Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001813

Physical Location & Seq

Genomic Coordinates Reverse (-)

16086905 .. 16087968

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13070.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTCATTAAGTGATACTCCTTTTGATTTGATTTGCGATGACTGTCGCTCTTTCCTGTTGTTTCGTCTCGGTGTTGTTGAAATCAAGGCGAAGGCTTTCGACCGTGAAACGACTTGTTGTCTGGAACAAGTAATCGCCGGCACAGTTGGGACTGCTTTCTTTCTCCTCATAAGCACTTTTGCTAAAATGGGATTGTGGACTGTATTCCAAGGCTTCTTGCTGCTCGCAAACGCATTCGCCATACTGAACGAAGATCGGTTTTTGGGTCCGAGAGGGTGGACCTTGCTGCAATTGCAAGGAAGGAGGAGAACTACGCTTAAGGGGCAGATCATAGGATTTATACATGCATGCCAATTCTTCAGATTTCCTCTCATAATTTTGAACCTAGTTACTATTGTAGTGAAGCTCATCTCCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yos1

Protein Analysis

140

Amino Acids

15.62

Weight (kDa)

9.01

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37975 AT2G37975 AT3G54085 AT3G54085 AT3G54085
fragaria_vesca	FvH4_6g12280 FvH4_6g12280 FvH4_6g12280 FvH4_6g12280 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790
malus_domestica	MD04G1144200.v1.1 MD12G1158300.v1.1
prunus_persica	Prupe.2G244600_v2.0.a1 Prupe.2G244600_v2.0.a1 Prupe.2G244600_v2.0.a1 Prupe.6G268600_v2.0.a1 Prupe.6G268700_v2.0.a1
pyrus_communis	pycom01g16480 pycom04g13070 pycom12g15030
rosa_chinensis	RchiOBHm_Chr1g0369131 RchiOBHm_Chr3g0464081 RchiOBHm_Chr6g0266781
rosa_laevigata	RLG00000001475 RLG00000002225 RLG00000008995 RLG00000014079
rosa_multiflora	Rmu_sc0012140.1_g000012
rosa_roxburghii	Rroxscaffold_7G00162500 Rroxscaffold_7G00201440
rosa_rugosa	Rorug01G0348200 Rorug03G0070700 Rorug06G0027400
rosa_samantha	Rh3BG131800 Rh5CG489100 Rh6BG148500 Rh6CG144200 Rh6DG133100
rosa_wichuraiana	Rw1G031340 Rw3G010780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	343
AflII	CTTAAG	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	80, 382
AhdI	GACNNNNNGTC	1 cut(s)	117
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw26I	GTCTC	1 cut(s)	71
ApeKI	GCWGC	2 cut(s)	220, 286
Asp700I	GAANNNNTTC	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	266, 279
AsuC2I	CCSGG	1 cut(s)	415
AvaII	GGWCC	2 cut(s)	266, 279
BbvI	GCAGC	2 cut(s)	207, 273
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	386
BfrI	CTTAAG	1 cut(s)	317
BisI	GCNGC	2 cut(s)	221, 287
BlsI	GCNGC	2 cut(s)	222, 288
Bme1390I	CCNGG	1 cut(s)	415
Bme18I	GGWCC	2 cut(s)	266, 279
BmeRI	GACNNNNNGTC	1 cut(s)	117
BmgT120I	GGNCC	2 cut(s)	266, 279
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	415
BsaJI	CCNNGG	1 cut(s)	208
Bse118I	RCCGGY	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	155, 319
BseXI	GCAGC	2 cut(s)	207, 273
Bsh1285I	CGRYCG	1 cut(s)	103
BsiEI	CGRYCG	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	138, 414
BslFI	GGGAC	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	71
BsmBI	CGTCTC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	163
BsmI	GAATGC	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	253, 327
BspLI	GGNNCC	1 cut(s)	267
BspTI	CTTAAG	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	2 cut(s)	253, 327
BssT1I	CCWWGG	1 cut(s)	208
Bst4CI	ACNGT	4 cut(s)	44, 104, 145, 202
BstAFI	CTTAAG	1 cut(s)	317
BstC8I	GCNNGC	3 cut(s)	139, 225, 349
BstKTI	GATC	2 cut(s)	256, 330
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	2 cut(s)	253, 327
