Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001813

Physical Location & Seq

Genomic Coordinates Reverse (-)

68237892 .. 68238122

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG489100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGCTTCCATGGCCTCCTCCTACATGCAGCAGCATGATTCGAGTCCGGGTCCCAGGCCAAGACTCAATTTTTTCCCCTACTGCGGCGCTAGATTCATCGAGGATATCCAGACCCTGATCCAATCTCCTCATAGCCATCCAATTTCTGGCCAACGCGATGTTCCTGGACAATTCATTGATATCGCAGAGCCCAAGGCTGTGGTGGAGCAAGAGGAGCATGCTAATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

76

Amino Acids

8.51

Weight (kDa)

5.34

Isoelectric Point (pI)

71.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37975 AT2G37975 AT3G54085 AT3G54085 AT3G54085
fragaria_vesca	FvH4_6g12280 FvH4_6g12280 FvH4_6g12280 FvH4_6g12280 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790
malus_domestica	MD04G1144200.v1.1 MD12G1158300.v1.1
prunus_persica	Prupe.2G244600_v2.0.a1 Prupe.2G244600_v2.0.a1 Prupe.2G244600_v2.0.a1 Prupe.6G268600_v2.0.a1 Prupe.6G268700_v2.0.a1
pyrus_communis	pycom01g16480 pycom04g13070 pycom12g15030
rosa_chinensis	RchiOBHm_Chr1g0369131 RchiOBHm_Chr3g0464081 RchiOBHm_Chr6g0266781
rosa_laevigata	RLG00000001475 RLG00000002225 RLG00000008995 RLG00000014079
rosa_multiflora	Rmu_sc0012140.1_g000012
rosa_roxburghii	Rroxscaffold_7G00162500 Rroxscaffold_7G00201440
rosa_rugosa	Rorug01G0348200 Rorug03G0070700 Rorug06G0027400
rosa_samantha	Rh3BG131800 Rh5CG489100 Rh6BG148500 Rh6CG144200 Rh6DG133100
rosa_wichuraiana	Rw1G031340 Rw3G010780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccII	CGCG	1 cut(s)	156
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	148
AfiI	CCNNNNNNNGG	2 cut(s)	83, 146
AjnI	CCWGG	2 cut(s)	53, 163
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AlwI	GGATC	1 cut(s)	112
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	3 cut(s)	12, 56, 148
ApeKI	GCWGC	2 cut(s)	28, 31
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	40, 43
BccI	CCATC	1 cut(s)	144
BciT130I	CCWGG	2 cut(s)	55, 165
BcnI	CCSGG	1 cut(s)	48
BfaI	CTAG	2 cut(s)	90, 229
BfoI	RGCGCY	1 cut(s)	90
BisI	GCNGC	3 cut(s)	29, 32, 85
BlsI	GCNGC	3 cut(s)	30, 33, 86
Bme1390I	CCNGG	3 cut(s)	48, 55, 165
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	2 cut(s)	51, 52
BmrFI	CCNGG	3 cut(s)	48, 55, 165
BpuMI	CCSGG	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	9, 53, 192
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 146
BseBI	CCWGG	2 cut(s)	55, 165
BseDI	CCNNGG	3 cut(s)	9, 53, 192
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	2 cut(s)	83, 146
BseRI	GAGGAG	3 cut(s)	7, 117, 227
BseXI	GCAGC	2 cut(s)	40, 43
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	14, 58, 150
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	83, 146
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	3 cut(s)	14, 58, 150
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	117
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	3 cut(s)	14, 58, 150
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	51, 52
BspPI	GGATC	1 cut(s)	112
BssECI	CCNNGG	3 cut(s)	9, 53, 192
BssMI	GATC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	9, 192
Bst2UI	CCWGG	2 cut(s)	55, 165
BstC8I	GCNNGC	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	136
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 214
BstNI	CCWGG	2 cut(s)	55, 165
BstNSI	RCATGY	2 cut(s)	28, 221
BstSCI	CCNGG	3 cut(s)	46, 53, 163
