Rh6CG144200

Protein transport protein yos1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001813
Physical Location & Seq
Reverse (-)
18786405 .. 18788014
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG144200.1

Sequence Viewer

Length: 393 bp
ATGGAAATTCAGCTCACAGAGTCATTAAGAGTGAAACAAAGAACTTGTGCACTTTTCTGTCATTTCATCGCTCGCAGATCTGAAATTATGCTTCTCGGTTTTGGCTTTGGTTTTGCTTCGGTGTTTTGGAATGCCTTTTGGACTTTGTTTCGTGGATTTGTGGCTGGACTGCTATTTTGCAATGCCATGGCTGTACTGAATGAGCACAGGTTTCTAGGTCGAATGGGGCTAACTCTGAAAGATGATGGAGCTGGGGATGAGAGGAAGAAGCTCATCACTTTCAAGTATTGGGTCACACGGATTTTACAGGCAGCCCGATGGTCGAGGCAAATCCTCATATTGGTGAACGGCATCATTATTTGCATTCTGTTGTTGCTTGGGTACTGGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yos1

Protein Analysis

130

Amino Acids

15.08

Weight (kDa)

9.95

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yos1 PF08571 54 - 127 1.3e-13 Yos1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 6
AfaI GTAC 2 cut(s) 195, 383
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 1 cut(s) 283
AluBI AGCT 3 cut(s) 13, 251, 271
AluI AGCT 3 cut(s) 13, 251, 271
Alw21I GWGCWC 2 cut(s) 52, 207
Alw44I GTGCAC 1 cut(s) 48
ApaLI GTGCAC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 6
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AsuHPI GGTGA 1 cut(s) 355
BaeGI GKGCMC 1 cut(s) 52
Bbv12I GWGCWC 2 cut(s) 52, 207
BbvI GCAGC 1 cut(s) 323
BccI CCATC 2 cut(s) 239, 312
BceAI ACGGC 1 cut(s) 364
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 389
BglII AGATCT 1 cut(s) 77
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
BmsI GCATC 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMI GCAATG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 389
BseSI GKGCMC 1 cut(s) 52
BseXI GCAGC 1 cut(s) 323
BseYI CCCAGC 1 cut(s) 251
BsiHKAI GWGCWC 2 cut(s) 52, 207
BslI CCNNNNNNNGG 1 cut(s) 340
BsmI GAATGC 2 cut(s) 136, 363
Bsp1286I GDGCHC 2 cut(s) 52, 207
Bsp143I GATC 1 cut(s) 77
Bsp19I CCATGG 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 187
BsrI ACTGG 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 73
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 1 cut(s) 80
BstMBI GATC 1 cut(s) 77
BstSFI CTRYAG 1 cut(s) 389
BstSLI GKGCMC 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 52
BtsCI GGATG 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 73
Csp6I GTAC 2 cut(s) 194, 382
CviAII CATG 1 cut(s) 187
CviJI RGCY 9 cut(s) 13, 105, 164, 191, 229, 251, 271, 314, 388
CviKI_1 RGCY 9 cut(s) 13, 105, 164, 191, 229, 251, 271, 314, 388
CviQI GTAC 2 cut(s) 194, 382
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 190
FaiI YATR 3 cut(s) 89, 188, 338
FatI CATG 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 215
GluI GCNGC 1 cut(s) 312
GsaI CCCAGC 1 cut(s) 255
Hin1II CATG 1 cut(s) 190
HinfI GANTC 1 cut(s) 20
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 2 cut(s) 50, 346
Hpy188I TCNGA 2 cut(s) 82, 237
Hpy8I GTNNAC 2 cut(s) 50, 346
HpyCH4V TGCA 3 cut(s) 50, 180, 363
Hsp92II CATG 1 cut(s) 190
Kzo9I GATC 1 cut(s) 77
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 5 cut(s) 150, 193, 237, 293, 370
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 1 cut(s) 360
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 292
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 1 cut(s) 277
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 2 cut(s) 52, 207
MluCI AATT 2 cut(s) 6, 84
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 3 cut(s) 255, 318, 344
MseI TTAA 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 341
Mva1269I GAATGC 2 cut(s) 136, 363
NcoI CCATGG 1 cut(s) 186
NdeII GATC 1 cut(s) 77
NlaIII CATG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 292
PctI GAATGC 2 cut(s) 136, 363
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 251
PsuI RGATCY 1 cut(s) 77
RsaI GTAC 2 cut(s) 195, 383
RsaNI GTAC 2 cut(s) 194, 382
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 1 cut(s) 77
SchI GAGTC 1 cut(s) 29
SduI GDGCHC 2 cut(s) 52, 207
SetI ASST 5 cut(s) 15, 212, 220, 253, 273
SfaNI GCATC 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 341
Sse9I AATT 2 cut(s) 6, 84
SspMI CTAG 1 cut(s) 215
StyI CCWWGG 1 cut(s) 186
TaqI TCGA 2 cut(s) 220, 323
TasI AATT 2 cut(s) 6, 84
TatI WGTACW 1 cut(s) 193
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 55
TspGWI ACGGA 1 cut(s) 313
VneI GTGCAC 1 cut(s) 48
XapI RAATTY 1 cut(s) 6
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.