Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001813

Physical Location & Seq

Genomic Coordinates Reverse (-)

44451840 .. 44453080

Gene Structure 1241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCTCGATCTCAGCGGAAAAAAAAACCCAAAATCCAGGAAAAAAAAAAGACACAGAGGAGACTTGGCCGAAATCGAACCAGCTTCTACTCTTCCTCCTCCGGCGAGGTCGAAGCCTCCCACTCGCACATCAAACAATTCACCAGGTACGCCCATTGACCAAGACATCTTCACCAACTACGCCGCCAAGCACCTTCGCCGAATCCGGCTATTTCAGCAACTGCCACGACCGAGTCAACATCCCCAATCTCCAATTCACTTCCTCGACTCGAGCTCAAACAATCACAAGCTCTCCTTCACCGGCTACAGCCCTCGCTTTCGCCTCCACCGGAATTTCATAACTGTAGTCGCTGGGATGCACGCGCTCCGGATGGAACCCAACCCGGCGGCGACTCTAGTTCTGATAGAGCAGTTCAATTTTAAAGGGATGTTGAAGGCGGTGGAGAGGTTCAAGGTGACAGCGATGTTCTGGCCGAGGACGGAGGCCGTCTCAGAGATGGTCTCGTACAGCTGCATTCGATCGGAGATGGTCTGGTATGCAAGTTATGACCGGTGCCTTTCACATTTGGAAATTTTGTGGATGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

196

Amino Acids

22.49

Weight (kDa)

10.24

Isoelectric Point (pI)

