Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001475

Physical Location & Seq

Genomic Coordinates Forward (+)

24120164 .. 24121949

Gene Structure 1786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCTAATGCAGCATCAGGAATGGCAGTCCATGATGACTGCAAGCTGAAATTTATGGAATTGAAGACGAAAAGGACACACCGTTTCATCATTTACAAGATTGAGGAGCTGCAGAAACAAGTGATTGTTGAGAAAATCGGTGAACCGGGTCAAACCCATGAGGACCTTGCTGCAAGTCTTCCAGCTGATGAATGCCGCTATGCCATTTTCGATTTTGATTTTGTCAGTTCTGAGGGTGTCCCAAGGAGCAGGATTTTTTTCGTGGCATGGTCTCCGGACACAGCAAGAGTGAGAAGCAAGATGATCTATGCGAGCTCCAAGGACAGGTTCAAGAGAGAACTAGACGGAATTCAGGTCGAGCTTCAGGCAACCGATCCAACCGAGATGGATCTTGATGTTTTCAAAAGCCGAGCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007165 GO:0008150 GO:0008154 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0022411 GO:0023052 GO:0030029 GO:0030036 GO:0030042 GO:0030054 GO:0031347 GO:0031349 GO:0032984 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0046686 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051261 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071840 GO:0071944 GO:0080134 GO:0097435 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

139

Amino Acids

15.92

Weight (kDa)

