RchiOBHm_Chr6g0266781

Protein transport protein yos1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001813
Physical Location & Seq
Reverse (-)
23254248 .. 23254693
446 bp
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UTR
Exon/CDS
Intron
PRQ23927

Sequence Viewer

Length: 306 bp
ATGCTTCTCGGTTTTGGCTTTGGTTTTGTTTCGGTGTTTTGGAATGCATTTTGGACTTTGTTTCGTGGATTTGTGGCTGGACTGCTATTTTGCAATGCCATGGCTGTACTGAATGAGCACAGGTTTCTCGGTCGAATGGGGCTAACTCTGAAAGATGATGGAGCTGGGGATGAGAGGAAGAAGCTCATCACTTTCAAGTATTGGGTCACACGGATTTTACAGGCCGCCCGATGGTCGAGGCAAATCCTCATATTGGTGAACGGCATCATTATTTGCATTCTGTTGTTGCTTGGGTACTGGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yos1

Protein Analysis

101

Amino Acids

11.65

Weight (kDa)

10.03

Isoelectric Point (pI)

21.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yos1 PF08571 25 - 98 6e-14 Yos1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 225
AfaI GTAC 2 cut(s) 108, 296
AfiI CCNNNNNNNGG 2 cut(s) 231, 253
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 2 cut(s) 164, 184
AluI AGCT 2 cut(s) 164, 184
Alw21I GWGCWC 1 cut(s) 120
AoxI GGCC 1 cut(s) 222
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AsuHPI GGTGA 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 120
BccI CCATC 2 cut(s) 152, 225
BceAI ACGGC 1 cut(s) 277
BfaI CTAG 1 cut(s) 304
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BmsI GCATC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 253
Bse1I ACTGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 2 cut(s) 231, 253
BseMI GCAATG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 302
BseYI CCCAGC 1 cut(s) 164
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 120
BslI CCNNNNNNNGG 2 cut(s) 231, 253
BsmI GAATGC 2 cut(s) 49, 276
BsnI GGCC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 120
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 1 cut(s) 225
BspANI GGCC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 175
BstMCI CGRYCG 1 cut(s) 133
BsuRI GGCC 1 cut(s) 224
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 175
Csp6I GTAC 2 cut(s) 107, 295
CviAII CATG 1 cut(s) 100
CviJI RGCY 8 cut(s) 18, 77, 104, 142, 164, 184, 224, 301
CviKI_1 RGCY 8 cut(s) 18, 77, 104, 142, 164, 184, 224, 301
CviQI GTAC 2 cut(s) 107, 295
Eco130I CCWWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 99
EcoT22I ATGCAT 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 1 cut(s) 103
FaiI YATR 2 cut(s) 101, 251
FatI CATG 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 1 cut(s) 304
GluI GCNGC 1 cut(s) 225
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 224
Hin1II CATG 1 cut(s) 103
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 150
Hpy8I GTNNAC 1 cut(s) 259
HpyCH4V TGCA 3 cut(s) 47, 93, 276
Hsp92II CATG 1 cut(s) 103
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 5 cut(s) 63, 106, 150, 206, 283
LweI GCATC 1 cut(s) 273
MaeI CTAG 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 205
MboII GAAGA 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 120
MnlI CCTC 3 cut(s) 168, 231, 257
Mph1103I ATGCAT 1 cut(s) 49
MslI CAYNNNNRTG 1 cut(s) 254
Mva1269I GAATGC 2 cut(s) 49, 276
NcoI CCATGG 1 cut(s) 99
NlaIII CATG 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 205
NsiI ATGCAT 1 cut(s) 49
PctI GAATGC 2 cut(s) 49, 276
PkrI GCNGC 1 cut(s) 226
PspFI CCCAGC 1 cut(s) 164
RsaI GTAC 2 cut(s) 108, 296
RsaNI GTAC 2 cut(s) 107, 295
RseI CAYNNNNRTG 1 cut(s) 254
SatI GCNGC 1 cut(s) 225
SduI GDGCHC 1 cut(s) 120
SetI ASST 3 cut(s) 125, 166, 186
SfaNI GCATC 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 254
SsiI CCGC 1 cut(s) 225
SspMI CTAG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 99
TaqI TCGA 2 cut(s) 133, 236
TaqII GACCGA 1 cut(s) 119
TatI WGTACW 1 cut(s) 106
TauI GCSGC 1 cut(s) 227
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspGWI ACGGA 1 cut(s) 226
XspI CTAG 1 cut(s) 304
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.