64.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37975 AT2G37975 AT3G54085 AT3G54085 AT3G54085
fragaria_vesca	FvH4_6g12280 FvH4_6g12280 FvH4_6g12280 FvH4_6g12280 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790
malus_domestica	MD04G1144200.v1.1 MD12G1158300.v1.1
prunus_persica	Prupe.2G244600_v2.0.a1 Prupe.2G244600_v2.0.a1 Prupe.2G244600_v2.0.a1 Prupe.6G268600_v2.0.a1 Prupe.6G268700_v2.0.a1
pyrus_communis	pycom01g16480 pycom04g13070 pycom12g15030
rosa_chinensis	RchiOBHm_Chr1g0369131 RchiOBHm_Chr3g0464081 RchiOBHm_Chr6g0266781
rosa_laevigata	RLG00000001475 RLG00000002225 RLG00000008995 RLG00000014079
rosa_multiflora	Rmu_sc0012140.1_g000012
rosa_roxburghii	Rroxscaffold_7G00162500 Rroxscaffold_7G00201440
rosa_rugosa	Rorug01G0348200 Rorug03G0070700 Rorug06G0027400
rosa_samantha	Rh3BG131800 Rh5CG489100 Rh6BG148500 Rh6CG144200 Rh6DG133100
rosa_wichuraiana	Rw1G031340 Rw3G010780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	552
AccII	CGCG	1 cut(s)	362
AccIII	TCCGGA	1 cut(s)	366
AciI	CCGC	4 cut(s)	15, 183, 386, 437
AcoI	YGGCCR	2 cut(s)	66, 470
AcsI	RAATTY	2 cut(s)	331, 570
AfaI	GTAC	2 cut(s)	148, 506
AgeI	ACCGGT	1 cut(s)	549
AgsI	TTSAA	3 cut(s)	415, 433, 451
AjnI	CCWGG	2 cut(s)	35, 142
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AluBI	AGCT	4 cut(s)	83, 273, 289, 510
AluI	AGCT	4 cut(s)	83, 273, 289, 510
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	3 cut(s)	54, 493, 505
AlwNI	CAGNNNCTG	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	268
Aor13HI	TCCGGA	1 cut(s)	366
AoxI	GGCC	3 cut(s)	66, 470, 483
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	2 cut(s)	331, 570
AsiGI	ACCGGT	1 cut(s)	549
AspLEI	GCGC	1 cut(s)	364
AsuC2I	CCSGG	1 cut(s)	383
AsuHPI	GGTGA	4 cut(s)	132, 163, 289, 466
AvaI	CYCGRG	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	552
BanII	GRGCYC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	3 cut(s)	364, 490, 520
BceAI	ACGGC	1 cut(s)	470
BciT130I	CCWGG	2 cut(s)	37, 144
BcnI	CCSGG	1 cut(s)	383
BcoDI	GTCTC	3 cut(s)	54, 493, 505
BfaI	CTAG	1 cut(s)	395
BfmI	CTRYAG	2 cut(s)	304, 342
BisI	GCNGC	3 cut(s)	183, 387, 511
BlsI	GCNGC	3 cut(s)	184, 388, 512
Bme1390I	CCNGG	3 cut(s)	37, 144, 383
BmeT110I	CYCGRG	1 cut(s)	268
BmiI	GGNNCC	2 cut(s)	375, 554
BmrFI	CCNGG	3 cut(s)	37, 144, 383
BmsI	GCATC	1 cut(s)	345
BplI	GAGNNNNNCTC	4 cut(s)	473, 505, 485, 517
BpuMI	CCSGG	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	1 cut(s)	473
BsaWI	WCCGGW	3 cut(s)	327, 366, 549
BsaXI	ACNNNNNCTCC	4 cut(s)	79, 109, 275, 305
Bse118I	RCCGGY	2 cut(s)	299, 549
BseAI	TCCGGA	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	37, 144
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	5 cut(s)	238, 360, 375, 432, 585
BseMII	CTCAG	2 cut(s)	25, 504
BseRI	GAGGAG	2 cut(s)	72, 87
BseXI	GCAGC	1 cut(s)	497
BseYI	CCCAGC	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	362
Bsh1285I	CGRYCG	2 cut(s)	230, 521
BshFI	GGCC	3 cut(s)	68, 472, 485
BshNI	GGYRCC	1 cut(s)	552
BshTI	ACCGGT	1 cut(s)	549
BsiEI	CGRYCG	2 cut(s)	230, 521
BsiHKAI	GWGCWC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	7 cut(s)	101, 205, 300, 328, 367, 383, 550
BsmAI	GTCTC	3 cut(s)	54, 493, 505
BsmBI	CGTCTC	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	3 cut(s)	68, 472, 485
Bso31I	GGTCTC	1 cut(s)	505
BsoBI	CYCGRG	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp13I	TCCGGA	1 cut(s)	366
Bsp143I	GATC	2 cut(s)	7, 518
BspACI	CCGC	4 cut(s)	15, 183, 386, 437
BspANI	GGCC	3 cut(s)	68, 472, 485
BspCNI	CTCAG	2 cut(s)	24, 503
BspEI	TCCGGA	1 cut(s)	366
BspFNI	CGCG	1 cut(s)	362
BspLI	GGNNCC	2 cut(s)	375, 554
BspT107I	GGYRCC	1 cut(s)	552
BspTNI	GGTCTC	1 cut(s)	505
BsrFI	RCCGGY	2 cut(s)	299, 549
BssAI	RCCGGY	2 cut(s)	299, 549
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	2 cut(s)	7, 518
Bst2UI	CCWGG	2 cut(s)	37, 144
Bst4CI	ACNGT	1 cut(s)	343
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	2 cut(s)	11, 490
BstF5I	GGATG	5 cut(s)	238, 360, 375, 432, 585
BstFNI	CGCG	1 cut(s)	362
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	2 cut(s)	10, 521
BstMAI	GTCTC	3 cut(s)	54, 493, 505
BstMBI	GATC	2 cut(s)	7, 518
BstMCI	CGRYCG	2 cut(s)	230, 521
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNI	CCWGG	2 cut(s)	37, 144
BstSCI	CCNGG	3 cut(s)	35, 142, 381
BstSFI	CTRYAG	2 cut(s)	304, 342
BstUI	CGCG	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	497
