Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001475

Physical Location & Seq

Genomic Coordinates Reverse (-)

58569755 .. 58571832

Gene Structure 2078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG311500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCTGTGCATGATGACTGCAAGTTGAAGTTCTTAGACTTGAAGGCAAAACGAACTTACCGCTTCATAGTTTACAAGATTGAGGAGAAGCAAAAGCAGGTTGTAGTGGAAAAGCTTGGTGAACCAAGTCAGAGCTACGAGGATTTCTCTGCCTGCCTCCCTGCTGATGAATGCCGATACGCTGTCTATGACTTTGATTATGTGACAGAAGAGAACTGCCAGAAGAGCCGCATTATTTTCATTGCTTGGTCCCCTGACATATCAAGGGTGAGAAGCAAGATGATTTATGCCAGTTCAAAGGACAGGTTCAAGAGAGAGTTGGATGGCATTCAGGTTGAGTTACAAGCTACTGACCCTACTGAGATGGGGCTTGATGTGATTAGAAGCCGTGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

132

Amino Acids

15.46

Weight (kDa)

5.91

Isoelectric Point (pI)

62.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cofilin_ADF	PF00241	2 - 131	4.3e-40	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46000 AT3G46000 AT3G46000 AT3G46010 AT3G46010 AT5G59880 AT5G59890 AT5G59890 AT5G59890
fragaria_vesca	FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_7g21550
malus_domestica	MD01G1122300.v1.1 MD04G1122600.v1.1 MD07G1191800.v1.1 MD12G1138800.v1.1
prunus_persica	Prupe.2G229900_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1
pyrus_communis	pycom04g11090 pycom07g18120 pycom12g13310
rosa_chinensis	RchiOBHm_Chr1g0365871 RchiOBHm_Chr3g0467221
rosa_laevigata	RLG00000024518 RLG00000027384
rosa_multiflora	Rmu_co8241371.1_g000001 Rmu_sc0004288.1_g000018 Rmu_sc0004404.1_g000004 Rmu_sc0004404.1_g000011 Rmu_sc0006406.1_g000003
rosa_roxburghii	Rroxscaffold_6G00413810 Rroxscaffold_6G00420950
rosa_rugosa	Rorug01G0325000 Rorug03G0030100.1 Rorug03G0085800 Rorug03G0085900
rosa_samantha	Rh1AG334200 Rh1BG294800 Rh1CG311500 Rh1DG327200 Rh3AG134300 Rh3BG155600 Rh3CG091500 Rh3CG155200 Rh3DG156400
rosa_wichuraiana	Rw1G029650 Rw3G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	88
AciI	CCGC	2 cut(s)	61, 229
AgsI	TTSAA	4 cut(s)	28, 43, 297, 310
AluBI	AGCT	3 cut(s)	115, 135, 347
AluI	AGCT	3 cut(s)	115, 135, 347
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	2 cut(s)	131, 280
AvaII	GGWCC	1 cut(s)	249
BccI	CCATC	2 cut(s)	317, 358
BceAI	ACGGC	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	251
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
Bse1I	ACTGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	291
BseRI	GAGGAG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	235
BsmI	GAATGC	2 cut(s)	176, 327
BspACI	CCGC	2 cut(s)	61, 229
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	251
BspMI	ACCTGC	1 cut(s)	88
BspQI	GCTCTTC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	291
Bst6I	CTCTTC	2 cut(s)	204, 218
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	34, 360
BstF5I	GGATG	1 cut(s)	328
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	328
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	249
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	7 cut(s)	5, 115, 135, 228, 347, 370, 387
CviKI_1	RGCY	7 cut(s)	5, 115, 135, 228, 347, 370, 387
DdeI	CTNAG	2 cut(s)	34, 360
Eam1104I	CTCTTC	2 cut(s)	204, 218
EarI	CTCTTC	2 cut(s)	204, 218
Eco47I	GGWCC	1 cut(s)	249
FaeI	CATG	1 cut(s)	14
FaiI	YATR	6 cut(s)	12, 68, 189, 201, 260, 288
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	229
Hin1II	CATG	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	113
HphI	GGTGA	2 cut(s)	131, 280
Hpy166II	GTNNAC	2 cut(s)	73, 122
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	1 cut(s)	310
Hpy8I	GTNNAC	2 cut(s)	73, 122
HpyAV	CCTTC	1 cut(s)	37
HpyCH4V	TGCA	2 cut(s)	10, 21
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	2 cut(s)	34, 360
Hsp92II	CATG	1 cut(s)	14
LguI	GCTCTTC	1 cut(s)	218
LpnPI	CCDG	8 cut(s)	83, 166, 174, 233, 267, 289, 304, 317
MaeIII	GTNAC	2 cut(s)	202, 339
MboII	GAAGA	2 cut(s)	221, 235
MluCI	AATT	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	3 cut(s)	76, 133, 167
MseI	TTAA	1 cut(s)	397
Mva1269I	GAATGC	2 cut(s)	176, 327
MwoI	GCNNNNNNNGC	1 cut(s)	225
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	218
PctI	GAATGC	2 cut(s)	176, 327
PkrI	GCNGC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	397
SatI	GCNGC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	249
SetI	ASST	6 cut(s)	102, 117, 137, 308, 336, 349
SinI	GGWCC	1 cut(s)	249
Sse9I	AATT	1 cut(s)	394
SsiI	CCGC	2 cut(s)	61, 229
TasI	AATT	1 cut(s)	394
TauI	GCSGC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	397
Tru9I	TTAA	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	55, 183, 229
VpaK11BI	GGWCC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.