Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001813

Physical Location & Seq

Genomic Coordinates Forward (+)

3313075 .. 3317106

Gene Structure 4032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0027400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCGTATTCGATATCATCAATATGCAATCTAGGGAAACCTCACTCCCAACCTCAGCGAAACCTCACTCCCAACCTCTGCACCGCCACTGAAACCCTCCTCAACGACGCCGGAGACCTCTCGGTATGGATTGGCAATGGCGGTGAAGCGAGGGCTCTACCGGAACCGAGCCGCCGGATCTCATTCCCTATTATTTGGTTGATTTTCTTCGTCGGCCGTGGCCTCTACAGCTCCGTTGAGCTGGGTATCTCAGAGGTGAAACCTAGAAAGATATCACTTTTAGTCATGCAGTTCTCTGAGAGGGATGGATGCAGTTTGGATGCTACCTCCCTTGATAAATCTAACCCATTTCTTGCTCGTGTATTTCTTGAAGCTTGGAAAAGTCAGCTTCTGCAAATAATTGACGAGAGCACCAAAGGATCTTGTTCTCATTATTTTAATGAGATGATCTCTATTAGAACTTTGTCAAGAAATGAGGACCCACAATTGGAAGAAGATAAACTACTTGGCACAGGTATACCAGAAGGTCTAAATGTGGACACTCCTCCTCAGTACAGAAATGCATATCAACCTATCCCAAGGCTTGGTTCGCTTTATCTTCGTTTTGGGCTAGCTGAAAATGCCTCCCACCACCTCTCATTTCCTGGACAAAGGCCAGAACAGTCTGAGTTGCAGAAGTTGAAGTCACTGGAGAAGCATCTGAAACAATGTTCAGATGCCCGTAAGCTTGGTGATTGGAAGAATGTGCTAAGGGAATCGGATGCAGCCATAGAAATGGGAGTGGAATCCTCCCCTCAGAAATATGATGCTGACCCAGTGGCAAAGGCAGCTGCTGCAACTGTCCTGGGCATCCAAGTTGGGTGTGGATTGCATTTAGGAGATGAATCTAGAGCTAATGTTGCACAAGATAATGAACCTGTCCATCAGACTCCTCAAGCGTATGCTGCACAAGATGGAAATTGGATTGCTCGTATTGCAGCATCACTTGTGGGTGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yos1

Protein Analysis

333

Amino Acids

36.61

Weight (kDa)

