pycom12g15030

Protein transport protein yos1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0001813
Physical Location & Seq
Reverse (-)
17453386 .. 17454296
911 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g15030.1

Sequence Viewer

Length: 399 bp
ATGAAAACCTTGATTTGCGAGGACTTTCAGTCTTTGCTGTTGTTTCGTTTCGTTGAAAACAAGGCGAACGCTTTCGACCGAGAGACGACTTGTTGTCTGGAACAAGTAATCGCCGTGAACGGTGTTGGAATTGTTTCCTACCCGCTAATAAGTAGATTTTCTAAAATGGGTCTGTGGACTTTATTCCAAGGCCTCTTGCTTCTTGTAAATGCGTTTGCAATACTGAACGAAGATCGTTTTCTGGGTCCTAGAGGGTGGACCTTGCTACAATTTCAAGGAGAGCGGAGAACCACGCTTAAGGGGCAGATCATAGGATTTATACACGCATGCCAGTTCTTCAGATTTCCGCTCATAATTTTGAACATCGTAACCATTGTAGTGAAGCTGATCTCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yos1

Protein Analysis

133

Amino Acids

15.03

Weight (kDa)

9.13

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yos1 PF08571 58 - 132 1e-23 Yos1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 283, 349
AciI CCGC 3 cut(s) 143, 283, 347
AcuI CTGAAG 1 cut(s) 322
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 3 cut(s) 56, 275, 361
AhdI GACNNNNNGTC 2 cut(s) 28, 93
AluBI AGCT 1 cut(s) 385
AluI AGCT 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 1 cut(s) 190
Asp700I GAANNNNTTC 2 cut(s) 71, 133
AspS9I GGNCC 2 cut(s) 245, 258
AsuC2I CCSGG 1 cut(s) 394
AvaII GGWCC 2 cut(s) 245, 258
BceAI ACGGC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 249
BfrI CTTAAG 1 cut(s) 296
Bme1390I CCNGG 1 cut(s) 394
Bme18I GGWCC 2 cut(s) 245, 258
BmeRI GACNNNNNGTC 2 cut(s) 28, 93
BmgT120I GGNCC 2 cut(s) 245, 258
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 394
BpuMI CCSGG 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 331
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 79
BsiSI CCGG 1 cut(s) 393
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 192
Bsp143I GATC 3 cut(s) 232, 306, 387
BspACI CCGC 3 cut(s) 143, 283, 347
BspANI GGCC 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 246
BspTI CTTAAG 1 cut(s) 296
BsrBI CCGCTC 2 cut(s) 283, 349
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 3 cut(s) 232, 306, 387
BssT1I CCWWGG 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 122
BstAFI CTTAAG 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 328
BstKTI GATC 3 cut(s) 235, 309, 390
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 3 cut(s) 232, 306, 387
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 392
BsuRI GGCC 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 245, 258
CviAII CATG 1 cut(s) 327
CviJI RGCY 2 cut(s) 192, 385
CviKI_1 RGCY 2 cut(s) 192, 385
DpnI GATC 3 cut(s) 234, 308, 389
DpnII GATC 3 cut(s) 232, 306, 387
DriI GACNNNNNGTC 2 cut(s) 28, 93
Eam1105I GACNNNNNGTC 2 cut(s) 28, 93
Eco130I CCWWGG 1 cut(s) 187
Eco147I AGGCCT 1 cut(s) 192
Eco47I GGWCC 2 cut(s) 245, 258
Eco57I CTGAAG 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 1 cut(s) 330
FaiI YATR 4 cut(s) 311, 320, 328, 353
FatI CATG 1 cut(s) 326
FauI CCCGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 393
Hin1II CATG 1 cut(s) 330
HpaII CCGG 1 cut(s) 393
Hpy166II GTNNAC 3 cut(s) 118, 177, 258
Hpy188I TCNGA 1 cut(s) 341
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 3 cut(s) 118, 177, 258
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
Hsp92II CATG 1 cut(s) 330
Kzo9I GATC 3 cut(s) 232, 306, 387
LpnPI CCDG 3 cut(s) 83, 227, 344
MaeI CTAG 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 367
MalI GATC 3 cut(s) 234, 308, 389
MbiI CCGCTC 2 cut(s) 283, 349
MboI GATC 3 cut(s) 232, 306, 387
MboII GAAGA 2 cut(s) 242, 328
MluCI AATT 3 cut(s) 129, 269, 354
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 3 cut(s) 13, 203, 245
MroXI GAANNNNTTC 2 cut(s) 71, 133
MseI TTAA 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 377
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 394
MwoI GCNNNNNNNGC 1 cut(s) 301
NciI CCSGG 1 cut(s) 394
NdeII GATC 3 cut(s) 232, 306, 387
NlaIII CATG 1 cut(s) 330
NlaIV GGNNCC 1 cut(s) 246
NspI RCATGY 1 cut(s) 330
PaeI GCATGC 1 cut(s) 330
PceI AGGCCT 1 cut(s) 192
PdmI GAANNNNTTC 2 cut(s) 71, 133
PpuMI RGGWCCY 1 cut(s) 245
Psp5II RGGWCCY 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 2 cut(s) 245, 258
PspPPI RGGWCCY 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 1 cut(s) 297
Sau3AI GATC 3 cut(s) 232, 306, 387
Sau96I GGNCC 2 cut(s) 245, 258
ScrFI CCNGG 1 cut(s) 394
SetI ASST 3 cut(s) 11, 263, 387
SinI GGWCC 2 cut(s) 245, 258
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SphI GCATGC 1 cut(s) 330
Sse9I AATT 3 cut(s) 129, 269, 354
SseBI AGGCCT 1 cut(s) 192
SsiI CCGC 3 cut(s) 143, 283, 347
SspMI CTAG 1 cut(s) 249
StuI AGGCCT 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 392
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 75
TaqII GACCGA 1 cut(s) 93
TasI AATT 3 cut(s) 129, 269, 354
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TspDTI ATGAA 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 245, 258
XceI RCATGY 1 cut(s) 330
XmnI GAANNNNTTC 2 cut(s) 71, 133
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.