AT3G54085

Immediate early response 3-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001813
Physical Location & Seq
Reverse (-)
20026581 .. 20027991
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54085.2

Sequence Viewer

Length: 237 bp
ATGGGCTTCTGGACATTGTTAAAAGGTCTGCTGCTCTTTGCAAATGCACTGGCAATCCTCAACGAAGACCGTTTCCTTGTTCCAAGAGGATGGACACTCGGAGAACTCCACCAAACCGATAGAAGAAACTCTCCCAAAGGCCAAATCATTGGTCTGATCCATGCCTGCCAGTACATGAGGCTACCCCTCATGCTCATTAACACAGCAGTCATCGTCTTGAAGCTTATCTCCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yos1

Protein Analysis

78

Amino Acids

8.79

Weight (kDa)

10.02

Isoelectric Point (pI)

29.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yos1 PF08571 3 - 78 3.2e-24 Yos1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 151
AfaI GTAC 1 cut(s) 173
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
AlwI GGATC 1 cut(s) 151
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 31
ArsI GACNNNNNNTTYG 2 cut(s) 136, 168
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 18
BccI CCATC 1 cut(s) 84
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 54, 169
BseGI GGATG 1 cut(s) 95
BseNI ACTGG 2 cut(s) 54, 169
BseXI GCAGC 1 cut(s) 18
BshFI GGCC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 231
BsnI GGCC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 156
BspANI GGCC 1 cut(s) 141
BspPI GGATC 1 cut(s) 151
BsrI ACTGG 2 cut(s) 54, 169
BssMI GATC 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 166
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 18
BstV2I GAAGAC 1 cut(s) 72
BstXI CCANNNNNNTGG 2 cut(s) 90, 149
BsuRI GGCC 1 cut(s) 141
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 172
CviAII CATG 3 cut(s) 161, 175, 190
CviJI RGCY 4 cut(s) 6, 141, 181, 223
CviKI_1 RGCY 4 cut(s) 6, 141, 181, 223
CviQI GTAC 1 cut(s) 172
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
FaeI CATG 3 cut(s) 164, 178, 193
FaiI YATR 3 cut(s) 162, 176, 191
FatI CATG 3 cut(s) 160, 174, 189
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 32
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 231
Hin1II CATG 3 cut(s) 164, 178, 193
HindIII AAGCTT 1 cut(s) 221
HpaII CCGG 1 cut(s) 231
Hpy188I TCNGA 2 cut(s) 101, 156
Hpy188III TCNNGA 2 cut(s) 10, 217
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 41, 47
Hsp92II CATG 3 cut(s) 164, 178, 193
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 3 cut(s) 35, 178, 182
Lsp1109I GCAGC 1 cut(s) 18
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 2 cut(s) 77, 135
MnlI CCTC 4 cut(s) 68, 80, 171, 197
MseI TTAA 2 cut(s) 20, 198
MspI CCGG 1 cut(s) 231
NdeII GATC 1 cut(s) 156
NlaIII CATG 3 cut(s) 164, 178, 193
PkrI GCNGC 1 cut(s) 33
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SaqAI TTAA 2 cut(s) 20, 198
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 1 cut(s) 156
SetI ASST 2 cut(s) 28, 225
TaaI ACNGT 1 cut(s) 71
TatI WGTACW 1 cut(s) 171
Tru1I TTAA 2 cut(s) 20, 198
Tru9I TTAA 2 cut(s) 20, 198
TscAI CASTG 1 cut(s) 54
TseI GCWGC 1 cut(s) 31
TspRI CASTG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.