5.48

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37975 AT2G37975 AT3G54085 AT3G54085 AT3G54085
fragaria_vesca	FvH4_6g12280 FvH4_6g12280 FvH4_6g12280 FvH4_6g12280 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790
malus_domestica	MD04G1144200.v1.1 MD12G1158300.v1.1
prunus_persica	Prupe.2G244600_v2.0.a1 Prupe.2G244600_v2.0.a1 Prupe.2G244600_v2.0.a1 Prupe.6G268600_v2.0.a1 Prupe.6G268700_v2.0.a1
pyrus_communis	pycom01g16480 pycom04g13070 pycom12g15030
rosa_chinensis	RchiOBHm_Chr1g0369131 RchiOBHm_Chr3g0464081 RchiOBHm_Chr6g0266781
rosa_laevigata	RLG00000001475 RLG00000002225 RLG00000008995 RLG00000014079
rosa_multiflora	Rmu_sc0012140.1_g000012
rosa_roxburghii	Rroxscaffold_7G00162500 Rroxscaffold_7G00201440
rosa_rugosa	Rorug01G0348200 Rorug03G0070700 Rorug06G0027400
rosa_samantha	Rh3BG131800 Rh5CG489100 Rh6BG148500 Rh6CG144200 Rh6DG133100
rosa_wichuraiana	Rw1G031340 Rw3G010780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	517
AciI	CCGC	3 cut(s)	84, 141, 172
AclWI	GGATC	2 cut(s)	185, 427
AcoI	YGGCCR	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	2 cut(s)	487, 584
AgsI	TTSAA	2 cut(s)	371, 682
AjnI	CCWGG	2 cut(s)	643, 843
AjuI	GAANNNNNNNTTGG	2 cut(s)	571, 603
AluBI	AGCT	8 cut(s)	231, 241, 374, 388, 614, 727, 830, 893
AluI	AGCT	8 cut(s)	231, 241, 374, 388, 614, 727, 830, 893
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	2 cut(s)	185, 427
AlwNI	CAGNNNCTG	2 cut(s)	391, 833
AoxI	GGCC	3 cut(s)	214, 220, 653
ApeKI	GCWGC	6 cut(s)	764, 827, 830, 833, 944, 977
AspS9I	GGNCC	1 cut(s)	478
AsuHPI	GGTGA	3 cut(s)	155, 268, 743
AsuNHI	GCTAGC	1 cut(s)	610
AvaII	GGWCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	157
BarI	GAAGNNNNNNTAC	2 cut(s)	486, 518
BauI	CACGAG	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	413
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	6 cut(s)	776, 817, 820, 839, 931, 989
BccI	CCATC	3 cut(s)	299, 930, 947
BceAI	ACGGC	1 cut(s)	201
BciT130I	CCWGG	2 cut(s)	645, 845
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	4 cut(s)	32, 264, 611, 888
BfmI	CTRYAG	1 cut(s)	226
BisI	GCNGC	7 cut(s)	172, 765, 828, 831, 834, 945, 978
BlsI	GCNGC	7 cut(s)	173, 766, 829, 832, 835, 946, 979
Bme1390I	CCNGG	2 cut(s)	645, 845
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	2 cut(s)	165, 480
BmrFI	CCNGG	2 cut(s)	645, 845
BmrI	ACTGGG	1 cut(s)	809
BmsI	GCATC	8 cut(s)	299, 310, 706, 706, 751, 796, 858, 989
BmtI	GCTAGC	1 cut(s)	614
BmuI	ACTGGG	1 cut(s)	809
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
BpmI	CTGGAG	1 cut(s)	710
Bpu10I	CCTNAGC	2 cut(s)	54, 749
BpuEI	CTTGAG	1 cut(s)	918
BsaHI	GRCGYC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	108
BsaJI	CCNNGG	3 cut(s)	217, 578, 844
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	2 cut(s)	487, 584
Bse1I	ACTGG	2 cut(s)	693, 815
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	645, 845
BseDI	CCNNGG	3 cut(s)	217, 578, 844
BseGI	GGATG	5 cut(s)	310, 314, 325, 766, 849
BseLI	CCNNNNNNNGG	2 cut(s)	487, 584
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	6 cut(s)	68, 264, 288, 563, 657, 809
BseNI	ACTGG	2 cut(s)	693, 815
BseRI	GAGGAG	4 cut(s)	89, 534, 537, 921
BseX3I	CGGCCG	1 cut(s)	214
BseXI	GCAGC	6 cut(s)	776, 817, 820, 839, 931, 989
BseYI	CCCAGC	1 cut(s)	241
BsgI	GTGCAG	2 cut(s)	64, 930
