RLG00000014079

Protein transport protein yos1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001813
Physical Location & Seq
Forward (+)
46766292 .. 46767678
1387 bp
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UTR
Exon/CDS
Intron
RLM00000014079

Sequence Viewer

Length: 417 bp
ATGTTGAAGGCGGTGGAGAGGTTCAAAGTGACGGCGATGTTCTGGCCGAGGATGGAGGCCGTCTCGAGATGGTCTGGTACGGCTGCATTCGATCGGAGATGTTCTGAAATTATGCTGCTCGGTTTTGGCTTTGGTTTTGTTTCGGTGTTATGGAATGCTTTTTGGACTTTGTTTCGTGGATTTGTGGCTGGACTGCTATTTTGCAATGCCATGGCTGTCCTGAATGAGCACAGGTTTCTCGGTCGAATGGGGCTAACTCTGAAAGATGATCAAGCTGGGGATGGGAGGAAGAAGCTCATCACTTTCAAGTATTGGGTCACACGGATTTTACAGGCAGCCCGATGGTCGAGGCAAATCCTCATATTGGTGAACGGCATCACTATTTGCATTCTGTTGTTGCTTGGGTACTGGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yos1

Protein Analysis

139

Amino Acids

15.95

Weight (kDa)

10.42

Isoelectric Point (pI)

29.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yos1 PF08571 62 - 135 1.7e-13 Yos1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 44
AfaI GTAC 2 cut(s) 79, 407
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 3 cut(s) 7, 25, 307
AluBI AGCT 2 cut(s) 275, 295
AluI AGCT 2 cut(s) 275, 295
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 2 cut(s) 44, 57
ApeKI GCWGC 3 cut(s) 83, 115, 335
ArsI GACNNNNNNTTYG 2 cut(s) 183, 215
AsuHPI GGTGA 1 cut(s) 379
AvaI CYCGRG 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 3 cut(s) 70, 102, 347
BccI CCATC 4 cut(s) 46, 63, 275, 336
BceAI ACGGC 4 cut(s) 44, 48, 96, 388
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 1 cut(s) 415
BisI GCNGC 3 cut(s) 84, 116, 336
BlsI GCNGC 3 cut(s) 85, 117, 337
BmeT110I CYCGRG 1 cut(s) 64
BmsI GCATC 1 cut(s) 384
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BsaJI CCNNGG 2 cut(s) 47, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 413
Bse3DI GCAATG 1 cut(s) 211
BseDI CCNNGG 2 cut(s) 47, 210
BseGI GGATG 2 cut(s) 57, 286
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMI GCAATG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 413
BseXI GCAGC 3 cut(s) 70, 102, 347
BseYI CCCAGC 1 cut(s) 275
Bsh1285I CGRYCG 2 cut(s) 94, 244
BshFI GGCC 2 cut(s) 46, 59
BsiEI CGRYCG 2 cut(s) 94, 244
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 67
BsmBI CGTCTC 1 cut(s) 67
BsmI GAATGC 3 cut(s) 86, 160, 387
BsnI GGCC 2 cut(s) 46, 59
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 2 cut(s) 91, 268
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 1 cut(s) 11
BspANI GGCC 2 cut(s) 46, 59
BsrDI GCAATG 1 cut(s) 211
BsrI ACTGG 1 cut(s) 413
BssECI CCNNGG 2 cut(s) 47, 210
BssMI GATC 2 cut(s) 91, 268
BssT1I CCWWGG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 57, 286
BstKTI GATC 2 cut(s) 94, 271
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 2 cut(s) 91, 268
BstMCI CGRYCG 2 cut(s) 94, 244
BstV1I GCAGC 3 cut(s) 70, 102, 347
BsuRI GGCC 2 cut(s) 46, 59
BtgI CCRYGG 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 2 cut(s) 57, 286
Csp6I GTAC 2 cut(s) 78, 406
CviAII CATG 1 cut(s) 211
CviQI GTAC 2 cut(s) 78, 406
DpnI GATC 2 cut(s) 93, 270
DpnII GATC 2 cut(s) 91, 268
EaeI YGGCCR 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 1 cut(s) 214
FaiI YATR 4 cut(s) 113, 151, 212, 362
FatI CATG 1 cut(s) 210
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 84, 116, 336
FokI GGATG 2 cut(s) 64, 293
Fsp4HI GCNGC 3 cut(s) 84, 116, 336
FspBI CTAG 1 cut(s) 415
GluI GCNGC 3 cut(s) 84, 116, 336
GsaI CCCAGC 1 cut(s) 279
HaeIII GGCC 2 cut(s) 46, 59
Hin1II CATG 1 cut(s) 214
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 3 cut(s) 96, 106, 261
Hpy188III TCNNGA 3 cut(s) 64, 66, 220
Hpy8I GTNNAC 1 cut(s) 370
HpyCH4V TGCA 3 cut(s) 86, 204, 387
Hsp92II CATG 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 2 cut(s) 91, 268
LpnPI CCDG 8 cut(s) 28, 60, 174, 217, 233, 261, 317, 394
Lsp1109I GCAGC 3 cut(s) 70, 102, 347
LweI GCATC 1 cut(s) 384
MaeI CTAG 1 cut(s) 415
MaeIII GTNAC 2 cut(s) 28, 316
MalI GATC 2 cut(s) 93, 270
MboI GATC 2 cut(s) 91, 268
MboII GAAGA 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 108
MnlI CCTC 6 cut(s) 12, 42, 49, 279, 342, 368
MslI CAYNNNNRTG 1 cut(s) 365
Mva1269I GAATGC 3 cut(s) 86, 160, 387
NcoI CCATGG 1 cut(s) 210
NdeII GATC 2 cut(s) 91, 268
NlaIII CATG 1 cut(s) 214
NmeAIII GCCGAG 1 cut(s) 72
NmuCI GTSAC 2 cut(s) 28, 316
PaeR7I CTCGAG 1 cut(s) 64
PctI GAATGC 3 cut(s) 86, 160, 387
PkrI GCNGC 3 cut(s) 85, 117, 337
Ple19I CGATCG 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 275
PvuI CGATCG 1 cut(s) 94
RsaI GTAC 2 cut(s) 79, 407
RsaNI GTAC 2 cut(s) 78, 406
RseI CAYNNNNRTG 1 cut(s) 365
SatI GCNGC 3 cut(s) 84, 116, 336
Sau3AI GATC 2 cut(s) 91, 268
SduI GDGCHC 1 cut(s) 231
SetI ASST 4 cut(s) 23, 236, 277, 297
SfaNI GCATC 1 cut(s) 384
Sfr274I CTCGAG 1 cut(s) 64
SlaI CTCGAG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse9I AATT 1 cut(s) 108
SsiI CCGC 1 cut(s) 11
SspMI CTAG 1 cut(s) 415
StyI CCWWGG 1 cut(s) 210
TaqI TCGA 4 cut(s) 65, 90, 244, 347
TaqII GACCGA 1 cut(s) 230
TasI AATT 1 cut(s) 108
TseFI GTSAC 2 cut(s) 28, 316
TseI GCWGC 3 cut(s) 83, 115, 335
Tsp45I GTSAC 2 cut(s) 28, 316
TspGWI ACGGA 1 cut(s) 337
XhoI CTCGAG 1 cut(s) 64
XspI CTAG 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.