AT3G61700

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001091
Physical Location & Seq
Forward (+)
22835127 .. 22839188
4062 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61700.3

Sequence Viewer

Length: 1080 bp
ATGAAGAACGGACAGTGCGCACAGGAGCTACAATCTTCCACTCAAGCTTCACATGACTCTCAAGGTGACCAGAAAACCAACCTATCAATAGATGCTCCTATACAAGATTCTGGTTCTGTATCTGCTTCAAGCAATGACAGTAGGAAAGTTTCACGACAAGATATTGAACTTGTTCAAAATTTGATAGAAAGATGTCTTCAGTTGTACATGAACAGAGATGAGGTCGTGAAGACTCTCTTGACTCGTGCAAGGATAGACCCTGGATTTACAACCTTGGTTTGGCAGAAATTGGAAGAAGAAAACGCAGACTTTTTCAGGGCATATTATATAAGGCTGAAACTGAAGAAGCAAATAATTTTGTTCAATCATTTGCTTGAGCACCAGTACCATCTCATGAAGTATCCTCCTGGACCTCCAAAAGTTCCTCTGGCACCGATACAAAACGGAATGCATCCCATGGCACCTGTTAACATGCCGATGGGATACCCAGTACTACAACATCCTCAAATGCATGTTCCAGGCCATCCCCATCATCTTGATGCAATGGGAGTATCGAGCTGCCATGTTGTTAATGGAGTCCCTGCCCCTGCTAATTTCCATCCTTTGAGAATGAATACAGCGAATGATATGGTGATCGATACAACTGCGAACGATGCAACTCCTCAAGTGATTCCACCAAACAGTGGTGCGATGCCTGAGATGGTAGCGAGTCCAGCTTCTGTGGCGTCAAGTGGACACTTTCCATTTGCTGCTTCAGACATGTCGGGTATGGTAATGGACACTTCAGTACTTGATTCGGCATTCACATCTGACGTTGGACCGGATGGAGAAGGAGCCGGGAATTCCAGAGATTCCCTCAGGTCATTTGATCAGATCCCTTGGAACTTTAGCCTTTCTGATCTCACCGCAGATTTGTCAAATCTGGGAGATTTAGGAGCCTTAGGAAACTATCCAGGCTCTCCATTTCTTCCATCTGATTCAGAGATTTTCCTGGATTCTCCTGAACAAGAGGACATAGAGGAGTTTTTCGTGGATTCGGTGCCTGGACCTCGTTCTAATTCAGATGAAGAGAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

359

Amino Acids

39.23

Weight (kDa)

4.78

Isoelectric Point (pI)