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	3 cut(s)	216, 222, 655
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	413
BsiSI	CCGG	3 cut(s)	111, 161, 175
BslI	CCNNNNNNNGG	2 cut(s)	487, 584
BsmAI	GTCTC	1 cut(s)	108
BsnI	GGCC	3 cut(s)	216, 222, 655
Bso31I	GGTCTC	1 cut(s)	108
Bsp1286I	GDGCHC	2 cut(s)	157, 413
Bsp143I	GATC	3 cut(s)	177, 419, 447
BspACI	CCGC	3 cut(s)	84, 141, 172
BspANI	GGCC	3 cut(s)	216, 222, 655
BspCNI	CTCAG	6 cut(s)	67, 263, 289, 562, 658, 808
BspLI	GGNNCC	2 cut(s)	165, 480
BspOI	GCTAGC	1 cut(s)	614
BspPI	GGATC	2 cut(s)	185, 427
BspTNI	GGTCTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	693, 815
BssECI	CCNNGG	3 cut(s)	217, 578, 844
BssMI	GATC	3 cut(s)	177, 419, 447
BssNAI	GTATAC	1 cut(s)	518
BssNI	GRCGYC	1 cut(s)	108
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	578
Bst1107I	GTATAC	1 cut(s)	518
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	645, 845
Bst4CI	ACNGT	2 cut(s)	663, 841
BstACI	GRCGYC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	833
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	7 cut(s)	54, 250, 297, 549, 666, 749, 795
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	5 cut(s)	310, 314, 325, 766, 849
BstKTI	GATC	3 cut(s)	180, 422, 450
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	3 cut(s)	177, 419, 447
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	8 cut(s)	228, 589, 620, 827, 833, 899, 944, 974
BstNI	CCWGG	2 cut(s)	645, 845
BstSCI	CCNGG	2 cut(s)	643, 843
BstSFI	CTRYAG	1 cut(s)	226
BstV1I	GCAGC	6 cut(s)	776, 817, 820, 839, 931, 989
BstX2I	RGATCY	2 cut(s)	177, 419
BstXI	CCANNNNNNTGG	1 cut(s)	775
BstYI	RGATCY	2 cut(s)	177, 419
BstZ17I	GTATAC	1 cut(s)	518
BstZI	CGGCCG	1 cut(s)	214
BsuRI	GGCC	3 cut(s)	216, 222, 655
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	5 cut(s)	310, 314, 325, 766, 849
BtsIMutI	CAGTG	3 cut(s)	87, 686, 822
Cac8I	GCNNGC	1 cut(s)	612
CaiI	CAGNNNCTG	2 cut(s)	391, 833
Cfr13I	GGNCC	1 cut(s)	478
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	1 cut(s)	286
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	7 cut(s)	54, 250, 297, 549, 666, 749, 795
DpnI	GATC	3 cut(s)	179, 421, 449
DpnII	GATC	3 cut(s)	177, 419, 447
EaeI	YGGCCR	1 cut(s)	214
EagI	CGGCCG	1 cut(s)	214
EclXI	CGGCCG	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	108
Eco32I	GATATC	2 cut(s)	15, 273
Eco47I	GGWCC	1 cut(s)	478
Eco52I	CGGCCG	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	478
EcoRII	CCWGG	2 cut(s)	643, 843
EcoRV	GATATC	2 cut(s)	15, 273
EcoT14I	CCWWGG	1 cut(s)	578
EcoT22I	ATGCAT	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	1 cut(s)	289
FaiI	YATR	8 cut(s)	25, 127, 287, 518, 565, 770, 804, 942
FatI	CATG	1 cut(s)	285
FblI	GTMKAC	1 cut(s)	517
Fnu4HI	GCNGC	7 cut(s)	172, 765, 828, 831, 834, 945, 978
FokI	GGATG	5 cut(s)	317, 321, 332, 773, 836
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	7 cut(s)	172, 765, 828, 831, 834, 945, 978
FspBI	CTAG	4 cut(s)	32, 264, 611, 888
GluI	GCNGC	7 cut(s)	172, 765, 828, 831, 834, 945, 978
GsaI	CCCAGC	1 cut(s)	245
GsuI	CTGGAG	1 cut(s)	710
HaeIII	GGCC	3 cut(s)	216, 222, 655
HapII	CCGG	3 cut(s)	111, 161, 175
HgaI	GACGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	289
HindIII	AAGCTT	2 cut(s)	372, 725
HinfI	GANTC	4 cut(s)	755, 785, 884, 928
HpaII	CCGG	3 cut(s)	111, 161, 175
HphI	GGTGA	3 cut(s)	155, 268, 743
