Rroxscaffold_7G00201440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001813
Physical Location & Seq
Forward (+)
49108654 .. 49109371
718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201440.1

Sequence Viewer

Length: 210 bp
ATGGCTGTACTGAATGAGCACCGGTTTCTCGGTCGAATGGGGCTAACTCTGAAAGATGATGAAGCTGGGGATGATGAGAGGAAGAAGCTCATCACTTTCAAGTATTGGGTCACACGGATTTTACAGGCAGCCCGATGGTCGAGGCAAATCCTCATATTGGTGAACGGCATCACTGTTTGCATTCTGTTGTTGATGGGGTACTGGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

8.11

Weight (kDa)

9.43

Isoelectric Point (pI)

29.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yos1 PF08571 1 - 66 2.4e-09 Yos1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 9, 200
AfiI CCNNNNNNNGG 1 cut(s) 157
AgeI ACCGGT 1 cut(s) 21
AgsI TTSAA 1 cut(s) 100
AluBI AGCT 2 cut(s) 65, 88
AluI AGCT 2 cut(s) 65, 88
Alw21I GWGCWC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 128
AsiGI ACCGGT 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 140
BccI CCATC 2 cut(s) 129, 187
BceAI ACGGC 1 cut(s) 181
BfaI CTAG 1 cut(s) 208
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BmsI GCATC 1 cut(s) 177
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 157
BseNI ACTGG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 140
BseYI CCCAGC 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 34
BshTI ACCGGT 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 157
BsmI GAATGC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 21
BsrI ACTGG 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 175
BstF5I GGATG 1 cut(s) 76
BstMCI CGRYCG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 140
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 21
Csp6I GTAC 2 cut(s) 8, 199
CspAI ACCGGT 1 cut(s) 21
CviJI RGCY 6 cut(s) 5, 43, 65, 88, 131, 205
CviKI_1 RGCY 6 cut(s) 5, 43, 65, 88, 131, 205
CviQI GTAC 2 cut(s) 8, 199
FaiI YATR 1 cut(s) 155
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 1 cut(s) 208
GluI GCNGC 1 cut(s) 129
GsaI CCCAGC 1 cut(s) 69
HapII CCGG 1 cut(s) 22
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 51
Hpy8I GTNNAC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 180
LpnPI CCDG 4 cut(s) 35, 51, 110, 187
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 177
MaeI CTAG 1 cut(s) 208
MaeIII GTNAC 1 cut(s) 109
MboII GAAGA 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 21
MnlI CCTC 3 cut(s) 72, 135, 161
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 1 cut(s) 22
Mva1269I GAATGC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 109
PctI GAATGC 1 cut(s) 180
PinAI ACCGGT 1 cut(s) 21
PkrI GCNGC 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 65
RsaI GTAC 2 cut(s) 9, 200
RsaNI GTAC 2 cut(s) 8, 199
RseI CAYNNNNRTG 1 cut(s) 158
SatI GCNGC 1 cut(s) 129
SduI GDGCHC 1 cut(s) 21
SetI ASST 2 cut(s) 67, 90
SfaNI GCATC 1 cut(s) 177
SgeI CNNG 8 cut(s) 34, 41, 78, 112, 126, 137, 144, 153
SmiMI CAYNNNNRTG 1 cut(s) 158
SspMI CTAG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 34, 140
TaqII GACCGA 1 cut(s) 20
TatI WGTACW 1 cut(s) 7
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 1 cut(s) 178
XspI CTAG 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.