Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001475

Physical Location & Seq

Genomic Coordinates Reverse (-)

25472721 .. 25474438

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G229900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCAAACGCAGCGTCTGGGATGGCTGTGCATGATGAATGCAAGCTAAAGTTTTTAGAATTGAAGGCAAAACGAACTTACCGCTTCATAGTGTACAAGATAGAGGAGAAGCAAAAGCAGGTTATAGTGGAAAAGGTGGGTGAACCAGCTGATAGCTACGAGGATTTCTCTGCAAGCCTCCCTGCTGATGAATGCCGATACGCTGTCTATGACTTTGATTATGTGACTGAGGAGAACTGCCAGAAGAGCCGGATTATTTTCATTGCTTGGTCCCCTGACACATCGAAGGTGAGAAGCAAAATGATCTATGCTAGTTCGAAGGACAGGTTTAAGAGAGAGTTGGACGGTATTCAGGTAGAGTTGCAAGCTACCGATCCAACCGAAATGGGCCTTGATGTTATTAGAAGCCGGGCGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

140

Amino Acids

15.99

Weight (kDa)

5.55

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46000 AT3G46000 AT3G46000 AT3G46010 AT3G46010 AT5G59880 AT5G59890 AT5G59890 AT5G59890
fragaria_vesca	FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_6g14260 FvH4_7g21550
malus_domestica	MD01G1122300.v1.1 MD04G1122600.v1.1 MD07G1191800.v1.1 MD12G1138800.v1.1
prunus_persica	Prupe.2G229900_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1 Prupe.6G250700_v2.0.a1
pyrus_communis	pycom04g11090 pycom07g18120 pycom12g13310
rosa_chinensis	RchiOBHm_Chr1g0365871 RchiOBHm_Chr3g0467221
rosa_laevigata	RLG00000024518 RLG00000027384
rosa_multiflora	Rmu_co8241371.1_g000001 Rmu_sc0004288.1_g000018 Rmu_sc0004404.1_g000004 Rmu_sc0004404.1_g000011 Rmu_sc0006406.1_g000003
rosa_roxburghii	Rroxscaffold_6G00413810 Rroxscaffold_6G00420950
rosa_rugosa	Rorug01G0325000 Rorug03G0030100.1 Rorug03G0085800 Rorug03G0085900
rosa_samantha	Rh1AG334200 Rh1BG294800 Rh1CG311500 Rh1DG327200 Rh3AG134300 Rh3BG155600 Rh3CG091500 Rh3CG155200 Rh3DG156400
rosa_wichuraiana	Rw1G029650 Rw3G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	1 cut(s)	368
AfaI	GTAC	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	4 cut(s)	46, 149, 156, 368
AluI	AGCT	4 cut(s)	46, 149, 156, 368
AlwI	GGATC	1 cut(s)	368
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	11
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	270, 388
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	2 cut(s)	152, 301
AsuII	TTCGAA	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	410
BfaI	CTAG	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	109
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	410
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	2 cut(s)	270, 388
BmiI	GGNNCC	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	410
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
Bpu14I	TTCGAA	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	410
Bse3DI	GCAATG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	219
BseRI	GAGGAG	2 cut(s)	119, 245
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	390
BsiSI	CCGG	2 cut(s)	250, 409
BslFI	GGGAC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	2 cut(s)	44, 197
BsnI	GGCC	1 cut(s)	390
Bsp119I	TTCGAA	1 cut(s)	317
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	303, 373
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	390
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	272
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	368
BspQI	GCTCTTC	1 cut(s)	239
BspT104I	TTCGAA	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	93
BssMI	GATC	2 cut(s)	303, 373
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	317
BstC8I	GCNNGC	3 cut(s)	44, 175, 366
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	27
BstKTI	GATC	2 cut(s)	306, 376
BstMBI	GATC	2 cut(s)	303, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 246
BstSCI	CCNGG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	3 cut(s)	44, 175, 366
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	270, 388
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	9 cut(s)	26, 46, 149, 156, 177, 249, 368, 390, 408
CviKI_1	RGCY	9 cut(s)	26, 46, 149, 156, 177, 249, 368, 390, 408
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	2 cut(s)	305, 375
DpnII	GATC	2 cut(s)	303, 373
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	270
FaeI	CATG	1 cut(s)	35
FaiI	YATR	6 cut(s)	33, 89, 125, 210, 222, 309
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	390
HapII	CCGG	2 cut(s)	250, 409
HgaI	GACGC	1 cut(s)	3
Hin1II	CATG	1 cut(s)	35
HpaII	CCGG	2 cut(s)	250, 409
HphI	GGTGA	2 cut(s)	152, 301
Hpy166II	GTNNAC	2 cut(s)	94, 143
Hpy8I	GTNNAC	2 cut(s)	94, 143
HpyAV	CCTTC	3 cut(s)	58, 280, 313
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4V	TGCA	4 cut(s)	31, 42, 173, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 246
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	303, 373
LguI	GCTCTTC	1 cut(s)	239
LpnPI	CCDG	9 cut(s)	3, 104, 159, 195, 254, 263, 288, 310, 338
Lsp1109I	GCAGC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	305, 375
MboI	GATC	2 cut(s)	303, 373
MboII	GAAGA	1 cut(s)	256
MluCI	AATT	1 cut(s)	59
MmeI	TCCRAC	2 cut(s)	321, 401
MnlI	CCTC	4 cut(s)	97, 154, 188, 223
MseI	TTAA	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	2 cut(s)	250, 409
MspR9I	CCNGG	1 cut(s)	410
Mva1269I	GAATGC	2 cut(s)	44, 197
MwoI	GCNNNNNNNGC	2 cut(s)	11, 246
NciI	CCSGG	1 cut(s)	410
NdeII	GATC	2 cut(s)	303, 373
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	223
NspV	TTCGAA	1 cut(s)	317
PciSI	GCTCTTC	1 cut(s)	239
PctI	GAATGC	2 cut(s)	44, 197
PkrI	GCNGC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	272
PspPI	GGNCC	2 cut(s)	270, 388
PstNI	CAGNNNCTG	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	303, 373
Sau96I	GGNCC	2 cut(s)	270, 388
ScrFI	CCNGG	1 cut(s)	410
SetI	ASST	9 cut(s)	48, 123, 138, 151, 158, 291, 329, 357, 370
SfuI	TTCGAA	1 cut(s)	317
SinI	GGWCC	1 cut(s)	270
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	2 cut(s)	284, 317
TasI	AATT	1 cut(s)	59
TatI	WGTACW	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	4 cut(s)	51, 76, 204, 250
VpaK11BI	GGWCC	1 cut(s)	270
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.