58.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 58 - 109 2.1e-25 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 19
AccB1I GGYRCC 3 cut(s) 430, 460, 1039
AccB7I CCANNNNNTGG 1 cut(s) 683
AciI CCGC 1 cut(s) 906
AclWI GGATC 1 cut(s) 868
AcsI RAATTY 2 cut(s) 178, 841
AcuI CTGAAG 4 cut(s) 182, 362, 738, 768
AcyI GRCGYC 1 cut(s) 725
AfaI GTAC 4 cut(s) 206, 386, 492, 789
AfiI CCNNNNNNNGG 2 cut(s) 279, 683
AflIII ACRYGT 1 cut(s) 759
AgsI TTSAA 4 cut(s) 129, 167, 176, 364
AjnI CCWGG 6 cut(s) 259, 406, 517, 952, 990, 1042
AluBI AGCT 4 cut(s) 28, 47, 558, 716
AluI AGCT 4 cut(s) 28, 47, 558, 716
Alw21I GWGCWC 1 cut(s) 381
AlwI GGATC 1 cut(s) 868
AlwNI CAGNNNCTG 1 cut(s) 719
AoxI GGCC 1 cut(s) 520
ApeKI GCWGC 2 cut(s) 558, 749
ApoI RAATTY 2 cut(s) 178, 841
Asp700I GAANNNNTTC 1 cut(s) 171
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 3 cut(s) 410, 818, 1046
AsuC2I CCSGG 1 cut(s) 838
AsuHPI GGTGA 3 cut(s) 77, 643, 895
AvaII GGWCC 3 cut(s) 410, 818, 1046
AxyI CCTNAGG 2 cut(s) 857, 940
BanI GGYRCC 3 cut(s) 430, 460, 1039
BauI CACGAG 1 cut(s) 243
BbsI GAAGAC 2 cut(s) 188, 236
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 2 cut(s) 545, 736
BccI CCATC 8 cut(s) 396, 472, 531, 537, 606, 694, 818, 979
BcgI CGANNNNNNTGC 2 cut(s) 626, 660
BciT130I CCWGG 6 cut(s) 261, 408, 519, 954, 992, 1044
BciVI GTATCC 2 cut(s) 411, 476
BclI TGATCA 1 cut(s) 868
BcnI CCSGG 1 cut(s) 838
BfuI GTATCC 2 cut(s) 411, 476
BisI GCNGC 2 cut(s) 559, 750
BlsI GCNGC 2 cut(s) 560, 751
BmcAI AGTACT 2 cut(s) 492, 789
Bme1390I CCNGG 7 cut(s) 261, 408, 519, 838, 954, 992, 1044
Bme18I GGWCC 3 cut(s) 410, 818, 1046
BmgT120I GGNCC 3 cut(s) 410, 818, 1046
BmiI GGNNCC 5 cut(s) 432, 462, 835, 937, 1041
BmrFI CCNGG 7 cut(s) 261, 408, 519, 838, 954, 992, 1044
BmrI ACTGGG 1 cut(s) 482
BmsI GCATC 5 cut(s) 82, 460, 529, 643, 681
BmuI ACTGGG 1 cut(s) 482
BpiI GAAGAC 2 cut(s) 188, 236
BplI GAGNNNNNCTC 2 cut(s) 840, 872
BpuEI CTTGAG 4 cut(s) 27, 45, 395, 648
BpuMI CCSGG 1 cut(s) 838
Bsa29I ATCGAT 1 cut(s) 636
BsaHI GRCGYC 1 cut(s) 725
BsaJI CCNNGG 4 cut(s) 259, 273, 456, 878
BsaWI WCCGGW 1 cut(s) 820
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 683
Bse1I ACTGG 2 cut(s) 382, 488
Bse21I CCTNAGG 2 cut(s) 857, 940
Bse3DI GCAATG 2 cut(s) 139, 549
BseBI CCWGG 6 cut(s) 261, 408, 519, 954, 992, 1044
BseCI ATCGAT 1 cut(s) 636
BseDI CCNNGG 4 cut(s) 259, 273, 456, 878
BseGI GGATG 5 cut(s) 451, 499, 523, 598, 829
BseLI CCNNNNNNNGG 2 cut(s) 279, 683
BseMI GCAATG 2 cut(s) 139, 549
BseMII CTCAG 2 cut(s) 687, 871
BseNI ACTGG 2 cut(s) 382, 488
BseRI GAGGAG 2 cut(s) 651, 1034