Hpy166II	GTNNAC	2 cut(s)	518, 538
Hpy188I	TCNGA	8 cut(s)	253, 298, 667, 702, 715, 760, 798, 927
Hpy188III	TCNNGA	3 cut(s)	368, 468, 888
Hpy8I	GTNNAC	2 cut(s)	518, 538
Hpy99I	CGWCG	2 cut(s)	110, 215
HpyAV	CCTTC	1 cut(s)	518
HpyCH4III	ACNGT	2 cut(s)	663, 841
HpyF10VI	GCNNNNNNNGC	8 cut(s)	228, 589, 620, 827, 833, 899, 944, 974
HpyF3I	CTNAG	7 cut(s)	54, 250, 297, 549, 666, 749, 795
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	177, 419, 447
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	6 cut(s)	776, 817, 820, 839, 931, 989
LweI	GCATC	8 cut(s)	299, 310, 706, 706, 751, 796, 858, 989
MaeI	CTAG	4 cut(s)	32, 264, 611, 888
MaeIII	GTNAC	1 cut(s)	684
MalI	GATC	3 cut(s)	179, 421, 449
MboI	GATC	3 cut(s)	177, 419, 447
MboII	GAAGA	5 cut(s)	199, 503, 506, 590, 751
MfeI	CAATTG	1 cut(s)	485
MflI	RGATCY	2 cut(s)	177, 419
MhlI	GDGCHC	2 cut(s)	157, 413
MluCI	AATT	3 cut(s)	399, 485, 958
MlyI	GAGTC	1 cut(s)	922
Mph1103I	ATGCAT	1 cut(s)	565
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	2 cut(s)	22, 773
MspA1I	CMGCKG	1 cut(s)	830
MspI	CCGG	3 cut(s)	111, 161, 175
MspR9I	CCNGG	2 cut(s)	645, 845
MunI	CAATTG	1 cut(s)	485
MvaI	CCWGG	2 cut(s)	645, 845
MwoI	GCNNNNNNNGC	8 cut(s)	228, 589, 620, 827, 833, 899, 944, 974
NdeII	GATC	3 cut(s)	177, 419, 447
NheI	GCTAGC	1 cut(s)	610
NlaIII	CATG	1 cut(s)	289
NlaIV	GGNNCC	2 cut(s)	165, 480
NmuCI	GTSAC	1 cut(s)	684
NsiI	ATGCAT	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	755, 785, 884
PflMI	CCANNNNNTGG	1 cut(s)	584
PfoI	TCCNGGA	1 cut(s)	643
PkrI	GCNGC	7 cut(s)	173, 766, 829, 832, 835, 946, 979
PleI	GAGTC	1 cut(s)	922
PpsI	GAGTC	1 cut(s)	922
PpuMI	RGGWCCY	1 cut(s)	478
Psp5II	RGGWCCY	1 cut(s)	478
Psp6I	CCWGG	2 cut(s)	643, 843
PspFI	CCCAGC	1 cut(s)	241
PspGI	CCWGG	2 cut(s)	643, 843
PspN4I	GGNNCC	2 cut(s)	165, 480
PspPI	GGNCC	1 cut(s)	478
PspPPI	RGGWCCY	1 cut(s)	478
PstNI	CAGNNNCTG	2 cut(s)	391, 833
PsuI	RGATCY	2 cut(s)	177, 419
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
RseI	CAYNNNNRTG	2 cut(s)	22, 773
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	7 cut(s)	172, 765, 828, 831, 834, 945, 978
Sau3AI	GATC	3 cut(s)	177, 419, 447
Sau96I	GGNCC	1 cut(s)	478
SchI	GAGTC	1 cut(s)	922
ScrFI	CCNGG	2 cut(s)	645, 845
SduI	GDGCHC	2 cut(s)	157, 413
SfaNI	GCATC	8 cut(s)	299, 310, 706, 706, 751, 796, 858, 989
SfcI	CTRYAG	1 cut(s)	226
SinI	GGWCC	1 cut(s)	478
SmiMI	CAYNNNNRTG	2 cut(s)	22, 773
SmlI	CTYRAG	1 cut(s)	933
SmoI	CTYRAG	1 cut(s)	933
Sse9I	AATT	3 cut(s)	399, 485, 958
SsiI	CCGC	3 cut(s)	84, 141, 172
SspMI	CTAG	4 cut(s)	32, 264, 611, 888
StyD4I	CCNGG	2 cut(s)	643, 843
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	2 cut(s)	663, 841
TaqI	TCGA	1 cut(s)	11
TasI	AATT	3 cut(s)	399, 485, 958
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	3 cut(s)	755, 785, 884
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	3 cut(s)	94, 693, 822
TseFI	GTSAC	1 cut(s)	684
TseI	GCWGC	6 cut(s)	764, 827, 830, 833, 944, 977
Tsp45I	GTSAC	1 cut(s)	684
TspDTI	ATGAA	2 cut(s)	897, 927
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	3 cut(s)	94, 693, 822
Van91I	CCANNNNNTGG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	478
XbaI	TCTAGA	1 cut(s)	887
XcmI	CCANNNNNNNNNTGG	1 cut(s)	860
XmiI	GTMKAC	1 cut(s)	517
XspI	CTAG	4 cut(s)	32, 264, 611, 888
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.