Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001813

Physical Location & Seq

Genomic Coordinates Reverse (-)

16081216 .. 16082754

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001475

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGATTCGAGTATGGGTCCCAGGCCAAGACTCAATTTTTTCCCCTACTGCGGCGCCAGATTCATCGAGGATATCCAGACTGGCCCCGAAACAATCTCCTCATAGCCATCCATTTTCTGGCTTACGCGATGGTCCTCTACAATTCACTGATATCGCAGAGCCCAAGGTTGTTGTGGAGCAAGAGGAGCACGCTAATATCCAGACCCGAGCCCAAGGCTGCGACAGATGGCTGAAGGGGAGTTCTGCTCTGCTGCTCCTTTCATCATCGACTCGTGATCAGAGACCAATCAGCTGTATTAGAAGGCCACCAATCCCACACTTTTGCCTTCTTATCTTCAAGGTCAATGTGTATACAATTCTGTTTCTCGCTCGAATGGGGTTAAGTCTGAAAGATGATCAAGCTAGGGATGAGAGGAAGAAGCTCATCAATTTCAAGTATTGGGTCACAGGAATTTTACAGGCAGCCGTTGGTCCAAGCAAATCCTCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.31

Weight (kDa)

9.76

Isoelectric Point (pI)

55.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37975 AT2G37975 AT3G54085 AT3G54085 AT3G54085
fragaria_vesca	FvH4_6g12280 FvH4_6g12280 FvH4_6g12280 FvH4_6g12280 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790 FvH4_7g23790
malus_domestica	MD04G1144200.v1.1 MD12G1158300.v1.1
prunus_persica	Prupe.2G244600_v2.0.a1 Prupe.2G244600_v2.0.a1 Prupe.2G244600_v2.0.a1 Prupe.6G268600_v2.0.a1 Prupe.6G268700_v2.0.a1
pyrus_communis	pycom01g16480 pycom04g13070 pycom12g15030
rosa_chinensis	RchiOBHm_Chr1g0369131 RchiOBHm_Chr3g0464081 RchiOBHm_Chr6g0266781
rosa_laevigata	RLG00000001475 RLG00000002225 RLG00000008995 RLG00000014079
rosa_multiflora	Rmu_sc0012140.1_g000012
rosa_roxburghii	Rroxscaffold_7G00162500 Rroxscaffold_7G00201440
rosa_rugosa	Rorug01G0348200 Rorug03G0070700 Rorug06G0027400
rosa_samantha	Rh3BG131800 Rh5CG489100 Rh6BG148500 Rh6CG144200 Rh6DG133100
rosa_wichuraiana	Rw1G031340 Rw3G010780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	52
AccB7I	CCANNNNNTGG	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	350
AccII	CGCG	1 cut(s)	126
AciI	CCGC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	450
AcuI	CTGAAG	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	49, 116
AgsI	TTSAA	2 cut(s)	337, 433
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	3 cut(s)	291, 401, 421
AluI	AGCT	3 cut(s)	291, 401, 421
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	204
AoxI	GGCC	3 cut(s)	22, 81, 302
ApeKI	GCWGC	3 cut(s)	216, 250, 461
ApoI	RAATTY	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	4 cut(s)	16, 82, 131, 470
AvaI	CYCGRG	1 cut(s)	204
AvaII	GGWCC	3 cut(s)	16, 131, 470
BanI	GGYRCC	1 cut(s)	52
BanII	GRGCYC	2 cut(s)	162, 211
BauI	CACGAG	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	3 cut(s)	203, 237, 473
BccI	CCATC	3 cut(s)	114, 122, 219
BceAI	ACGGC	1 cut(s)	449
BciT130I	CCWGG	1 cut(s)	21
BclI	TGATCA	2 cut(s)	274, 394
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	1 cut(s)	402
BfoI	RGCGCY	1 cut(s)	56
BisI	GCNGC	4 cut(s)	51, 217, 251, 462
BlsI	GCNGC	4 cut(s)	52, 218, 252, 463
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	3 cut(s)	16, 131, 470
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	4 cut(s)	16, 82, 131, 470
BmiI	GGNNCC	4 cut(s)	17, 18, 54, 84
BmrFI	CCNGG	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
BsaHI	GRCGYC	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	3 cut(s)	19, 162, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 116
Bse1I	ACTGG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	3 cut(s)	19, 162, 211
BseGI	GGATG	2 cut(s)	106, 412
BseLI	CCNNNNNNNGG	2 cut(s)	49, 116
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	2 cut(s)	87, 197
BseXI	GCAGC	3 cut(s)	203, 237, 473
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	3 cut(s)	24, 83, 304
BshNI	GGYRCC	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	2 cut(s)	49, 116
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	2
BsnI	GGCC	3 cut(s)	24, 83, 304
Bso31I	GGTCTC	1 cut(s)	274
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	3 cut(s)	162, 189, 211
Bsp143I	GATC	2 cut(s)	274, 394
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	3 cut(s)	24, 83, 304
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	4 cut(s)	17, 18, 54, 84
BspT107I	GGYRCC	1 cut(s)	52
BspTNI	GGTCTC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	3 cut(s)	19, 162, 211
