Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001091

Physical Location & Seq

Genomic Coordinates Forward (+)

18678483 .. 18683243

Gene Structure 4761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1079500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAAGAACTTACAGAGCACGCAAGAAAATCAATCATCAACTCAAGTTTTACATGATTCACAAGGTGACCAAGTGAAAAACCAAAGTAATAAGCCTCCTGCAACAGATTCAGCTTCAATATCTAATTCAGGCAATGATAACAAGAAAGTATCACGCCAAGATATTGAACTTGTCCAGAATCTTATAGAGCGGTGTTTACAATTATATATGAATAGAGATGAGGTAGTTAAAACCCTCTTGACTCATGCAAGGATAGATCCTGGATTTACAACTTTGGTATGGCAGAAGTTGGAAGAAGAAAATGCCGACTTTTTCAGGGCCTATTACATAAGGCTAAAATTGAAAAAACAAATCCTCCTTTTCAATCATTTGCTGGAACATCACTATCATCTCTCGAAGTATAATCTCATGCCTCTGAAGGTTCCTTTGGCCCCCATACAAAATGGGATCCATCCCATGCCTGTTAACAACTTACCTATGGGATACCCCGTCCTTCAGCAACCTCCGATGCCAGCAGCAGGTCAACCCCATCTCGATTCCATGGGATGTGCAATATCCAACTGTCATGTAGTTAATGGGGTACCTGCACCTAGCAGCTTTCATCCCATGCAGATGAGTTCTGGGAATGATGGTGCTGATGTGGTTCCTGTCATTCCACCAAACAGTGCCATGTCATCCATGTCGGAGATGCCTGTAAGTCCTACATCAGTTGCATCGAGTGGTCACTTCCCGTTCTCTGCTTCAGAAATATCTGGAATGGGAGTAGACACGTCACTTGATACACCATTTACATCTGACGTGGCAAGTTCTGTCGGATTGCAACTTGCACCTGATTGTGGAGCTGGAAATTCTCGGGATTCTCTCAGATCACTGGACCAAATTCCAATTCCGTGGAATCTCAGTTTATCAGATCTTACAGCAGATTTATCAAACTTGGGAGATTTAGGAGCCTTAGGAAACTACCCCGGTTCACCCTTTCTGCCGTCTGATTCTGAAATTTTACTCGATTCTCCAGAGCAAGAGGATATAGTGGAGGAGTTCTTTGTTGATTCTGTACCCGGACCGCCATGCTCTCAGTCAGATGAGGAGAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

366

Amino Acids

39.64

Weight (kDa)

4.71

Isoelectric Point (pI)

