Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001813

Physical Location & Seq

Genomic Coordinates Forward (+)

4987563 .. 4989621

Gene Structure 2059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCGAAGTTTTCGCGGACTACGCGAACCGGATTCTATCGGTTCCTCCTACAAAGCCTCAACGATGCCAACTCGGACTCGTTCACCGAAAGGCGACTCGGAGGAGACTTGGCCAAAATTGGACCGACTTCTACTCCTCATCCTCCGATGAGGTTGAAGCCTCCCACTCGCACATCAAACACTTCACCGGTATGTCCATTGACGTTAAGGACAAGTTCACCAACTACGCTGCCCGGCACCTTCGCCGGATCCGGCTATTTCGGCGACTACCACGGCGGGTCAACGTCCCCAATCTTCAATCACTTCCTTCGACTTGAGCTCCAACAATTAAAAGCTCTCCTTCACCTGCCTGACCCACCTAAACTCACCAAACCCGCCATTGTTTTCGCCTCCACCGAATTTCACAAACCGTGGTCGCCGGGATACACGCGCTTTGGATGGAACTCGACCCGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.94

Weight (kDa)

10.56

Isoelectric Point (pI)

55.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37975 AT2G37975 AT3G54085 AT3G54085 AT3G54085
fragaria_vesca	FvH4_6g12280 FvH4_6g12280 FvH4_6g12280 FvH4_6g12280 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790
malus_domestica	MD04G1144200.v1.1 MD12G1158300.v1.1
prunus_persica	Prupe.2G244600_v2.0.a1 Prupe.2G244600_v2.0.a1 Prupe.2G244600_v2.0.a1 Prupe.6G268600_v2.0.a1 Prupe.6G268700_v2.0.a1
pyrus_communis	pycom01g16480 pycom04g13070 pycom12g15030
rosa_chinensis	RchiOBHm_Chr1g0369131 RchiOBHm_Chr3g0464081 RchiOBHm_Chr6g0266781
rosa_laevigata	RLG00000001475 RLG00000002225 RLG00000008995 RLG00000014079
rosa_multiflora	Rmu_sc0012140.1_g000012
rosa_roxburghii	Rroxscaffold_7G00162500 Rroxscaffold_7G00201440
rosa_rugosa	Rorug01G0348200 Rorug03G0070700 Rorug06G0027400
rosa_samantha	Rh3BG131800 Rh5CG489100 Rh6BG148500 Rh6CG144200 Rh6DG133100
rosa_wichuraiana	Rw1G031340 Rw3G010780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	354
Acc36I	ACCTGC	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	236
AccII	CGCG	3 cut(s)	16, 25, 430
AciI	CCGC	4 cut(s)	16, 276, 375, 454
AclWI	GGATC	2 cut(s)	243, 256
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	398
AgeI	ACCGGT	1 cut(s)	187
AgsI	TTSAA	2 cut(s)	157, 298
AluBI	AGCT	2 cut(s)	319, 335
AluI	AGCT	2 cut(s)	319, 335
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	243, 256
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	1 cut(s)	398
AsiGI	ACCGGT	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	3 cut(s)	234, 420, 451
AsuHPI	GGTGA	5 cut(s)	76, 177, 210, 335, 358
AvaII	GGWCC	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	1 cut(s)	432
BceAI	ACGGC	1 cut(s)	289
BciVI	GTATCC	1 cut(s)	416
BcnI	CCSGG	3 cut(s)	234, 420, 451
BcoDI	GTCTC	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	354
BfuI	GTATCC	1 cut(s)	416
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	3 cut(s)	234, 420, 451
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	3 cut(s)	44, 238, 250
BmrFI	CCNGG	3 cut(s)	234, 420, 451
BmsI	GCATC	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	3 cut(s)	234, 420, 451
BsaJI	CCNNGG	2 cut(s)	271, 410
BsaWI	WCCGGW	2 cut(s)	29, 187
BsaXI	ACNNNNNCTCC	4 cut(s)	118, 148, 303, 333
Bse118I	RCCGGY	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	271, 410
BseGI	GGATG	2 cut(s)	139, 443
BseRI	GAGGAG	2 cut(s)	117, 126
BseXI	GCAGC	1 cut(s)	216
Bsh1236I	CGCG	3 cut(s)	16, 25, 430
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	236
BshTI	ACCGGT	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	7 cut(s)	30, 188, 234, 246, 252, 419, 451
BslFI	GGGAC	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	248
BspACI	CCGC	4 cut(s)	16, 276, 375, 454
BspANI	GGCC	1 cut(s)	113
BspFNI	CGCG	3 cut(s)	16, 25, 430
BspLI	GGNNCC	3 cut(s)	44, 238, 250
BspMI	ACCTGC	1 cut(s)	354
BspPI	GGATC	2 cut(s)	243, 256
BspT107I	GGYRCC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	271, 410
BssMI	GATC	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	411
BstDSI	CCRYGG	2 cut(s)	271, 410