5.94

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cofilin_ADF	PF00241	7 - 96	7e-21	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46000 AT3G46000 AT3G46000 AT3G46010 AT3G46010 AT5G59880 AT5G59890 AT5G59890 AT5G59890
fragaria_vesca	FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_7g21550
malus_domestica	MD01G1122300.v1.1 MD04G1122600.v1.1 MD07G1191800.v1.1 MD12G1138800.v1.1
prunus_persica	Prupe.2G229900_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1
pyrus_communis	pycom04g11090 pycom07g18120 pycom12g13310
rosa_chinensis	RchiOBHm_Chr1g0365871 RchiOBHm_Chr3g0467221
rosa_laevigata	RLG00000024518 RLG00000027384
rosa_multiflora	Rmu_co8241371.1_g000001 Rmu_sc0004288.1_g000018 Rmu_sc0004404.1_g000004 Rmu_sc0004404.1_g000011 Rmu_sc0006406.1_g000003
rosa_roxburghii	Rroxscaffold_6G00413810 Rroxscaffold_6G00420950
rosa_rugosa	Rorug01G0325000 Rorug03G0030100.1 Rorug03G0085800 Rorug03G0085900
rosa_samantha	Rh1AG334200 Rh1BG294800 Rh1CG311500 Rh1DG327200 Rh3AG134300 Rh3BG155600 Rh3CG091500 Rh3CG155200 Rh3DG156400
rosa_wichuraiana	Rw1G029650 Rw3G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	2 cut(s)	368, 396
AcsI	RAATTY	2 cut(s)	50, 348
AcuI	CTGAAG	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	3 cut(s)	64, 331, 403
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	5 cut(s)	46, 109, 185, 315, 361
AluI	AGCT	5 cut(s)	46, 109, 185, 315, 361
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	2 cut(s)	368, 396
Aor13HI	TCCGGA	1 cut(s)	274
ApeKI	GCWGC	3 cut(s)	11, 109, 170
ApoI	RAATTY	2 cut(s)	50, 348
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	317
BbsI	GAAGAC	2 cut(s)	71, 170
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	3 cut(s)	23, 96, 157
BccI	CCATC	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	110
BisI	GCNGC	4 cut(s)	12, 110, 171, 196
BlsI	GCNGC	4 cut(s)	13, 111, 172, 197
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	23
BpiI	GAAGAC	2 cut(s)	71, 170
BpuMI	CCSGG	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	242, 318
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
BseAI	TCCGGA	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	242, 318
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	3 cut(s)	23, 96, 157
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	146, 275
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	197
Bso31I	GGTCTC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	3 cut(s)	303, 373, 388
BspACI	CCGC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	223
BspEI	TCCGGA	1 cut(s)	274
BspMAI	CTGCAG	1 cut(s)	114
BspPI	GGATC	2 cut(s)	368, 396
BspTNI	GGTCTC	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	242, 318
BssMI	GATC	3 cut(s)	303, 373, 388
BssT1I	CCWWGG	2 cut(s)	242, 318
Bst4CI	ACNGT	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	44, 313
BstDEI	CTNAG	1 cut(s)	231
BstKTI	GATC	3 cut(s)	306, 376, 391
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	3 cut(s)	303, 373, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	110
BstV1I	GCAGC	3 cut(s)	23, 96, 157
BstV2I	GAAGAC	2 cut(s)	71, 170
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
Cac8I	GCNNGC	2 cut(s)	44, 313
Cfr13I	GGNCC	1 cut(s)	163
CviAII	CATG	3 cut(s)	32, 158, 267
CviJI	RGCY	8 cut(s)	5, 46, 109, 185, 315, 361, 408, 413
CviKI_1	RGCY	8 cut(s)	5, 46, 109, 185, 315, 361, 408, 413
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	3 cut(s)	305, 375, 390
DpnII	GATC	3 cut(s)	303, 373, 388
Ecl136II	GAGCTC	1 cut(s)	315
Eco130I	CCWWGG	2 cut(s)	242, 318
Eco24I	GRGCYC	1 cut(s)	317
Eco31I	GGTCTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	242, 318
EcoT38I	GRGCYC	1 cut(s)	317
ErhI	CCWWGG	2 cut(s)	242, 318
FaeI	CATG	3 cut(s)	35, 161, 270
FaiI	YATR	6 cut(s)	33, 56, 159, 201, 268, 309
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	3 cut(s)	31, 157, 266
Fnu4HI	GCNGC	4 cut(s)	12, 110, 171, 196
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	4 cut(s)	12, 110, 171, 196
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	4 cut(s)	12, 110, 171, 196
HapII	CCGG	2 cut(s)	146, 275
Hin1II	CATG	3 cut(s)	35, 161, 270
HpaII	CCGG	2 cut(s)	146, 275
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	4 cut(s)	18, 275, 331, 392
Hpy8I	GTNNAC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	4 cut(s)	11, 42, 112, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	35, 161, 270
Kpn2I	TCCGGA	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	303, 373, 388
LmnI	GCTCC	3 cut(s)	106, 246, 320
LpnPI	CCDG	8 cut(s)	3, 159, 195, 235, 288, 310, 338, 350
Lsp1109I	GCAGC	3 cut(s)	23, 96, 157
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	341
MalI	GATC	3 cut(s)	305, 375, 390
MboI	GATC	3 cut(s)	303, 373, 388
MboII	GAAGA	2 cut(s)	76, 170
MfeI	CAATTG	1 cut(s)	415
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	4 cut(s)	50, 59, 348, 415
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	3 cut(s)	97, 154, 226
MroI	TCCGGA	1 cut(s)	274
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	2 cut(s)	146, 275
MspR9I	CCNGG	1 cut(s)	147
MunI	CAATTG	1 cut(s)	415
Mva1269I	GAATGC	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	3 cut(s)	303, 373, 388
NlaIII	CATG	3 cut(s)	35, 161, 270
PctI	GAATGC	1 cut(s)	197
PkrI	GCNGC	4 cut(s)	13, 111, 172, 197
PpuMI	RGGWCCY	1 cut(s)	163
Psp124BI	GAGCTC	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	163
PspPPI	RGGWCCY	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	317
SatI	GCNGC	4 cut(s)	12, 110, 171, 196
Sau3AI	GATC	3 cut(s)	303, 373, 388
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	8 cut(s)	48, 111, 168, 187, 317, 329, 357, 363
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	163
Sse9I	AATT	4 cut(s)	50, 59, 348, 415
SsiI	CCGC	1 cut(s)	196
SspMI	CTAG	1 cut(s)	341
SstI	GAGCTC	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	2 cut(s)	242, 318
TaaI	ACNGT	1 cut(s)	83
TaqI	TCGA	2 cut(s)	210, 357
TasI	AATT	4 cut(s)	50, 59, 348, 415
TauI	GCSGC	1 cut(s)	198
TseI	GCWGC	3 cut(s)	11, 109, 170
TspDTI	ATGAA	2 cut(s)	76, 204
TspGWI	ACGGA	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	2 cut(s)	50, 348
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.