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	292, 322
BstNSI	RCATGY	2 cut(s)	347, 351
BstSCI	CCNGG	1 cut(s)	413
BstV1I	GCAGC	2 cut(s)	207, 273
BtgZI	GCGATG	1 cut(s)	51
Cac8I	GCNNGC	3 cut(s)	139, 225, 349
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	266, 279
CviAII	CATG	2 cut(s)	344, 348
CviJI	RGCY	3 cut(s)	95, 213, 406
CviKI_1	RGCY	3 cut(s)	95, 213, 406
DpnI	GATC	2 cut(s)	255, 329
DpnII	GATC	2 cut(s)	253, 327
DriI	GACNNNNNGTC	1 cut(s)	117
Eam1105I	GACNNNNNGTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	266, 279
Eco57I	CTGAAG	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	208
Esp3I	CGTCTC	1 cut(s)	71
FaeI	CATG	2 cut(s)	347, 351
FaiI	YATR	7 cut(s)	170, 242, 332, 341, 345, 349, 374
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	343, 347
Fnu4HI	GCNGC	2 cut(s)	221, 287
Fsp4HI	GCNGC	2 cut(s)	221, 287
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	2 cut(s)	221, 287
HapII	CCGG	2 cut(s)	138, 414
Hin1II	CATG	2 cut(s)	347, 351
HpaII	CCGG	2 cut(s)	138, 414
Hpy166II	GTNNAC	2 cut(s)	198, 279
Hpy188I	TCNGA	2 cut(s)	270, 362
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	2 cut(s)	198, 279
HpyAV	CCTTC	2 cut(s)	85, 294
HpyCH4III	ACNGT	4 cut(s)	44, 104, 145, 202
HpyCH4V	TGCA	3 cut(s)	289, 295, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	292, 322
Hsp92II	CATG	2 cut(s)	347, 351
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	253, 327
LpnPI	CCDG	3 cut(s)	68, 107, 151
Lsp1109I	GCAGC	2 cut(s)	207, 273
MaeI	CTAG	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	2 cut(s)	255, 329
MboI	GATC	2 cut(s)	253, 327
MboII	GAAGA	2 cut(s)	263, 349
MfeI	CAATTG	1 cut(s)	290
MluCI	AATT	3 cut(s)	290, 353, 375
MnlI	CCTC	4 cut(s)	176, 266, 297, 378
Mph1103I	ATGCAT	1 cut(s)	349
MroNI	GCCGGC	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	95
MseI	TTAA	2 cut(s)	8, 318
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	2 cut(s)	138, 414
MspR9I	CCNGG	1 cut(s)	415
MunI	CAATTG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	233
MwoI	GCNNNNNNNGC	2 cut(s)	292, 322
NaeI	GCCGGC	1 cut(s)	139
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	2 cut(s)	253, 327
NgoMIV	GCCGGC	1 cut(s)	137
NlaIII	CATG	2 cut(s)	347, 351
NlaIV	GGNNCC	1 cut(s)	267
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	2 cut(s)	347, 351
PaeI	GCATGC	1 cut(s)	351
PctI	GAATGC	1 cut(s)	233
PdiI	GCCGGC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	222, 288
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	2 cut(s)	266, 279
SaqAI	TTAA	2 cut(s)	8, 318
SatI	GCNGC	2 cut(s)	221, 287
Sau3AI	GATC	2 cut(s)	253, 327
Sau96I	GGNCC	2 cut(s)	266, 279
ScrFI	CCNGG	1 cut(s)	415
SetI	ASST	3 cut(s)	284, 387, 408
SinI	GGWCC	2 cut(s)	266, 279
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SphI	GCATGC	1 cut(s)	351
Sse9I	AATT	3 cut(s)	290, 353, 375
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	4 cut(s)	44, 104, 145, 202
TaqI	TCGA	1 cut(s)	99
TasI	AATT	3 cut(s)	290, 353, 375
Tru1I	TTAA	2 cut(s)	8, 318
Tru9I	TTAA	2 cut(s)	8, 318
TseI	GCWGC	2 cut(s)	220, 286
Vha464I	CTTAAG	1 cut(s)	317
VpaK11BI	GGWCC	2 cut(s)	266, 279
XceI	RCATGY	2 cut(s)	347, 351
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	1 cut(s)	386
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.