BstF5I	GGATG	2 cut(s)	139, 443
BstFNI	CGCG	3 cut(s)	16, 25, 430
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	1 cut(s)	251
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	248
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 261
BstSCI	CCNGG	3 cut(s)	232, 418, 449
BstUI	CGCG	3 cut(s)	16, 25, 430
BstV1I	GCAGC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BsuI	GTATCC	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	2 cut(s)	271, 410
BtsCI	GGATG	2 cut(s)	139, 443
BveI	ACCTGC	1 cut(s)	354
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	122
CspAI	ACCGGT	1 cut(s)	187
CviJI	RGCY	6 cut(s)	57, 113, 160, 255, 319, 335
CviKI_1	RGCY	6 cut(s)	57, 113, 160, 255, 319, 335
DpnI	GATC	1 cut(s)	250
DpnII	GATC	1 cut(s)	248
EaeI	YGGCCR	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	319
EcoICRI	GAGCTC	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	321
FaiI	YATR	1 cut(s)	193
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FaqI	GGGAC	1 cut(s)	271
FauI	CCCGC	2 cut(s)	269, 382
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	2 cut(s)	126, 450
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	230
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	7 cut(s)	30, 188, 234, 246, 252, 419, 451
HhaI	GCGC	1 cut(s)	432
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HinfI	GANTC	3 cut(s)	33, 77, 96
HpaII	CCGG	7 cut(s)	30, 188, 234, 246, 252, 419, 451
HphI	GGTGA	5 cut(s)	76, 177, 210, 335, 358
Hpy166II	GTNNAC	3 cut(s)	84, 218, 282
Hpy188I	TCNGA	3 cut(s)	76, 101, 147
Hpy8I	GTNNAC	3 cut(s)	84, 218, 282
HpyAV	CCTTC	3 cut(s)	250, 317, 350
HpyCH4III	ACNGT	1 cut(s)	411
HpyCH4IV	ACGT	2 cut(s)	203, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 261
HpySE526I	ACGT	2 cut(s)	203, 284
HspAI	GCGC	1 cut(s)	430
Kzo9I	GATC	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	8 cut(s)	43, 201, 247, 259, 265, 359, 363, 432
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	2 cut(s)	203, 284
MalI	GATC	1 cut(s)	250
MboI	GATC	1 cut(s)	248
MboII	GAAGA	1 cut(s)	286
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	3 cut(s)	117, 326, 398
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	71, 90
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	8 cut(s)	56, 68, 95, 144, 147, 153, 171, 400
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	2 cut(s)	206, 329
MslI	CAYNNNNRTG	1 cut(s)	190
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	7 cut(s)	30, 188, 234, 246, 252, 419, 451
MspR9I	CCNGG	3 cut(s)	234, 420, 451
MvnI	CGCG	3 cut(s)	16, 25, 430
MwoI	GCNNNNNNNGC	2 cut(s)	22, 261
NciI	CCSGG	3 cut(s)	234, 420, 451
NdeII	GATC	1 cut(s)	248
NlaIV	GGNNCC	3 cut(s)	44, 238, 250
PaqCI	CACCTGC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	33
PinAI	ACCGGT	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	2 cut(s)	71, 90
PpsI	GAGTC	2 cut(s)	71, 90
Psp124BI	GAGCTC	1 cut(s)	321
PspN4I	GGNNCC	3 cut(s)	44, 238, 250
PspPI	GGNCC	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	206, 329
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	1 cut(s)	248
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	2 cut(s)	71, 90
ScrFI	CCNGG	3 cut(s)	234, 420, 451
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	8 cut(s)	155, 206, 242, 287, 321, 337, 348, 361
SfaNI	GCATC	1 cut(s)	55
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	3 cut(s)	117, 326, 398
SsiI	CCGC	4 cut(s)	16, 276, 375, 454
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	232, 418, 449
TaaI	ACNGT	1 cut(s)	411
TaiI	ACGT	2 cut(s)	206, 287
TaqI	TCGA	3 cut(s)	5, 310, 446
TaqII	GACCGA	1 cut(s)	139
TasI	AATT	3 cut(s)	117, 326, 398
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	2 cut(s)	206, 329
Tru9I	TTAA	2 cut(s)	206, 329
TseI	GCWGC	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.