BseXI GCAGC 2 cut(s) 545, 736
BshFI GGCC 1 cut(s) 522
BshNI GGYRCC 3 cut(s) 430, 460, 1039
BshVI ATCGAT 1 cut(s) 636
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 2 cut(s) 821, 837
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 2 cut(s) 279, 683
BsmFI GGGAC 1 cut(s) 563
BsmI GAATGC 2 cut(s) 453, 800
BsnI GGCC 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 381
Bsp1407I TGTACA 1 cut(s) 204
Bsp143I GATC 4 cut(s) 633, 868, 873, 898
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 1 cut(s) 906
BspANI GGCC 1 cut(s) 522
BspCNI CTCAG 2 cut(s) 688, 870
BspDI ATCGAT 1 cut(s) 636
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 5 cut(s) 432, 462, 835, 937, 1041
BspPI GGATC 1 cut(s) 868
BspT107I GGYRCC 3 cut(s) 430, 460, 1039
BsrDI GCAATG 2 cut(s) 139, 549
BsrGI TGTACA 1 cut(s) 204
BsrI ACTGG 2 cut(s) 382, 488
BssECI CCNNGG 4 cut(s) 259, 273, 456, 878
BssMI GATC 4 cut(s) 633, 868, 873, 898
BssNI GRCGYC 1 cut(s) 725
BssSI CACGAG 1 cut(s) 243
BssT1I CCWWGG 3 cut(s) 273, 456, 878
Bst2BI CACGAG 1 cut(s) 243
Bst2UI CCWGG 6 cut(s) 261, 408, 519, 954, 992, 1044
Bst4CI ACNGT 3 cut(s) 15, 140, 683
Bst6I CTCTTC 1 cut(s) 1062
BstACI GRCGYC 1 cut(s) 725
BstAUI TGTACA 1 cut(s) 204
BstDEI CTNAG 3 cut(s) 696, 857, 940
BstDSI CCRYGG 1 cut(s) 456
BstEII GGTNACC 1 cut(s) 65
BstF5I GGATG 5 cut(s) 451, 499, 523, 598, 829
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 4 cut(s) 636, 871, 876, 901
BstMBI GATC 4 cut(s) 633, 868, 873, 898
BstMWI GCNNNNNNNGC 3 cut(s) 653, 713, 722
BstNI CCWGG 6 cut(s) 261, 408, 519, 954, 992, 1044
BstNSI RCATGY 3 cut(s) 475, 515, 763
BstPI GGTNACC 1 cut(s) 65
BstSCI CCNGG 7 cut(s) 259, 406, 517, 836, 952, 990, 1042
BstV1I GCAGC 2 cut(s) 545, 736
BstV2I GAAGAC 2 cut(s) 188, 236
BstX2I RGATCY 1 cut(s) 873
BstYI RGATCY 1 cut(s) 873
Bsu15I ATCGAT 1 cut(s) 636
Bsu36I CCTNAGG 2 cut(s) 857, 940
BsuI GTATCC 2 cut(s) 411, 476
BsuRI GGCC 1 cut(s) 522
BsuTUI ATCGAT 1 cut(s) 636
BtgI CCRYGG 1 cut(s) 456
BtgZI GCGATG 1 cut(s) 704
BtsCI GGATG 5 cut(s) 451, 499, 523, 598, 829
BtsIMutI CAGTG 2 cut(s) 20, 688
CaiI CAGNNNCTG 1 cut(s) 719
CciI TCATGA 1 cut(s) 393
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 3 cut(s) 410, 818, 1046
ClaI ATCGAT 1 cut(s) 636
CseI GACGC 1 cut(s) 714
Csp6I GTAC 4 cut(s) 205, 385, 491, 788
CviAII CATG 8 cut(s) 53, 208, 394, 457, 472, 512, 563, 760
CviQI GTAC 4 cut(s) 205, 385, 491, 788
DdeI CTNAG 3 cut(s) 696, 857, 940
DpnI GATC 4 cut(s) 635, 870, 875, 900
DpnII GATC 4 cut(s) 633, 868, 873, 898
Eam1104I CTCTTC 1 cut(s) 1062
EarI CTCTTC 1 cut(s) 1062
Eco130I CCWWGG 3 cut(s) 273, 456, 878
