 275, 352, 392
Hpy8I	GTNNAC	2 cut(s)	143, 239
HpyAV	CCTTC	1 cut(s)	227
HpyCH4V	TGCA	5 cut(s)	31, 42, 266, 311, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 414
HpyF3I	CTNAG	1 cut(s)	381
Hsp92II	CATG	2 cut(s)	35, 270
Kzo9I	GATC	2 cut(s)	303, 373
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	5 cut(s)	3, 156, 243, 288, 365
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	418
MalI	GATC	2 cut(s)	305, 375
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	2 cut(s)	303, 373
MboII	GAAGA	2 cut(s)	250, 256
MfeI	CAATTG	1 cut(s)	87
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	44, 87
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	3 cut(s)	66, 97, 279
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	63, 330, 402
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	185
MspCI	CTTAAG	1 cut(s)	62
MunI	CAATTG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	11, 414
NdeII	GATC	2 cut(s)	303, 373
NlaIII	CATG	2 cut(s)	35, 270
PciSI	GCTCTTC	1 cut(s)	239
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	131, 348
PkrI	GCNGC	2 cut(s)	13, 251
PpuMI	RGGWCCY	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	75
PspPPI	RGGWCCY	1 cut(s)	75
PstNI	CAGNNNCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	3 cut(s)	63, 330, 402
SatI	GCNGC	2 cut(s)	12, 250
Sau3AI	GATC	2 cut(s)	303, 373
Sau96I	GGNCC	1 cut(s)	75
SetI	ASST	7 cut(s)	63, 80, 158, 238, 317, 342, 419
SfaNI	GCATC	1 cut(s)	23
SinI	GGWCC	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	44, 87
SsiI	CCGC	3 cut(s)	82, 183, 250
SspMI	CTAG	1 cut(s)	418
TaqI	TCGA	2 cut(s)	284, 317
TasI	AATT	2 cut(s)	44, 87
TatI	WGTACW	1 cut(s)	238
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	2 cut(s)	131, 348
Tru1I	TTAA	3 cut(s)	63, 330, 402
Tru9I	TTAA	3 cut(s)	63, 330, 402
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	2 cut(s)	204, 250
Vha464I	CTTAAG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	75
XspI	CTAG	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.