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	40, 43
BstXI	CCANNNNNNTGG	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	14, 58, 150
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	50
CviAII	CATG	4 cut(s)	10, 25, 35, 218
CviJI	RGCY	7 cut(s)	5, 14, 58, 135, 150, 190, 197
CviKI_1	RGCY	7 cut(s)	5, 14, 58, 135, 150, 190, 197
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	9, 192
Eco24I	GRGCYC	1 cut(s)	192
Eco32I	GATATC	2 cut(s)	106, 181
Eco47I	GGWCC	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	53, 163
EcoRV	GATATC	2 cut(s)	106, 181
EcoT14I	CCWWGG	2 cut(s)	9, 192
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	2 cut(s)	9, 192
FaeI	CATG	4 cut(s)	13, 28, 38, 221
FaiI	YATR	5 cut(s)	11, 26, 36, 132, 219
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	4 cut(s)	9, 24, 34, 217
Fnu4HI	GCNGC	3 cut(s)	29, 32, 85
FokI	GGATG	1 cut(s)	123
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	3 cut(s)	29, 32, 85
FspBI	CTAG	2 cut(s)	90, 229
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	3 cut(s)	29, 32, 85
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	3 cut(s)	14, 58, 150
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	4 cut(s)	13, 28, 38, 221
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	4 cut(s)	38, 43, 63, 93
HpaII	CCGG	1 cut(s)	47
Hpy188III	TCNNGA	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 214
Hsp92II	CATG	4 cut(s)	13, 28, 38, 221
HspAI	GCGC	1 cut(s)	87
KflI	GGGWCCC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	205, 214
LpnPI	CCDG	8 cut(s)	40, 60, 67, 122, 128, 132, 150, 177
Lsp1109I	GCAGC	2 cut(s)	40, 43
MaeI	CTAG	2 cut(s)	90, 229
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	3 cut(s)	67, 141, 170
MluNI	TGGCCA	1 cut(s)	150
MlyI	GAGTC	2 cut(s)	52, 57
MnlI	CCTC	5 cut(s)	25, 28, 94, 138, 205
Mox20I	TGGCCA	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	150
Msp20I	TGGCCA	1 cut(s)	150
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	3 cut(s)	48, 55, 165
MvaI	CCWGG	2 cut(s)	55, 165
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	11, 214
NciI	CCSGG	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	4 cut(s)	13, 28, 38, 221
NlaIV	GGNNCC	2 cut(s)	51, 52
NspI	RCATGY	2 cut(s)	28, 221
PaeI	GCATGC	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	38, 93
PflMI	CCANNNNNTGG	1 cut(s)	146
PfoI	TCCNGGA	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	30, 33, 86
PleI	GAGTC	2 cut(s)	51, 57
PpsI	GAGTC	2 cut(s)	51, 57
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	53, 163
PspGI	CCWGG	2 cut(s)	53, 163
PspN4I	GGNNCC	2 cut(s)	51, 52
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PstNI	CAGNNNCTG	1 cut(s)	115
SatI	GCNGC	3 cut(s)	29, 32, 85
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	2 cut(s)	52, 57
ScrFI	CCNGG	3 cut(s)	48, 55, 165
SduI	GDGCHC	1 cut(s)	192
SinI	GGWCC	1 cut(s)	50
SphI	GCATGC	1 cut(s)	221
Sse9I	AATT	3 cut(s)	67, 141, 170
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	2 cut(s)	90, 229
StyD4I	CCNGG	3 cut(s)	46, 53, 163
StyI	CCWWGG	2 cut(s)	9, 192
TaqI	TCGA	2 cut(s)	41, 99
TasI	AATT	3 cut(s)	67, 141, 170
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	38, 93
TseI	GCWGC	2 cut(s)	28, 31
TspDTI	ATGAA	2 cut(s)	85, 163
Van91I	CCANNNNNTGG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	50
XceI	RCATGY	2 cut(s)	28, 221
XcmI	CCANNNNNNNNNTGG	2 cut(s)	143, 199
XspI	CTAG	2 cut(s)	90, 229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.