Eco47I GGWCC 3 cut(s) 410, 818, 1046
Eco57I CTGAAG 4 cut(s) 182, 362, 738, 768
Eco81I CCTNAGG 2 cut(s) 857, 940
Eco91I GGTNACC 1 cut(s) 65
EcoO65I GGTNACC 1 cut(s) 65
EcoRI GAATTC 1 cut(s) 841
EcoRII CCWGG 6 cut(s) 259, 406, 517, 952, 990, 1042
EcoT14I CCWWGG 3 cut(s) 273, 456, 878
EcoT22I ATGCAT 2 cut(s) 453, 513
ErhI CCWWGG 3 cut(s) 273, 456, 878
FaeI CATG 8 cut(s) 56, 211, 397, 460, 475, 515, 566, 763
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 1 cut(s) 563
FatI CATG 8 cut(s) 52, 207, 393, 456, 471, 511, 562, 759
FbaI TGATCA 1 cut(s) 868
Fnu4HI GCNGC 2 cut(s) 559, 750
FokI GGATG 5 cut(s) 438, 486, 510, 585, 836
Fsp4HI GCNGC 2 cut(s) 559, 750
FspAI RTGCGCAY 1 cut(s) 19
FspI TGCGCA 1 cut(s) 19
GlaI GCGC 1 cut(s) 19
GluI GCNGC 2 cut(s) 559, 750
HaeIII GGCC 1 cut(s) 522
HapII CCGG 2 cut(s) 821, 837
HgaI GACGC 1 cut(s) 714
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 725
Hin1II CATG 8 cut(s) 56, 211, 397, 460, 475, 515, 566, 763
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HindIII AAGCTT 1 cut(s) 45
HpaI GTTAAC 1 cut(s) 469
HpaII CCGG 2 cut(s) 821, 837
HphI GGTGA 3 cut(s) 77, 643, 895
Hpy166II GTNNAC 2 cut(s) 469, 734
Hpy188I TCNGA 7 cut(s) 757, 811, 873, 898, 976, 982, 1063
Hpy188III TCNNGA 7 cut(s) 153, 226, 238, 394, 536, 846, 1001
Hpy8I GTNNAC 2 cut(s) 469, 734
HpyAV CCTTC 1 cut(s) 824
HpyCH4III ACNGT 3 cut(s) 15, 140, 683
HpyCH4IV ACGT 1 cut(s) 813
HpyCH4V TGCA 5 cut(s) 248, 451, 511, 542, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 653, 713, 722
HpyF3I CTNAG 3 cut(s) 696, 857, 940
HpySE526I ACGT 1 cut(s) 813
Hsp92I GRCGYC 1 cut(s) 725
Hsp92II CATG 8 cut(s) 56, 211, 397, 460, 475, 515, 566, 763
HspAI GCGC 1 cut(s) 18
Ksp22I TGATCA 1 cut(s) 868
KspAI GTTAAC 1 cut(s) 469
Kzo9I GATC 4 cut(s) 633, 868, 873, 898
LmnI GCTCC 4 cut(s) 25, 100, 833, 935
Lsp1109I GCAGC 2 cut(s) 545, 736
LweI GCATC 5 cut(s) 82, 460, 529, 643, 681
MaeII ACGT 1 cut(s) 813
MaeIII GTNAC 1 cut(s) 65
MalI GATC 4 cut(s) 635, 870, 875, 900
MboI GATC 4 cut(s) 633, 868, 873, 898
MboII GAAGA 9 cut(s) 16, 27, 188, 241, 305, 308, 355, 959, 1079
MflI RGATCY 1 cut(s) 873
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 6 cut(s) 178, 287, 354, 592, 841, 1057
MlyI GAGTC 5 cut(s) 50, 226, 235, 585, 718
MmeI TCCRAC 1 cut(s) 796
Mph1103I ATGCAT 2 cut(s) 453, 513
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 2 cut(s) 468, 570
MslI CAYNNNNRTG 2 cut(s) 476, 537
MspI CCGG 2 cut(s) 821, 837
MspR9I CCNGG 7 cut(s) 261, 408, 519, 838, 954, 992, 1044
Mva1269I GAATGC 2 cut(s) 453, 800
MvaI CCWGG 6 cut(s) 261, 408, 519, 954, 992, 1044
MwoI GCNNNNNNNGC 3 cut(s) 653, 713, 722
