Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001813

Physical Location & Seq

Genomic Coordinates Reverse (-)

26236050 .. 26238463

Gene Structure 2414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G244600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGGTTTGATGACACTACTTGAAGGCTTTCTGCTTCTTGCAAATGCACTAGCAATATTAAATGAGGACCGCTTCCTTGCGCCTAGAGGATGGAGCCTCGCAGAATTCTCAGTGGGCAGGACAAAGTCAGTCAAGGGACAGATTATAGGTCTCATTTACGCAACACAGTACTTGAGAGTTCCTCTCGTACTACTCAATACCGTCTGCATTGTTCTAAAATTGATATCTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yos1

Protein Analysis

78

Amino Acids

8.42

Weight (kDa)

9.51

Isoelectric Point (pI)

14.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37975 AT2G37975 AT3G54085 AT3G54085 AT3G54085
fragaria_vesca	FvH4_6g12280 FvH4_6g12280 FvH4_6g12280 FvH4_6g12280 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790
malus_domestica	MD04G1144200.v1.1 MD12G1158300.v1.1
prunus_persica	Prupe.2G244600_v2.0.a1 Prupe.2G244600_v2.0.a1 Prupe.2G244600_v2.0.a1 Prupe.6G268600_v2.0.a1 Prupe.6G268700_v2.0.a1
pyrus_communis	pycom01g16480 pycom04g13070 pycom12g15030
rosa_chinensis	RchiOBHm_Chr1g0369131 RchiOBHm_Chr3g0464081 RchiOBHm_Chr6g0266781
rosa_laevigata	RLG00000001475 RLG00000002225 RLG00000008995 RLG00000014079
rosa_multiflora	Rmu_sc0012140.1_g000012
rosa_roxburghii	Rroxscaffold_7G00162500 Rroxscaffold_7G00201440
rosa_rugosa	Rorug01G0348200 Rorug03G0070700 Rorug06G0027400
rosa_samantha	Rh3BG131800 Rh5CG489100 Rh6BG148500 Rh6CG144200 Rh6DG133100
rosa_wichuraiana	Rw1G031340 Rw3G010780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	2 cut(s)	170, 189
AgsI	TTSAA	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	67
BccI	CCATC	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	50, 84
BmcAI	AGTACT	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	95
BplI	GAGNNNNNCTC	4 cut(s)	166, 198, 168, 200
BpuEI	CTTGAG	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	155
BseGI	GGATG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	155
BspACI	CCGC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	155
Bst4CI	ACNGT	2 cut(s)	168, 202
BstDEI	CTNAG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	117
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	169, 188
CviJI	RGCY	2 cut(s)	27, 96
CviKI_1	RGCY	2 cut(s)	27, 96
CviQI	GTAC	2 cut(s)	169, 188
DdeI	CTNAG	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	104
EcoRV	GATATC	1 cut(s)	225
FaiI	YATR	1 cut(s)	146
FaqI	GGGAC	1 cut(s)	150
FokI	GGATG	1 cut(s)	102
FspBI	CTAG	2 cut(s)	50, 84
GlaI	GCGC	1 cut(s)	81
HhaI	GCGC	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	2 cut(s)	168, 202
HpyCH4V	TGCA	3 cut(s)	41, 47, 207
HpyF3I	CTNAG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	2 cut(s)	103, 213
MaeI	CTAG	2 cut(s)	50, 84
MluCI	AATT	2 cut(s)	104, 218
MnlI	CCTC	4 cut(s)	58, 80, 107, 192
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	1 cut(s)	59
NlaIV	GGNNCC	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	27
PflFI	GACNNNGTC	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	1 cut(s)	67
PsyI	GACNNNGTC	1 cut(s)	124
RsaI	GTAC	2 cut(s)	170, 189
RsaNI	GTAC	2 cut(s)	169, 188
SaqAI	TTAA	1 cut(s)	59
Sau96I	GGNCC	1 cut(s)	67
ScaI	AGTACT	1 cut(s)	170
SetI	ASST	1 cut(s)	151
SinI	GGWCC	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
Sse9I	AATT	2 cut(s)	104, 218
SsiI	CCGC	1 cut(s)	70
SspI	AATATT	1 cut(s)	57
SspMI	CTAG	2 cut(s)	50, 84
TaaI	ACNGT	2 cut(s)	168, 202
TasI	AATT	2 cut(s)	104, 218
TatI	WGTACW	1 cut(s)	168
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	1 cut(s)	117
TspRI	CASTG	1 cut(s)	117
Tth111I	GACNNNGTC	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	2 cut(s)	50, 84
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.