MD12G1158300.v1.1

Protein transport protein yos1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0001813
Physical Location & Seq
Reverse (-)
23892005 .. 23893316
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1158300.v1.1.491

Sequence Viewer

Length: 234 bp
ATGGGTCTGTGGACTTTATTCCAAGGCTTCTTGCTGCTTACAAATGCGTTTGCGATACTGAACGAAGATCGTTTTCTGGGTCCGAGAGGCTGGACCTTGCTACAATTTCAAGGAGGGCGGAGAACCACACTTAAGGGGCAGATCATAGGATTTATACACGCATGCCAGTTCTTCAGATTTCCGCTCATAATTTTGAACATCGTAACTATAGTAGTGAAGCTGATCTCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yos1

Protein Analysis

78

Amino Acids

8.75

Weight (kDa)

11.44

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yos1 PF08571 3 - 77 3.3e-24 Yos1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 184
AciI CCGC 2 cut(s) 118, 182
AcuI CTGAAG 1 cut(s) 157
AflII CTTAAG 1 cut(s) 131
AgsI TTSAA 2 cut(s) 110, 196
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 80, 93
AsuC2I CCSGG 1 cut(s) 229
AvaII GGWCC 2 cut(s) 80, 93
BbvI GCAGC 1 cut(s) 21
BcnI CCSGG 1 cut(s) 229
BfmI CTRYAG 1 cut(s) 207
BfrI CTTAAG 1 cut(s) 131
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 2 cut(s) 80, 93
BmgT120I GGNCC 2 cut(s) 80, 93
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 228
Bsp143I GATC 3 cut(s) 67, 141, 222
BspACI CCGC 2 cut(s) 118, 182
BspLI GGNNCC 1 cut(s) 81
BspTI CTTAAG 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 184
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 3 cut(s) 67, 141, 222
BssT1I CCWWGG 1 cut(s) 22
BstAFI CTTAAG 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 163
BstKTI GATC 3 cut(s) 70, 144, 225
BstMBI GATC 3 cut(s) 67, 141, 222
BstNSI RCATGY 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 227
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 80, 93
CviAII CATG 1 cut(s) 162
CviJI RGCY 3 cut(s) 27, 90, 220
CviKI_1 RGCY 3 cut(s) 27, 90, 220
DpnI GATC 3 cut(s) 69, 143, 224
DpnII GATC 3 cut(s) 67, 141, 222
EciI GGCGGA 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 22
Eco47I GGWCC 2 cut(s) 80, 93
Eco57I CTGAAG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 1 cut(s) 165
FaiI YATR 5 cut(s) 146, 155, 163, 188, 209
FatI CATG 1 cut(s) 161
Fnu4HI GCNGC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 35
HapII CCGG 1 cut(s) 228
Hin1II CATG 1 cut(s) 165
HpaII CCGG 1 cut(s) 228
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 84, 176
Hpy8I GTNNAC 1 cut(s) 12
Hsp92II CATG 1 cut(s) 165
Kzo9I GATC 3 cut(s) 67, 141, 222
LpnPI CCDG 3 cut(s) 62, 76, 179
Lsp1109I GCAGC 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 202
MalI GATC 3 cut(s) 69, 143, 224
MbiI CCGCTC 1 cut(s) 184
MboI GATC 3 cut(s) 67, 141, 222
MboII GAAGA 2 cut(s) 77, 163
MluCI AATT 2 cut(s) 104, 189
MnlI CCTC 2 cut(s) 80, 107
MseI TTAA 1 cut(s) 132
MspCI CTTAAG 1 cut(s) 131
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 229
NciI CCSGG 1 cut(s) 229
NdeII GATC 3 cut(s) 67, 141, 222
NlaIII CATG 1 cut(s) 165
NlaIV GGNNCC 1 cut(s) 81
NspI RCATGY 1 cut(s) 165
PaeI GCATGC 1 cut(s) 165
PkrI GCNGC 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 2 cut(s) 80, 93
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 3 cut(s) 67, 141, 222
Sau96I GGNCC 2 cut(s) 80, 93
ScrFI CCNGG 1 cut(s) 229
SetI ASST 2 cut(s) 98, 222
SfcI CTRYAG 1 cut(s) 207
SinI GGWCC 2 cut(s) 80, 93
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SphI GCATGC 1 cut(s) 165
Sse9I AATT 2 cut(s) 104, 189
SsiI CCGC 2 cut(s) 118, 182
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 1 cut(s) 22
TasI AATT 2 cut(s) 104, 189
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseI GCWGC 1 cut(s) 34
Vha464I CTTAAG 1 cut(s) 131
VpaK11BI GGWCC 2 cut(s) 80, 93
XceI RCATGY 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.