65.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_thal_3526	PF09713	58 - 109	7.4e-26	Plant protein 1589 of unknown function (A_thal_3526)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46420 AT2G46420 AT2G46420 AT3G61700 AT3G61700 AT3G61700 AT3G61700
fragaria_vesca	FvH4_7g16290 FvH4_7g16290 FvH4_7g16290 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180
malus_domestica	MD01G1079500.v1.1 MD01G1216500.v1.1 MD07G1148300.v1.1 MD07G1286500.v1.1 MD12G1148300.v1.1
prunus_persica	Prupe.2G186600_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1
pyrus_communis	pycom01g10780 pycom01g22720 pycom07g14730 pycom07g25960
rosa_chinensis	RchiOBHm_Chr1g0359301 RchiOBHm_Chr1g0380221
rosa_laevigata	RLG00000026317 RLG00000027882
rosa_multiflora	Rmu_co8458617.1_g000001 Rmu_sc0001232.1_g000028 Rmu_sc0002689.1_g000001 Rmu_ssc0000135.1_g000052
rosa_roxburghii	Rroxscaffold_4G00279550 Rroxscaffold_4G00297130
rosa_rugosa	Rorug01G0269300 Rorug01G0269400 Rorug01G0419200
rosa_samantha	Rh1AG283300 Rh1AG444000 Rh1BG249500 Rh1BG399100 Rh1CG267400 Rh1CG412500 Rh1DG278400 Rh1DG429600
rosa_wichuraiana	Rw1G025150 Rw1G038560 Rw1G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	509, 592
Acc65I	GGTACC	1 cut(s)	580
AccB1I	GGYRCC	1 cut(s)	580
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	765
AciI	CCGC	2 cut(s)	190, 1064
AclWI	GGATC	3 cut(s)	251, 442, 455
AcsI	RAATTY	3 cut(s)	847, 879, 996
AcuI	CTGAAG	3 cut(s)	437, 479, 726
AdeI	CACNNNGTG	1 cut(s)	65
AfaI	GTAC	2 cut(s)	582, 1056
AfiI	CCNNNNNNNGG	2 cut(s)	518, 836
AflIII	ACRYGT	1 cut(s)	768
AgsI	TTSAA	4 cut(s)	117, 167, 343, 364
AjiI	CACGTC	2 cut(s)	771, 799
AjnI	CCWGG	1 cut(s)	259
AjuI	GAANNNNNNNTTGG	4 cut(s)	410, 442, 870, 902
AluBI	AGCT	3 cut(s)	113, 597, 842
AluI	AGCT	3 cut(s)	113, 597, 842
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	3 cut(s)	251, 442, 455
Ama87I	CYCGRG	1 cut(s)	852
AoxI	GGCC	2 cut(s)	318, 429
ApeKI	GCWGC	2 cut(s)	515, 594
ApoI	RAATTY	3 cut(s)	847, 879, 996
Asp718I	GGTACC	1 cut(s)	580
AspS9I	GGNCC	4 cut(s)	318, 430, 874, 1061
AsuC2I	CCSGG	2 cut(s)	966, 1059
AsuHPI	GGTGA	2 cut(s)	77, 963
AvaI	CYCGRG	1 cut(s)	852
AvaII	GGWCC	2 cut(s)	874, 1061
AxyI	CCTNAGG	1 cut(s)	952
BamHI	GGATCC	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	527, 606
BccI	CCATC	3 cut(s)	459, 537, 623
BceAI	ACGGC	1 cut(s)	967
BciT130I	CCWGG	1 cut(s)	261
BciVI	GTATCC	1 cut(s)	476
BcnI	CCSGG	2 cut(s)	966, 1059
BfaI	CTAG	2 cut(s)	591, 1096
BfuAI	ACCTGC	2 cut(s)	509, 592
BfuI	GTATCC	1 cut(s)	476
BglII	AGATCT	1 cut(s)	910
BisI	GCNGC	2 cut(s)	516, 595
BlsI	GCNGC	2 cut(s)	517, 596
Bme1390I	CCNGG	3 cut(s)	261, 966, 1059
Bme18I	GGWCC	2 cut(s)	874, 1061
BmeT110I	CYCGRG	1 cut(s)	852
BmgBI	CACGTC	2 cut(s)	771, 799
BmgT120I	GGNCC	4 cut(s)	318, 430, 874, 1061
BmiI	GGNNCC	6 cut(s)	423, 432, 449, 582, 645, 949
BmrFI	CCNGG	3 cut(s)	261, 966, 1059
BmsI	GCATC	3 cut(s)	498, 678, 722
BpmI	CTGGAG	1 cut(s)	996
BpuEI	CTTGAG	1 cut(s)	27
BpuMI	CCSGG	2 cut(s)	966, 1059
BsaJI	CCNNGG	3 cut(s)	540, 890, 964
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 836
Bse1I	ACTGG	1 cut(s)	876
Bse21I	CCTNAGG	1 cut(s)	952
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	3 cut(s)	540, 890, 964