BssMI	GATC	2 cut(s)	274, 394
BssNAI	GTATAC	1 cut(s)	351
BssNI	GRCGYC	1 cut(s)	53
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	2 cut(s)	162, 211
Bst1107I	GTATAC	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	106, 412
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	2 cut(s)	277, 397
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	2 cut(s)	274, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	19
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	3 cut(s)	203, 237, 473
BstZ17I	GTATAC	1 cut(s)	351
BsuRI	GGCC	3 cut(s)	24, 83, 304
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	106, 412
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	4 cut(s)	16, 82, 131, 470
DinI	GGCGCC	1 cut(s)	54
DpnI	GATC	2 cut(s)	276, 396
DpnII	GATC	2 cut(s)	274, 394
Eco130I	CCWWGG	2 cut(s)	162, 211
Eco24I	GRGCYC	2 cut(s)	162, 211
Eco31I	GGTCTC	1 cut(s)	274
Eco32I	GATATC	2 cut(s)	72, 151
Eco47I	GGWCC	3 cut(s)	16, 131, 470
Eco57I	CTGAAG	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	19
EcoRV	GATATC	2 cut(s)	72, 151
EcoT14I	CCWWGG	2 cut(s)	162, 211
EcoT38I	GRGCYC	2 cut(s)	162, 211
EgeI	GGCGCC	1 cut(s)	54
EheI	GGCGCC	1 cut(s)	54
ErhI	CCWWGG	2 cut(s)	162, 211
FaiI	YATR	4 cut(s)	13, 102, 351, 487
FaqI	GGGAC	1 cut(s)	2
FbaI	TGATCA	2 cut(s)	274, 394
FblI	GTMKAC	1 cut(s)	350
Fnu4HI	GCNGC	4 cut(s)	51, 217, 251, 462
FokI	GGATG	2 cut(s)	93, 419
FriOI	GRGCYC	2 cut(s)	162, 211
Fsp4HI	GCNGC	4 cut(s)	51, 217, 251, 462
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	4 cut(s)	51, 217, 251, 462
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	3 cut(s)	24, 83, 304
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	53
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	4 cut(s)	4, 29, 59, 268
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	2 cut(s)	279, 387
Hpy188III	TCNNGA	3 cut(s)	75, 199, 272
Hpy8I	GTNNAC	1 cut(s)	351
HpyAV	CCTTC	3 cut(s)	226, 294, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
Hsp92I	GRCGYC	1 cut(s)	53
HspAI	GCGC	1 cut(s)	53
KasI	GGCGCC	1 cut(s)	52
KflI	GGGWCCC	1 cut(s)	16
Ksp22I	TGATCA	2 cut(s)	274, 394
Kzo9I	GATC	2 cut(s)	274, 394
LmnI	GCTCC	3 cut(s)	175, 184, 258
LpnPI	CCDG	9 cut(s)	6, 33, 65, 69, 88, 102, 212, 432, 443
Lsp1109I	GCAGC	3 cut(s)	203, 237, 473
MaeI	CTAG	1 cut(s)	402
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	2 cut(s)	276, 396
MboI	GATC	2 cut(s)	274, 394
MboII	GAAGA	2 cut(s)	325, 427
MhlI	GDGCHC	3 cut(s)	162, 189, 211
MluCI	AATT	5 cut(s)	33, 140, 354, 427, 450
Mly113I	GGCGCC	1 cut(s)	53
MlyI	GAGTC	2 cut(s)	23, 262
MnlI	CCTC	5 cut(s)	60, 108, 144, 175, 405
MseI	TTAA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	21
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	184
NarI	GGCGCC	1 cut(s)	53
NdeII	GATC	2 cut(s)	274, 394
NlaIV	GGNNCC	4 cut(s)	17, 18, 54, 84
NmuCI	GTSAC	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	4, 59
PflMI	CCANNNNNTGG	1 cut(s)	116
PkrI	GCNGC	4 cut(s)	52, 218, 252, 463
PleI	GAGTC	2 cut(s)	23, 262
PluTI	GGCGCC	1 cut(s)	56
PpsI	GAGTC	2 cut(s)	23, 262
PpuMI	RGGWCCY	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	4 cut(s)	17, 18, 54, 84
PspPI	GGNCC	4 cut(s)	16, 82, 131, 470
PspPPI	RGGWCCY	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	4 cut(s)	51, 217, 251, 462
Sau3AI	GATC	2 cut(s)	274, 394
Sau96I	GGNCC	4 cut(s)	16, 82, 131, 470
SchI	GAGTC	2 cut(s)	23, 262
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	3 cut(s)	162, 189, 211
SetI	ASST	5 cut(s)	168, 293, 342, 403, 423
SfoI	GGCGCC	1 cut(s)	54
SinI	GGWCC	3 cut(s)	16, 131, 470
Sse9I	AATT	5 cut(s)	33, 140, 354, 427, 450
SsiI	CCGC	1 cut(s)	50
SspDI	GGCGCC	1 cut(s)	52
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	19
StyI	CCWWGG	2 cut(s)	162, 211
TaqI	TCGA	4 cut(s)	7, 65, 266, 370
TasI	AATT	5 cut(s)	33, 140, 354, 427, 450
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	4, 59
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	3 cut(s)	216, 250, 461
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	2 cut(s)	51, 249
TspRI	CASTG	1 cut(s)	151
Van91I	CCANNNNNTGG	1 cut(s)	116
VpaK11BI	GGWCC	3 cut(s)	16, 131, 470
XapI	RAATTY	1 cut(s)	450
XcmI	CCANNNNNNNNNTGG	2 cut(s)	113, 169
XmiI	GTMKAC	1 cut(s)	350
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.