FvH4_7g21550

Belongs to the actin-binding proteins ADF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001475
Physical Location & Seq
Reverse (-)
17218009 .. 17219818
1810 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21550.t1

Sequence Viewer

Length: 420 bp
ATGGCAAACGCAGCATCTGGGATGGCTGTGCATGATGACTGTAAGTTGAAGTTCTTAGACTTGAAGGCAAAACGAACGTACCGCTTCATTGTTTACAAGATTGAGGAGAAGCAAAAGCAGGTCGTGGTGGAAAAGGTTGGTGAACCAAGTGAGAGTTATGAGGATTTCTCTGCCTGCCTCCCTGCTGATGAATGCCGATATGCTGTGTATGACTTTGATTATGTGACAGAAGAGAACTGCCAGAAGAGCCGAATTATTTTTATTGCTTGGTCCCCTGACATATCAAGGGTGAGAAGCAAGATGATTTACGCCAGTTCGAAGGACAGGTTCAAGAGAGAGTTGGATGGCATTCAGGTTGAGTTGCAAGCTACTGATCCTACCGAGATGGGGCTTGATGTGATTAGAAGCCGTGCTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
Cofilin_ADF

Protein Analysis

140

Amino Acids

16.05

Weight (kDa)

5.54

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 7 - 138 1.5e-40 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AciI CCGC 1 cut(s) 82
AclWI GGATC 1 cut(s) 368
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 387
AgsI TTSAA 3 cut(s) 49, 64, 331
AluBI AGCT 1 cut(s) 368
AluI AGCT 1 cut(s) 368
AlwI GGATC 1 cut(s) 368
AlwNI CAGNNNCTG 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 152, 301
AsuII TTCGAA 1 cut(s) 317
AvaII GGWCC 1 cut(s) 270
BaeI ACNNNNGTAYC 2 cut(s) 62, 95
BbvI GCAGC 1 cut(s) 23
BccI CCATC 3 cut(s) 16, 338, 379
BceAI ACGGC 1 cut(s) 393
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 272
BmsI GCATC 1 cut(s) 23
BplI GAGNNNNNCTC 2 cut(s) 152, 184
Bpu14I TTCGAA 1 cut(s) 317
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse1I ACTGG 1 cut(s) 312
BseGI GGATG 2 cut(s) 27, 349
BseLI CCNNNNNNNGG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 23
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 2 cut(s) 197, 348
Bsp119I TTCGAA 1 cut(s) 317
Bsp143I GATC 1 cut(s) 373
BspACI CCGC 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 272
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 1 cut(s) 368
BspQI GCTCTTC 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 317
BsrI ACTGG 1 cut(s) 312
BssMI GATC 1 cut(s) 373
Bst4CI ACNGT 1 cut(s) 41
Bst6I CTCTTC 2 cut(s) 225, 239
BstBI TTCGAA 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 175, 366
BstDEI CTNAG 1 cut(s) 55
BstF5I GGATG 2 cut(s) 27, 349
BstKTI GATC 1 cut(s) 376
BstMBI GATC 1 cut(s) 373
BstMWI GCNNNNNNNGC 2 cut(s) 11, 246
BstV1I GCAGC 1 cut(s) 23
BtsCI GGATG 2 cut(s) 27, 349
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 175, 366
CaiI CAGNNNCTG 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 270
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 32
CviJI RGCY 5 cut(s) 26, 249, 368, 391, 408
CviKI_1 RGCY 5 cut(s) 26, 249, 368, 391, 408
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 55
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
Eam1104I CTCTTC 2 cut(s) 225, 239
EarI CTCTTC 2 cut(s) 225, 239
Eco47I GGWCC 1 cut(s) 270
FaeI CATG 1 cut(s) 35
FaiI YATR 6 cut(s) 33, 159, 201, 210, 222, 281
FaqI GGGAC 1 cut(s) 256
FatI CATG 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 2 cut(s) 34, 356
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
Hin1II CATG 1 cut(s) 35
HphI GGTGA 2 cut(s) 152, 301
Hpy166II GTNNAC 2 cut(s) 94, 143
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 2 cut(s) 94, 143
HpyAV CCTTC 2 cut(s) 58, 313
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 2 cut(s) 31, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 246
HpyF3I CTNAG 1 cut(s) 55
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 1 cut(s) 35
Kzo9I GATC 1 cut(s) 373
LguI GCTCTTC 1 cut(s) 239
LpnPI CCDG 9 cut(s) 3, 104, 187, 195, 254, 288, 310, 325, 338
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 23
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 2 cut(s) 242, 256
MluCI AATT 1 cut(s) 252
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 3 cut(s) 97, 154, 188
Mva1269I GAATGC 2 cut(s) 197, 348
MwoI GCNNNNNNNGC 2 cut(s) 11, 246
NdeII GATC 1 cut(s) 373
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 223
NspV TTCGAA 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 239
PctI GAATGC 2 cut(s) 197, 348
PkrI GCNGC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 270
PstNI CAGNNNCTG 1 cut(s) 17
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SapI GCTCTTC 1 cut(s) 239
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 1 cut(s) 270
SetI ASST 6 cut(s) 80, 123, 138, 329, 357, 370
SfaNI GCATC 1 cut(s) 23
SfuI TTCGAA 1 cut(s) 317
SinI GGWCC 1 cut(s) 270
Sse9I AATT 1 cut(s) 252
SsiI CCGC 1 cut(s) 82
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 317
TasI AATT 1 cut(s) 252
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 76, 204
VpaK11BI GGWCC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.