Rh3CG091500

Belongs to the actin-binding proteins ADF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001475
Physical Location & Seq
Reverse (-)
7118635 .. 7118961
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG091500.1

Sequence Viewer

Length: 327 bp
ATGTATGGTGTTGTTATAAGGTATGGTGTTTCTAAGTTAATTTTTTGCAATTCACAGGCCGATGCAGCATCTGGTATCGCTCTGCACAAAGAGTGCAAGTTGAAGTTTCTGGAGCTCAAGACAAAGAGGACCTACCGTTCAGTAGTTTTCAAGATTGAGGAGGAGCAAAAGAAAGTTATTGTGGAAGCAACTGGTGATCCAACAGAAACATATGAGGCTTTCACAAATAGTCTTCCTACTGATGAATGCTGTTATGCTGTTTTCGATTTCGATCTTCCTATACCAGAGGGCGTCCCAAAAAGGCAGATATTGTTTATTGCCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
Cofilin_ADF

Protein Analysis

108

Amino Acids

12.23

Weight (kDa)

5.83

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 25 - 107 8.1e-15 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 17, 325
AclWI GGATC 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 291
AgsI TTSAA 2 cut(s) 103, 151
AloI GAACNNNNNNTCC 2 cut(s) 121, 153
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw21I GWGCWC 1 cut(s) 117
AlwI GGATC 1 cut(s) 191
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 129
BanII GRGCYC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 77
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 129
BmsI GCATC 2 cut(s) 52, 77
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 101
BsaBI GATNNNNATC 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 270
BseJI GATNNNNATC 1 cut(s) 270
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 2 cut(s) 173, 176
BseXI GCAGC 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 68
BshFI GGCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 117
BslFI GGGAC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 278
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 2 cut(s) 196, 271
BspANI GGCC 1 cut(s) 59
BspPI GGATC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 196
BssMI GATC 2 cut(s) 196, 271
BssNI GRCGYC 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 33
BstKTI GATC 2 cut(s) 199, 274
BstMBI GATC 2 cut(s) 196, 271
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 59
CaiI CAGNNNCTG 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 129
CseI GACGC 1 cut(s) 280
CviJI RGCY 3 cut(s) 59, 115, 218
CviKI_1 RGCY 3 cut(s) 59, 115, 218
DdeI CTNAG 1 cut(s) 33
DpnI GATC 2 cut(s) 198, 273
DpnII GATC 2 cut(s) 196, 271
Ecl136II GAGCTC 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 115
EcoICRI GAGCTC 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 117
FaiI YATR 8 cut(s) 6, 17, 24, 211, 213, 255, 281, 325
FaqI GGGAC 1 cut(s) 278
FauNDI CATATG 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 66
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 1 cut(s) 59
HgaI GACGC 1 cut(s) 280
Hin1I GRCGYC 1 cut(s) 291
HphI GGTGA 1 cut(s) 206
Hpy188III TCNNGA 3 cut(s) 110, 118, 151
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 4 cut(s) 48, 65, 85, 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 291
Kzo9I GATC 2 cut(s) 196, 271
LmnI GCTCC 2 cut(s) 112, 163
LpnPI CCDG 5 cut(s) 41, 57, 95, 177, 297
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 2 cut(s) 52, 77
MalI GATC 2 cut(s) 198, 273
MboI GATC 2 cut(s) 196, 271
MboII GAAGA 2 cut(s) 224, 266
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 2 cut(s) 39, 49
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 5 cut(s) 120, 151, 154, 208, 280
MseI TTAA 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeI CATATG 1 cut(s) 211
NdeII GATC 2 cut(s) 196, 271
PctI GAATGC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 67
PpuMI RGGWCCY 1 cut(s) 129
PsiI TTATAA 2 cut(s) 17, 325
Psp124BI GAGCTC 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 129
PspPI GGNCC 1 cut(s) 129
PspPPI RGGWCCY 1 cut(s) 129
PstNI CAGNNNCTG 1 cut(s) 71
SacI GAGCTC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 2 cut(s) 196, 271
Sau96I GGNCC 1 cut(s) 129
SduI GDGCHC 1 cut(s) 117
SetI ASST 3 cut(s) 23, 117, 134
SfaNI GCATC 2 cut(s) 52, 77
SgeI CNNG 8 cut(s) 68, 84, 109, 122, 130, 163, 204, 296
SinI GGWCC 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 2 cut(s) 39, 49
SstI GAGCTC 1 cut(s) 117
TaaI ACNGT 1 cut(s) 137
TaqI TCGA 2 cut(s) 264, 270
TasI AATT 2 cut(s) 39, 49
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.