MD04G1144200.v1.1

Protein transport protein yos1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0001813
Physical Location & Seq
Reverse (-)
23322136 .. 23323319
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1144200.v1.1.491

Sequence Viewer

Length: 318 bp
ATGACTTTCGGTCTTTCCTGTTGTTTCGTTTCGGTGTTGTTGAAATCAAGGCGAACGCTTTCGACCGAGAAACGACTTGCTAAAATGGGATTGTGGACTGTATTCCAAGGCTTCTTGCTGCTCGCAAACGCATTCGCCATACTGAACGAAGATCGGTTTTTGGGTCCGAGAGGGTGGACCTTGCTGCAGTTGCAAGGAGGGAGGAGAACTACGCTTAAGGGGCAGATCATAGGATTTATACATGCATGCCAATTCTTCAGATTTCCTCTCATACTTTTGAACCTAGTTACCATTGTAGTGAAGCTCATCTCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yos1

Protein Analysis

106

Amino Acids

11.83

Weight (kDa)

11.27

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yos1 PF08571 31 - 105 2.8e-22 Yos1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 241
AflII CTTAAG 1 cut(s) 215
AgsI TTSAA 2 cut(s) 43, 280
AhdI GACNNNNNGTC 1 cut(s) 9
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
ApeKI GCWGC 2 cut(s) 118, 184
Asp700I GAANNNNTTC 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 164, 177
AsuC2I CCSGG 1 cut(s) 313
AvaII GGWCC 2 cut(s) 164, 177
BbvI GCAGC 2 cut(s) 105, 171
BcnI CCSGG 1 cut(s) 313
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 185
BfrI CTTAAG 1 cut(s) 215
BisI GCNGC 2 cut(s) 119, 185
BlsI GCNGC 2 cut(s) 120, 186
Bme1390I CCNGG 1 cut(s) 313
Bme18I GGWCC 2 cut(s) 164, 177
BmeRI GACNNNNNGTC 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 164, 177
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 313
BpuMI CCSGG 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 105, 171
Bsh1285I CGRYCG 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 66
BsiSI CCGG 1 cut(s) 312
BsmI GAATGC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 151, 225
BspLI GGNNCC 1 cut(s) 165
BspMAI CTGCAG 1 cut(s) 189
BspTI CTTAAG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 2 cut(s) 151, 225
BssT1I CCWWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 100
BstAFI CTTAAG 1 cut(s) 215
BstC8I GCNNGC 2 cut(s) 123, 247
BstKTI GATC 2 cut(s) 154, 228
BstMBI GATC 2 cut(s) 151, 225
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 190, 220
BstNSI RCATGY 2 cut(s) 245, 249
BstSCI CCNGG 1 cut(s) 311
BstSFI CTRYAG 1 cut(s) 185
BstV1I GCAGC 2 cut(s) 105, 171
Cac8I GCNNGC 2 cut(s) 123, 247
Cfr13I GGNCC 2 cut(s) 164, 177
CviAII CATG 2 cut(s) 242, 246
CviJI RGCY 2 cut(s) 111, 304
CviKI_1 RGCY 2 cut(s) 111, 304
DpnI GATC 2 cut(s) 153, 227
DpnII GATC 2 cut(s) 151, 225
DriI GACNNNNNGTC 1 cut(s) 9
Eam1105I GACNNNNNGTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 164, 177
Eco57I CTGAAG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 2 cut(s) 245, 249
FaiI YATR 6 cut(s) 140, 230, 239, 243, 247, 272
FatI CATG 2 cut(s) 241, 245
Fnu4HI GCNGC 2 cut(s) 119, 185
Fsp4HI GCNGC 2 cut(s) 119, 185
FspBI CTAG 1 cut(s) 284
GluI GCNGC 2 cut(s) 119, 185
HapII CCGG 1 cut(s) 312
Hin1II CATG 2 cut(s) 245, 249
HpaII CCGG 1 cut(s) 312
Hpy166II GTNNAC 2 cut(s) 96, 177
Hpy188I TCNGA 2 cut(s) 168, 260
Hpy8I GTNNAC 2 cut(s) 96, 177
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 3 cut(s) 187, 193, 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 220
Hsp92II CATG 2 cut(s) 245, 249
Kzo9I GATC 2 cut(s) 151, 225
LpnPI CCDG 1 cut(s) 31
Lsp1109I GCAGC 2 cut(s) 105, 171
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 153, 227
MboI GATC 2 cut(s) 151, 225
MboII GAAGA 2 cut(s) 161, 247
MluCI AATT 1 cut(s) 251
MnlI CCTC 4 cut(s) 164, 191, 195, 276
Mph1103I ATGCAT 1 cut(s) 247
MroXI GAANNNNTTC 1 cut(s) 58
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 296
MspCI CTTAAG 1 cut(s) 215
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 313
Mva1269I GAATGC 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 190, 220
NciI CCSGG 1 cut(s) 313
NdeII GATC 2 cut(s) 151, 225
NlaIII CATG 2 cut(s) 245, 249
NlaIV GGNNCC 1 cut(s) 165
NsiI ATGCAT 1 cut(s) 247
NspI RCATGY 2 cut(s) 245, 249
PaeI GCATGC 1 cut(s) 249
PctI GAATGC 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 58
PkrI GCNGC 2 cut(s) 120, 186
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 164, 177
PstI CTGCAG 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 2 cut(s) 119, 185
Sau3AI GATC 2 cut(s) 151, 225
Sau96I GGNCC 2 cut(s) 164, 177
ScrFI CCNGG 1 cut(s) 313
SetI ASST 3 cut(s) 182, 285, 306
SfcI CTRYAG 1 cut(s) 185
SinI GGWCC 2 cut(s) 164, 177
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SphI GCATGC 1 cut(s) 249
Sse9I AATT 1 cut(s) 251
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 62
TaqII GACCGA 1 cut(s) 80
TasI AATT 1 cut(s) 251
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TseI GCWGC 2 cut(s) 118, 184
Vha464I CTTAAG 1 cut(s) 215
VpaK11BI GGWCC 2 cut(s) 164, 177
XceI RCATGY 2 cut(s) 245, 249
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 1 cut(s) 284
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.