BseGI	GGATG	4 cut(s)	451, 551, 601, 674
BseLI	CCNNNNNNNGG	2 cut(s)	518, 836
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	3 cut(s)	877, 913, 1088
BseNI	ACTGG	1 cut(s)	876
BseRI	GAGGAG	1 cut(s)	1049
BseXI	GCAGC	2 cut(s)	527, 606
BsgI	GTGCAG	1 cut(s)	570
BshFI	GGCC	2 cut(s)	320, 431
BshNI	GGYRCC	1 cut(s)	580
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	852
BsiSI	CCGG	2 cut(s)	966, 1059
BslI	CCNNNNNNNGG	2 cut(s)	518, 836
BsnI	GGCC	2 cut(s)	320, 431
BsoBI	CYCGRG	1 cut(s)	852
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	4 cut(s)	256, 447, 866, 910
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	2 cut(s)	190, 1064
BspANI	GGCC	2 cut(s)	320, 431
BspCNI	CTCAG	3 cut(s)	876, 912, 1087
BspLI	GGNNCC	6 cut(s)	423, 432, 449, 582, 645, 949
BspMI	ACCTGC	2 cut(s)	509, 592
BspPI	GGATC	3 cut(s)	251, 442, 455
BspT107I	GGYRCC	1 cut(s)	580
BsrBI	CCGCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	876
BssECI	CCNNGG	3 cut(s)	540, 890, 964
BssMI	GATC	4 cut(s)	256, 447, 866, 910
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	563, 665
BstC8I	GCNNGC	2 cut(s)	20, 513
BstDEI	CTNAG	4 cut(s)	863, 899, 952, 1074
BstDSI	CCRYGG	2 cut(s)	540, 890
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	4 cut(s)	451, 551, 601, 674
BstKTI	GATC	4 cut(s)	259, 450, 869, 913
BstMBI	GATC	4 cut(s)	256, 447, 866, 910
BstNI	CCWGG	1 cut(s)	261
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	3 cut(s)	259, 964, 1057
BstV1I	GCAGC	2 cut(s)	527, 606
BstX2I	RGATCY	3 cut(s)	256, 447, 910
BstXI	CCANNNNNNTGG	1 cut(s)	891
BstYI	RGATCY	3 cut(s)	256, 447, 910
Bsu36I	CCTNAGG	1 cut(s)	952
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	2 cut(s)	320, 431
BtgI	CCRYGG	2 cut(s)	540, 890
BtrI	CACGTC	2 cut(s)	771, 799
BtsCI	GGATG	4 cut(s)	451, 551, 601, 674
BtsIMutI	CAGTG	2 cut(s)	670, 869
BveI	ACCTGC	2 cut(s)	509, 592
Cac8I	GCNNGC	2 cut(s)	20, 513
Cfr13I	GGNCC	4 cut(s)	318, 430, 874, 1061
CpoI	CGGWCCG	1 cut(s)	1061
Csp6I	GTAC	2 cut(s)	581, 1055
CspI	CGGWCCG	1 cut(s)	1061
CviJI	RGCY	8 cut(s)	94, 113, 320, 334, 431, 597, 842, 950
CviKI_1	RGCY	8 cut(s)	94, 113, 320, 334, 431, 597, 842, 950
CviQI	GTAC	2 cut(s)	581, 1055
DdeI	CTNAG	4 cut(s)	863, 899, 952, 1074
DpnI	GATC	4 cut(s)	258, 449, 868, 912
DpnII	GATC	4 cut(s)	256, 447, 866, 910
DraIII	CACNNNGTG	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	540
Eco47I	GGWCC	2 cut(s)	874, 1061
Eco57I	CTGAAG	3 cut(s)	437, 479, 726
Eco81I	CCTNAGG	1 cut(s)	952
Eco88I	CYCGRG	1 cut(s)	852
Eco91I	GGTNACC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	318
EcoO65I	GGTNACC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
FblI	GTMKAC	1 cut(s)	765
Fnu4HI	GCNGC	2 cut(s)	516, 595
FokI	GGATG	4 cut(s)	438, 558, 588, 661
Fsp4HI	GCNGC	2 cut(s)	516, 595
FspBI	CTAG	2 cut(s)	591, 1096
GluI	GCNGC	2 cut(s)	516, 595
GsuI	CTGGAG	1 cut(s)	996
HaeIII	GGCC	2 cut(s)	320, 431
HapII	CCGG	2 cut(s)	966, 1059
HincII	GTYRAC	2 cut(s)	466, 524
HindII	GTYRAC	2 cut(s)	466, 524
HpaI	GTTAAC	1 cut(s)	466
HpaII	CCGG	2 cut(s)	966, 1059
HphI	GGTGA	2 cut(s)	77, 963
Hpy166II	GTNNAC	5 cut(s)	197, 466, 524, 766, 971
Hpy188III	TCNNGA	7 cut(s)	175, 238, 394, 533, 753, 854, 1013