BsuRI	GGCC	3 cut(s)	68, 472, 485
BtgZI	GCGATG	1 cut(s)	476
BtsCI	GGATG	5 cut(s)	238, 360, 375, 432, 585
Cac8I	GCNNGC	1 cut(s)	360
CaiI	CAGNNNCTG	1 cut(s)	220
CfoI	GCGC	1 cut(s)	364
Cfr10I	RCCGGY	2 cut(s)	299, 549
CsiI	ACCWGGT	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	147, 505
CspAI	ACCGGT	1 cut(s)	549
CviQI	GTAC	2 cut(s)	147, 505
DdeI	CTNAG	2 cut(s)	11, 490
DpnI	GATC	2 cut(s)	9, 520
DpnII	GATC	2 cut(s)	7, 518
DraI	TTTAAA	1 cut(s)	421
EaeI	YGGCCR	2 cut(s)	66, 470
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	505
Eco53kI	GAGCTC	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	35, 142
EcoT38I	GRGCYC	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	493
FaiI	YATR	3 cut(s)	338, 537, 546
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
Fnu4HI	GCNGC	3 cut(s)	183, 387, 511
FokI	GGATG	4 cut(s)	225, 367, 382, 439
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	3 cut(s)	183, 387, 511
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	3 cut(s)	183, 387, 511
GsaI	CCCAGC	1 cut(s)	354
HaeIII	GGCC	3 cut(s)	68, 472, 485
HapII	CCGG	7 cut(s)	101, 205, 300, 328, 367, 383, 550
HhaI	GCGC	1 cut(s)	364
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HinfI	GANTC	4 cut(s)	201, 232, 266, 391
HpaII	CCGG	7 cut(s)	101, 205, 300, 328, 367, 383, 550
HphI	GGTGA	4 cut(s)	132, 163, 289, 466
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	3 cut(s)	402, 493, 523
Hpy188III	TCNNGA	1 cut(s)	367
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	3 cut(s)	203, 304, 427
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4V	TGCA	3 cut(s)	358, 513, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	2 cut(s)	11, 490
HspAI	GCGC	1 cut(s)	362
Kpn2I	TCCGGA	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	7, 518
LmnI	GCTCC	1 cut(s)	369
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	1 cut(s)	345
MabI	ACCWGGT	1 cut(s)	142
MaeI	CTAG	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	2 cut(s)	9, 520
MboI	GATC	2 cut(s)	7, 518
MboII	GAAGA	2 cut(s)	83, 160
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	5 cut(s)	136, 252, 331, 415, 570
MlyI	GAGTC	3 cut(s)	241, 260, 385
MroI	TCCGGA	1 cut(s)	366
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	2 cut(s)	15, 510
MspI	CCGG	7 cut(s)	101, 205, 300, 328, 367, 383, 550
MspR9I	CCNGG	3 cut(s)	37, 144, 383
Mva1269I	GAATGC	1 cut(s)	513
MvaI	CCWGG	2 cut(s)	37, 144
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	214
NciI	CCSGG	1 cut(s)	383
NdeII	GATC	2 cut(s)	7, 518
NlaIV	GGNNCC	2 cut(s)	375, 554
NmeAIII	GCCGAG	1 cut(s)	498
NmuCI	GTSAC	1 cut(s)	454
PaeR7I	CTCGAG	1 cut(s)	268
PctI	GAATGC	1 cut(s)	513
PfeI	GAWTC	1 cut(s)	201
PflFI	GACNNNGTC	1 cut(s)	231
PfoI	TCCNGGA	1 cut(s)	35
PinAI	ACCGGT	1 cut(s)	549
PkrI	GCNGC	3 cut(s)	184, 388, 512
Ple19I	CGATCG	1 cut(s)	521
PleI	GAGTC	3 cut(s)	240, 260, 385
PpsI	GAGTC	3 cut(s)	240, 260, 385
Psp124BI	GAGCTC	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	35, 142
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	2 cut(s)	35, 142
PspN4I	GGNNCC	2 cut(s)	375, 554
PspXI	VCTCGAGB	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	220
PsyI	GACNNNGTC	1 cut(s)	231
PvuI	CGATCG	1 cut(s)	521
PvuII	CAGCTG	1 cut(s)	510
RsaI	GTAC	2 cut(s)	148, 506
RsaNI	GTAC	2 cut(s)	147, 505
SacI	GAGCTC	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	3 cut(s)	183, 387, 511
Sau3AI	GATC	2 cut(s)	7, 518
SchI	GAGTC	3 cut(s)	241, 260, 385
ScrFI	CCNGG	3 cut(s)	37, 144, 383
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	9 cut(s)	85, 110, 148, 195, 275, 291, 449, 456, 512
SexAI	ACCWGGT	1 cut(s)	142
SfaNI	GCATC	1 cut(s)	345
SfcI	CTRYAG	2 cut(s)	304, 342
Sfr274I	CTCGAG	1 cut(s)	268
SlaI	CTCGAG	1 cut(s)	268
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
Sse9I	AATT	5 cut(s)	136, 252, 331, 415, 570
SsiI	CCGC	4 cut(s)	15, 183, 386, 437
SspMI	CTAG	1 cut(s)	395
SstI	GAGCTC	1 cut(s)	275
StyD4I	CCNGG	3 cut(s)	35, 142, 381
TaaI	ACNGT	1 cut(s)	343
TaqI	TCGA	6 cut(s)	6, 75, 110, 264, 269, 517
TaqII	GACCGA	1 cut(s)	244
TasI	AATT	5 cut(s)	136, 252, 331, 415, 570
TauI	GCSGC	2 cut(s)	185, 389
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	1 cut(s)	510
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	325
TspGWI	ACGGA	1 cut(s)	494
Tth111I	GACNNNGTC	1 cut(s)	231
XapI	RAATTY	2 cut(s)	331, 570
XhoI	CTCGAG	1 cut(s)	268
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.