RchiOBHm_Chr1g0369131

Immediate early response 3-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001813
Physical Location & Seq
Reverse (-)
59033405 .. 59036040
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59338

Sequence Viewer

Length: 234 bp
ATGGGTTTGTGGACGCTACTTGAAGGCTTCCTGCTTCTTGCAAATGCTCTAGCAATATTAAATGAGGACCGGTTCCTTGCGCCTAGGGGATGGAGCTTCTCAGAATTCTCTGTGGGCAGGACAAAGTCATTGAAGGGACAGATTATAGGTCTCATTTATGCAACACAGTACCTGAGAGTTCCTCTTGTGCTACTCAATTCCATCTGCATTGTTGTAAAATTGATATCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yos1

Protein Analysis

77

Amino Acids

8.52

Weight (kDa)

9.51

Isoelectric Point (pI)

19.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yos1 PF08571 3 - 77 8.1e-26 Yos1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 1 cut(s) 170
AgeI ACCGGT 1 cut(s) 69
AgsI TTSAA 2 cut(s) 23, 133
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 155
AlwNI CAGNNNCTG 1 cut(s) 172
ApoI RAATTY 1 cut(s) 104
AsiGI ACCGGT 1 cut(s) 69
AspA2I CCTAGG 1 cut(s) 83
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 67
AvaII GGWCC 1 cut(s) 67
AvrII CCTAGG 1 cut(s) 83
BccI CCATC 2 cut(s) 84, 209
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 2 cut(s) 50, 84
BlnI CCTAGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 74
BplI GAGNNNNNCTC 2 cut(s) 166, 198
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 69
Bse118I RCCGGY 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 95
BseMII CTCAG 2 cut(s) 114, 164
BshTI ACCGGT 1 cut(s) 69
BsiSI CCGG 1 cut(s) 70
BslFI GGGAC 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 155
BspCNI CTCAG 2 cut(s) 113, 165
BspLI GGNNCC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 69
BssAI RCCGGY 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 100, 173
BstF5I GGATG 1 cut(s) 95
BstHHI GCGC 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 95
CaiI CAGNNNCTG 1 cut(s) 172
CfoI GCGC 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 67
CseI GACGC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 169
CspAI ACCGGT 1 cut(s) 69
CviJI RGCY 2 cut(s) 27, 96
CviKI_1 RGCY 2 cut(s) 27, 96
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 100, 173
Eco130I CCWWGG 1 cut(s) 83
Eco31I GGTCTC 1 cut(s) 155
Eco32I GATATC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 104
EcoRV GATATC 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaiI YATR 2 cut(s) 146, 159
FaqI GGGAC 1 cut(s) 150
FokI GGATG 1 cut(s) 102
FspBI CTAG 2 cut(s) 50, 84
GlaI GCGC 1 cut(s) 81
HapII CCGG 1 cut(s) 70
HgaI GACGC 1 cut(s) 22
HhaI GCGC 1 cut(s) 82
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HpaII CCGG 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 228
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 17, 127
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4V TGCA 3 cut(s) 41, 161, 207
HpyF3I CTNAG 2 cut(s) 100, 173
HspAI GCGC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 5 cut(s) 44, 83, 103, 185, 213
MaeI CTAG 2 cut(s) 50, 84
MluCI AATT 3 cut(s) 104, 196, 218
MnlI CCTC 2 cut(s) 58, 192
MseI TTAA 1 cut(s) 59
MspI CCGG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 74
PflFI GACNNNGTC 1 cut(s) 124
PinAI ACCGGT 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 74
PspPI GGNCC 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 172
PsyI GACNNNGTC 1 cut(s) 124
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 59
Sau96I GGNCC 1 cut(s) 67
SetI ASST 3 cut(s) 98, 151, 174
SinI GGWCC 1 cut(s) 67
Sse9I AATT 3 cut(s) 104, 196, 218
SspI AATATT 1 cut(s) 57
SspMI CTAG 2 cut(s) 50, 84
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 1 cut(s) 168
TasI AATT 3 cut(s) 104, 196, 218
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
Tth111I GACNNNGTC 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 1 cut(s) 104
XmaJI CCTAGG 1 cut(s) 83
XspI CTAG 2 cut(s) 50, 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.