RLG00000027384

Belongs to the actin-binding proteins ADF family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
11125363 .. 11126809
1447 bp
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UTR
Exon/CDS
Intron
RLM00000027384

Sequence Viewer

Length: 420 bp
ATGGCAAATGCAGCCTCTGGGATGGCTGTGCATGATGACTGCAAGTTGAAGTTCTTAGACTTGAAGGCAAAACGAACTTACCGCTTCATAGTGTACAAGATTGAGGAGAAGCAAAAGCAGGTTGTAGTGGAAAAGCTTGGTGAACCAAGTCAGAGCTACGAGGATTTCTCTGCCTGCCTCCCTGCTGATGAATGCCGATACGCTGTCTATGACTTTGATTATGTGACAGAAGAGAACTGCCAGAAAAGCCGCATTATTTTCATTGCTTGGTCCCCTGACATATCAAGGGTGAGAAGCAAGATGATTTATGCCAGTTCAAAGGACAGGTTCAAGAGAGAGTTGGATGGCATTCAGGTTGAGTTGCAAGCTACTGACCCTACTGAGATGGGGCTTGATGTGATTAGAAGCCGCGCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

16.06

Weight (kDa)

5.91

Isoelectric Point (pI)

60.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 7 - 138 1.9e-40 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AccII CGCG 1 cut(s) 411
AciI CCGC 3 cut(s) 82, 250, 409
AfaI GTAC 1 cut(s) 95
AgsI TTSAA 4 cut(s) 49, 64, 318, 331
AluBI AGCT 3 cut(s) 136, 156, 368
AluI AGCT 3 cut(s) 136, 156, 368
AlwNI CAGNNNCTG 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 152, 301
AvaII GGWCC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 23
BccI CCATC 3 cut(s) 16, 338, 379
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 3 cut(s) 12, 250, 409
BlsI GCNGC 3 cut(s) 13, 251, 410
Bme18I GGWCC 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 272
BplI GAGNNNNNCTC 2 cut(s) 152, 184
Bse1I ACTGG 1 cut(s) 312
Bse3DI GCAATG 1 cut(s) 261
BseGI GGATG 2 cut(s) 27, 349
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 411
BslFI GGGAC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 2 cut(s) 197, 348
Bsp1407I TGTACA 1 cut(s) 93
BspACI CCGC 3 cut(s) 82, 250, 409
BspCNI CTCAG 1 cut(s) 373
BspFNI CGCG 1 cut(s) 411
BspLI GGNNCC 1 cut(s) 272
BspMI ACCTGC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 225
BstAUI TGTACA 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 175, 366
BstDEI CTNAG 2 cut(s) 55, 381
BstF5I GGATG 2 cut(s) 27, 349
BstFNI CGCG 1 cut(s) 411
BstHHI GCGC 1 cut(s) 413
BstMWI GCNNNNNNNGC 2 cut(s) 11, 246
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 1 cut(s) 23
BtsCI GGATG 2 cut(s) 27, 349
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 175, 366
CaiI CAGNNNCTG 1 cut(s) 17
CfoI GCGC 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 270
Csp6I GTAC 1 cut(s) 94
CviAII CATG 1 cut(s) 32
CviJI RGCY 8 cut(s) 14, 26, 136, 156, 249, 368, 391, 408
CviKI_1 RGCY 8 cut(s) 14, 26, 136, 156, 249, 368, 391, 408
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 55, 381
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 270
FaeI CATG 1 cut(s) 35
FaiI YATR 6 cut(s) 33, 89, 210, 222, 281, 309
FaqI GGGAC 1 cut(s) 256
FatI CATG 1 cut(s) 31
Fnu4HI GCNGC 3 cut(s) 12, 250, 409
FokI GGATG 2 cut(s) 34, 356
Fsp4HI GCNGC 3 cut(s) 12, 250, 409
GlaI GCGC 1 cut(s) 412
GluI GCNGC 3 cut(s) 12, 250, 409
HhaI GCGC 1 cut(s) 413
Hin1II CATG 1 cut(s) 35
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HindIII AAGCTT 1 cut(s) 134
HphI GGTGA 2 cut(s) 152, 301
Hpy166II GTNNAC 2 cut(s) 94, 143
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 2 cut(s) 94, 143
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 4 cut(s) 11, 31, 42, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 246
HpyF3I CTNAG 2 cut(s) 55, 381
Hsp92II CATG 1 cut(s) 35
HspAI GCGC 1 cut(s) 411
LpnPI CCDG 9 cut(s) 3, 104, 187, 195, 254, 288, 310, 325, 338
Lsp1109I GCAGC 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 223
MboII GAAGA 1 cut(s) 242
MluCI AATT 1 cut(s) 415
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 4 cut(s) 25, 97, 154, 188
MseI TTAA 1 cut(s) 418
Mva1269I GAATGC 2 cut(s) 197, 348
MvnI CGCG 1 cut(s) 411
MwoI GCNNNNNNNGC 2 cut(s) 11, 246
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 223
PctI GAATGC 2 cut(s) 197, 348
PkrI GCNGC 3 cut(s) 13, 251, 410
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 270
PstNI CAGNNNCTG 1 cut(s) 17
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 418
SatI GCNGC 3 cut(s) 12, 250, 409
Sau96I GGNCC 1 cut(s) 270
SetI ASST 6 cut(s) 123, 138, 158, 329, 357, 370
SinI GGWCC 1 cut(s) 270
Sse9I AATT 1 cut(s) 415
SsiI CCGC 3 cut(s) 82, 250, 409
TasI AATT 1 cut(s) 415
TatI WGTACW 1 cut(s) 93
TauI GCSGC 2 cut(s) 252, 411
Tru1I TTAA 1 cut(s) 418
Tru9I TTAA 1 cut(s) 418
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 3 cut(s) 76, 204, 250
VpaK11BI GGWCC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.