Hpy8I	GTNNAC	5 cut(s)	197, 466, 524, 766, 971
HpyAV	CCTTC	2 cut(s)	412, 503
HpyCH4III	ACNGT	2 cut(s)	563, 665
HpyCH4IV	ACGT	2 cut(s)	770, 798
HpyCH4V	TGCA	8 cut(s)	101, 248, 551, 587, 610, 713, 820, 827
HpyF3I	CTNAG	4 cut(s)	863, 899, 952, 1074
HpySE526I	ACGT	2 cut(s)	770, 798
KpnI	GGTACC	1 cut(s)	584
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	4 cut(s)	256, 447, 866, 910
LmnI	GCTCC	2 cut(s)	839, 947
Lsp1109I	GCAGC	2 cut(s)	527, 606
LweI	GCATC	3 cut(s)	498, 678, 722
MaeI	CTAG	2 cut(s)	591, 1096
MaeII	ACGT	2 cut(s)	770, 798
MaeIII	GTNAC	3 cut(s)	65, 722, 771
MalI	GATC	4 cut(s)	258, 449, 868, 912
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	4 cut(s)	256, 447, 866, 910
MboII	GAAGA	3 cut(s)	16, 305, 308
MflI	RGATCY	3 cut(s)	256, 447, 910
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	7 cut(s)	124, 200, 338, 847, 879, 885, 996
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	4 cut(s)	270, 582, 663, 793
MnlI	CCTC	9 cut(s)	105, 214, 245, 365, 423, 513, 1015, 1027, 1078
MseI	TTAA	3 cut(s)	228, 465, 573
MslI	CAYNNNNRTG	1 cut(s)	611
MspI	CCGG	2 cut(s)	966, 1059
MspR9I	CCNGG	3 cut(s)	261, 966, 1059
MvaI	CCWGG	1 cut(s)	261
NciI	CCSGG	2 cut(s)	966, 1059
NcoI	CCATGG	1 cut(s)	540
NdeII	GATC	4 cut(s)	256, 447, 866, 910
NlaIV	GGNNCC	6 cut(s)	423, 432, 449, 582, 645, 949
NmuCI	GTSAC	3 cut(s)	65, 722, 771
PfeI	GAWTC	9 cut(s)	56, 107, 178, 536, 857, 895, 989, 1007, 1049
PfoI	TCCNGGA	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	517, 596
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	259
PspEI	GGTNACC	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	6 cut(s)	423, 432, 449, 582, 645, 949
PspPI	GGNCC	4 cut(s)	318, 430, 874, 1061
PsuI	RGATCY	3 cut(s)	256, 447, 910
RsaI	GTAC	2 cut(s)	582, 1056
RsaNI	GTAC	2 cut(s)	581, 1055
RseI	CAYNNNNRTG	1 cut(s)	611
Rsr2I	CGGWCCG	1 cut(s)	1061
RsrII	CGGWCCG	1 cut(s)	1061
SaqAI	TTAA	3 cut(s)	228, 465, 573
SatI	GCNGC	2 cut(s)	516, 595
Sau3AI	GATC	4 cut(s)	256, 447, 866, 910
Sau96I	GGNCC	4 cut(s)	318, 430, 874, 1061
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	3 cut(s)	261, 966, 1059
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	3 cut(s)	498, 678, 722
SinI	GGWCC	2 cut(s)	874, 1061
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	7 cut(s)	124, 200, 338, 847, 879, 885, 996
SsiI	CCGC	2 cut(s)	190, 1064
SspMI	CTAG	2 cut(s)	591, 1096
StyD4I	CCNGG	3 cut(s)	259, 964, 1057
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	2 cut(s)	563, 665
TaiI	ACGT	2 cut(s)	773, 801
TaqI	TCGA	4 cut(s)	395, 534, 716, 1005
TasI	AATT	7 cut(s)	124, 200, 338, 847, 879, 885, 996
TfiI	GAWTC	9 cut(s)	56, 107, 178, 536, 857, 895, 989, 1007, 1049
Tru1I	TTAA	3 cut(s)	228, 465, 573
Tru9I	TTAA	3 cut(s)	228, 465, 573
TscAI	CASTG	2 cut(s)	670, 876
TseFI	GTSAC	3 cut(s)	65, 722, 771
TseI	GCWGC	2 cut(s)	515, 594
Tsp45I	GTSAC	3 cut(s)	65, 722, 771
TspDTI	ATGAA	3 cut(s)	17, 224, 590
TspGWI	ACGGA	1 cut(s)	879
TspRI	CASTG	2 cut(s)	670, 876
VpaK11BI	GGWCC	2 cut(s)	874, 1061
XapI	RAATTY	3 cut(s)	847, 879, 996
XmiI	GTMKAC	1 cut(s)	765
XspI	CTAG	2 cut(s)	591, 1096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.