NciI CCSGG 1 cut(s) 838
NcoI CCATGG 1 cut(s) 456
NdeII GATC 4 cut(s) 633, 868, 873, 898
NlaIII CATG 8 cut(s) 56, 211, 397, 460, 475, 515, 566, 763
NlaIV GGNNCC 5 cut(s) 432, 462, 835, 937, 1041
NmuCI GTSAC 1 cut(s) 65
NsbI TGCGCA 1 cut(s) 19
NsiI ATGCAT 2 cut(s) 453, 513
NspI RCATGY 3 cut(s) 475, 515, 763
PagI TCATGA 1 cut(s) 393
PciI ACATGT 1 cut(s) 759
PctI GAATGC 2 cut(s) 453, 800
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 7 cut(s) 107, 670, 794, 851, 977, 995, 1034
PflMI CCANNNNNTGG 1 cut(s) 683
PfoI TCCNGGA 2 cut(s) 406, 990
PkrI GCNGC 2 cut(s) 560, 751
PleI GAGTC 5 cut(s) 50, 226, 235, 584, 717
PpsI GAGTC 5 cut(s) 50, 226, 235, 584, 717
PscI ACATGT 1 cut(s) 759
Psp6I CCWGG 6 cut(s) 259, 406, 517, 952, 990, 1042
PspEI GGTNACC 1 cut(s) 65
PspGI CCWGG 6 cut(s) 259, 406, 517, 952, 990, 1042
PspN4I GGNNCC 5 cut(s) 432, 462, 835, 937, 1041
PspPI GGNCC 3 cut(s) 410, 818, 1046
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 1 cut(s) 873
RsaI GTAC 4 cut(s) 206, 386, 492, 789
RsaNI GTAC 4 cut(s) 205, 385, 491, 788
RseI CAYNNNNRTG 2 cut(s) 476, 537
SaqAI TTAA 2 cut(s) 468, 570
SatI GCNGC 2 cut(s) 559, 750
Sau3AI GATC 4 cut(s) 633, 868, 873, 898
Sau96I GGNCC 3 cut(s) 410, 818, 1046
ScaI AGTACT 2 cut(s) 492, 789
SchI GAGTC 5 cut(s) 50, 226, 235, 585, 718
ScrFI CCNGG 7 cut(s) 261, 408, 519, 838, 954, 992, 1044
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 5 cut(s) 82, 460, 529, 643, 681
SinI GGWCC 3 cut(s) 410, 818, 1046
SmiMI CAYNNNNRTG 2 cut(s) 476, 537
SmlI CTYRAG 4 cut(s) 42, 60, 374, 663
SmoI CTYRAG 4 cut(s) 42, 60, 374, 663
Sse9I AATT 6 cut(s) 178, 287, 354, 592, 841, 1057
SsiI CCGC 1 cut(s) 906
StyD4I CCNGG 7 cut(s) 259, 406, 517, 836, 952, 990, 1042
StyI CCWWGG 3 cut(s) 273, 456, 878
TaaI ACNGT 3 cut(s) 15, 140, 683
TaiI ACGT 1 cut(s) 816
TaqI TCGA 2 cut(s) 554, 636
TasI AATT 6 cut(s) 178, 287, 354, 592, 841, 1057
TatI WGTACW 3 cut(s) 204, 490, 787
TfiI GAWTC 7 cut(s) 107, 670, 794, 851, 977, 995, 1034
Tru1I TTAA 2 cut(s) 468, 570
Tru9I TTAA 2 cut(s) 468, 570
TscAI CASTG 2 cut(s) 20, 688
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 2 cut(s) 558, 749
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 5 cut(s) 17, 224, 410, 626, 1080
TspGWI ACGGA 2 cut(s) 24, 459
TspRI CASTG 2 cut(s) 20, 688
Van91I CCANNNNNTGG 1 cut(s) 683
VpaK11BI GGWCC 3 cut(s) 410, 818, 1046
XapI RAATTY 2 cut(s) 178, 841
XceI RCATGY 3 cut(s) 475, 515, 763
XcmI CCANNNNNNNNNTGG 1 cut(s) 569
XmnI GAANNNNTTC 1 cut(s) 171
ZrmI AGTACT 2 cut(s) 492, 789
Zsp2I ATGCAT 2 cut(s) 453, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.