pycom01g16480

Immediate early response 3-interacting protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0001813
Physical Location & Seq
Reverse (-)
16052751 .. 16052984
234 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g16480.1

Sequence Viewer

Length: 234 bp
ATGGGTCTGGGTACACTACTTGAAGGCTTTCTGCTTCTTGCAAATGCACTGGCGATTTTAAATGAAGACCGCTTCCTTGCGCCTAGGGGATGGAGCCTCTCAGAATTCTCAGGGGGCAGGACGAAATCAGTCAAGGGACAGATTATAGGTCTCATCTACGCAACACAATACTTGAGAGTTCCTCTTGTGCTACTCAATACTGTCTGCATCGTTCTAAAATTGATATCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yos1

Protein Analysis

78

Amino Acids

8.32

Weight (kDa)

9.51

Isoelectric Point (pI)

19.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yos1 PF08571 3 - 77 7.7e-26 Yos1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 70
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 27
AspA2I CCTAGG 1 cut(s) 83
AspLEI GCGC 1 cut(s) 82
AvrII CCTAGG 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 72
BccI CCATC 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 84
BlnI CCTAGG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 95
BmsI GCATC 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 166, 198
BpuEI CTTGAG 1 cut(s) 193
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 95
BseMII CTCAG 2 cut(s) 114, 123
BseNI ACTGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 155
BspACI CCGC 1 cut(s) 70
BspCNI CTCAG 2 cut(s) 113, 122
BspLI GGNNCC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 155
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 202
BstDEI CTNAG 2 cut(s) 100, 109
BstF5I GGATG 1 cut(s) 95
BstHHI GCGC 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 72
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 47
CfoI GCGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 12
CviJI RGCY 2 cut(s) 27, 96
CviKI_1 RGCY 2 cut(s) 27, 96
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 100, 109
DraI TTTAAA 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 83
Eco31I GGTCTC 1 cut(s) 155
Eco32I GATATC 1 cut(s) 225
EcoRI GAATTC 1 cut(s) 104
EcoRV GATATC 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaiI YATR 1 cut(s) 146
FaqI GGGAC 1 cut(s) 150
FokI GGATG 1 cut(s) 102
FspBI CTAG 1 cut(s) 84
GlaI GCGC 1 cut(s) 81
HhaI GCGC 1 cut(s) 82
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 228
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 17
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 3 cut(s) 41, 47, 207
HpyF3I CTNAG 2 cut(s) 100, 109
HspAI GCGC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 4 cut(s) 35, 96, 103, 213
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 84
MboII GAAGA 1 cut(s) 77
MluCI AATT 2 cut(s) 104, 218
MnlI CCTC 2 cut(s) 107, 192
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 95
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 59
SetI ASST 1 cut(s) 151
SfaNI GCATC 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 2 cut(s) 104, 218
SsiI CCGC 1 cut(s) 70
SspMI CTAG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 1 cut(s) 202
TasI AATT 2 cut(s) 104, 218
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 1 cut(s) 54
TspDTI ATGAA 1 cut(s) 78
TspRI CASTG 1 cut(s) 54
XapI RAATTY 1 cut(s) 104
XmaJI CCTAGG 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.